Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009984

Physical Location & Seq

Genomic Coordinates Reverse (-)

607659 .. 608802

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGGTTGCGTCCATGAGTTTCAACATAGTCGGAGCTTTCAGAGGGCTGTCTCTCCGCCCAACATCCACCTCCAGCTCGTCGTCCTCCTCCTTCTTCAGAGGCGATTTGGGTTCTCTGCAACTGGGTCCCAAGCTGTCGTTAGTGTTGTCGGGCCCACAGAGACTTCCATTGACGATTCAAAACGCGCACAAGAAAGGAGCTGGGAGTACCAAGAACGGACGTGATTCCAAAGGCCAGAGGCTCGGCGTCAAGATTTACGGCGACCAGGTCGCCAAGGCTGGCTCCATCATTGTCCGCCAGCGTGGCACCAAATTCCATGCGGGGAAGAATGTGGGGCTCGGCAAGGACCACACCATATTCTCTTTGATTGATGGCATGGTTAAATTTGAGAAGTTTGGACCCGACAAGAAGAAGATTAGTGTTTACCCTCGAGAAGTCCAGCCGGAGAACCCCAACAGCTACCGGGTTAAAAAGAGGGAGAACTTCAGGCTACAGCGTGAACGTAAGAAAGCGAGAAAGGAAGGCTACATCCTTCAAAACAAACCCGAGCTACTACTTGCTTCTGCTGATGCTGCAGATGCCAATCCGGTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0010033 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L27

Protein Analysis

200

Amino Acids

21.73

Weight (kDa)

