Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007264

Physical Location & Seq

Genomic Coordinates Reverse (-)

707551 .. 708724

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTCCAGAAATCAAATCCCTTTTATCCAAAGTTCTCATCTTTCTTCAAGAGAGTAACAATTTCTTTGGATCAGAGACTATATCCTGAGAATCATATCATTTTGTGGGAAAATGCTAGATCGCCTGCAATTCATGAGGGCTTCGAGGTGAAGAGAAAAGGTGACAAAGAATTTACTGTGAACATACGGTTGGAAATGAATTATGCGCCTGAGAAGTTTAAGCTTTCTCAACCGTTGATGGAAGTTCTTGGTATTGAGGTTGAAACCCGACCTAGGATTATAGCTTCAATCTGGCACTATGTGAAGGCTAGGAAATTGCAGAACCAGCATGACCCTTCTTTCTTTAACTGTGATCCACCACTTCATAAAGTATTTGGGGAAGAAAGGATGAAATTCACCATGGTATCGCAGAAGATATCTCAGCATTTGTTCCCCCCACAACCTATACATTTGGAGCATAAGATAAAGCTTTCAGGAAATAGTCCAGCTGGAACTGCATGTTATGATGTGTTGGTTGACGTACCTTTTCCAATTCAAAGGGAACTGTCTGCTCTTTTGGCCAACTCCGAGAAGAACAAAGAGATTGATACCTGTGATGAAGCAATATGTGCAGCTATAAGAAAAATCCATGAGCATCGTCGCAGGCGAGCTTTTTTCCTTGGGTTTAGTCAATCTCCTGTAGAATTTATCAATGCACTGATTGAATCTCAAAACAAAGATTTAAAGCTTGTAGCTGGAGTAGCAAGCCGTAGTGCTGAAAAAGAGAGGCGATCAGATTTCTTCCACCAACCATGGGTCGAAGATGCTGTTATCCGGTATCTGAATCGTAAGCCAGGTGCAGGAGGTGATGCTGCTCCTGGAGGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009909 GO:0009987 GO:0010224 GO:0010468 GO:0019222 GO:0022622 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0048364 GO:0048580 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0099402 GO:1901360 GO:2000024 