10.46

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L27	PF01016	63 - 142	1.7e-35	Ribosomal L27 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40950
fragaria_vesca	FvH4_6g53590 FvH4_6g53590
malus_domestica	MD00G1153700.v1.1 MD09G1010200.v1.1 MD17G1000400.v1.1
prunus_persica	Prupe.3G306900_v2.0.a1 Prupe.3G306900_v2.0.a1
pyrus_communis	pycom17g00840
rosa_chinensis	RchiOBHm_Chr2g0175661
rosa_laevigata	RLG00000022346 RLG00000022352
rosa_multiflora	Rmu_sc0000998.1_g000018
rosa_roxburghii	Rroxscaffold_2G00077170
rosa_rugosa	Rorug02G0586900 Rorug02G0587100
rosa_samantha	Rh2AG665800 Rh2BG676900 Rh2CG640200 Rh2DG690800
rosa_wichuraiana	Rw2G054600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	1 cut(s)	188
AciI	CCGC	4 cut(s)	5, 58, 298, 323
AcsI	RAATTY	2 cut(s)	314, 386
AcuI	CTGAAG	2 cut(s)	82, 472
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	25, 182, 539
AjiI	CACGTC	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	6 cut(s)	38, 78, 136, 203, 462, 553
AluI	AGCT	6 cut(s)	38, 78, 136, 203, 462, 553
Alw26I	GTCTC	2 cut(s)	57, 157
Ama87I	CYCGRG	2 cut(s)	432, 548
AoxI	GGCC	2 cut(s)	154, 235
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	2 cut(s)	314, 386
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	5 cut(s)	128, 154, 155, 349, 401
AsuC2I	CCSGG	1 cut(s)	467
AvaI	CYCGRG	2 cut(s)	432, 548
AvaII	GGWCC	3 cut(s)	128, 349, 401
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	2 cut(s)	158, 342
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	2 cut(s)	296, 368
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	57, 157
BfmI	CTRYAG	2 cut(s)	494, 576
BglI	GCCNNNNNGGC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
Bme1390I	CCNGG	2 cut(s)	269, 467
Bme18I	GGWCC	3 cut(s)	128, 349, 401
BmeT110I	CYCGRG	2 cut(s)	432, 548
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	5 cut(s)	128, 154, 155, 349, 401
BmiI	GGNNCC	6 cut(s)	129, 130, 156, 286, 310, 403
BmrFI	CCNGG	2 cut(s)	269, 467
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	562, 571
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	65, 531
BseJI	GATNNNNATC	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	562
BseYI	CCCAGC	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	156, 237
BshNI	GGYRCC	1 cut(s)	308
BsiHKCI	CYCGRG	2 cut(s)	432, 548
BsiSI	CCGG	3 cut(s)	446, 466, 590
BslFI	GGGAC	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	57, 157
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	156, 237
BsoBI	CYCGRG	2 cut(s)	432, 548
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	158, 342
BspACI	CCGC	4 cut(s)	5, 58, 298, 323
BspANI	GGCC	2 cut(s)	156, 237
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	6 cut(s)	129, 130, 156, 286, 310, 403
BspMAI	CTGCAG	1 cut(s)	580
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	276
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	283, 302
BstF5I	GGATG	2 cut(s)	65, 531
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	57, 157
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 575, 581
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	267, 465
BstSFI	CTRYAG	2 cut(s)	494, 576
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	156, 237
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	65, 531
Cac8I	GCNNGC	2 cut(s)	283, 302
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	5 cut(s)	128, 154, 155, 349, 401
CseI	GACGC	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	16, 320, 379
CviQI	GTAC	1 cut(s)	210
EciI	GGCGGA	2 cut(s)	47, 287
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	158, 342
Eco47I	GGWCC	3 cut(s)	128, 349, 401
Eco57I	CTGAAG	2 cut(s)	82, 472
Eco88I	CYCGRG	2 cut(s)	432, 548
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	158, 342
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	19, 323, 382
FaiI	YATR	5 cut(s)	17, 29, 321, 359, 380
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	3 cut(s)	15, 319, 378
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	2 cut(s)	52, 518
FriOI	GRGCYC	2 cut(s)	158, 342
Fsp4HI	GCNGC	1 cut(s)	576
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	576
GsaI	CCCAGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	156, 237
HapII	CCGG	3 cut(s)	446, 466, 590
HgaI	GACGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	19, 323, 382
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	178, 227
HpaII	CCGG	3 cut(s)	446, 466, 590
Hpy166II	GTNNAC	2 cut(s)	427, 503
Hpy188I	TCNGA	3 cut(s)	35, 44, 101
Hpy188III	TCNNGA	2 cut(s)	253, 434
Hpy8I	GTNNAC	2 cut(s)	427, 503
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	103, 518, 545
HpyCH4IV	ACGT	2 cut(s)	223, 505
HpyCH4V	TGCA	2 cut(s)	121, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 575, 581
HpySE526I	ACGT	2 cut(s)	223, 505
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	19, 323, 382
HspAI	GCGC	1 cut(s)	188
KflI	GGGWCCC	1 cut(s)	128
LmnI	GCTCC	3 cut(s)	35, 200, 290
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	2 cut(s)	562, 571
MabI	ACCWGGT	1 cut(s)	267
MaeII	ACGT	2 cut(s)	223, 505
MboII	GAAGA	4 cut(s)	88, 340, 424, 427
MhlI	GDGCHC	2 cut(s)	158, 342
MluCI	AATT	2 cut(s)	314, 386
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	38, 82, 95, 97, 100, 234, 441, 471
MseI	TTAA	3 cut(s)	384, 471, 598
MspI	CCGG	3 cut(s)	446, 466, 590
MspR9I	CCNGG	2 cut(s)	269, 467
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	306, 575, 581
NciI	CCSGG	1 cut(s)	467
NlaIII	CATG	3 cut(s)	19, 323, 382
NlaIV	GGNNCC	6 cut(s)	129, 130, 156, 286, 310, 403
NmeAIII	GCCGAG	2 cut(s)	225, 321
PaeR7I	CTCGAG	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	178, 227
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	6 cut(s)	129, 130, 156, 286, 310, 403
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	5 cut(s)	128, 154, 155, 349, 401
PspPPI	RGGWCCY	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	580
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	3 cut(s)	384, 471, 598
SatI	GCNGC	1 cut(s)	576
Sau96I	GGNCC	5 cut(s)	128, 154, 155, 349, 401
ScrFI	CCNGG	2 cut(s)	269, 467
SduI	GDGCHC	2 cut(s)	158, 342
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	2 cut(s)	562, 571
SfcI	CTRYAG	2 cut(s)	494, 576
Sfr274I	CTCGAG	1 cut(s)	432
SinI	GGWCC	3 cut(s)	128, 349, 401
SlaI	CTCGAG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	2 cut(s)	314, 386
SsiI	CCGC	4 cut(s)	5, 58, 298, 323
StyD4I	CCNGG	2 cut(s)	267, 465
StyI	CCWWGG	1 cut(s)	276
TaiI	ACGT	2 cut(s)	226, 508
TaqI	TCGA	1 cut(s)	433
TasI	AATT	2 cut(s)	314, 386
TfiI	GAWTC	2 cut(s)	178, 227
Tru1I	TTAA	3 cut(s)	384, 471, 598
Tru9I	TTAA	3 cut(s)	384, 471, 598
TseI	GCWGC	1 cut(s)	575
TspGWI	ACGGA	1 cut(s)	234
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	3 cut(s)	128, 349, 401
XapI	RAATTY	2 cut(s)	314, 386
XhoI	CTCGAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.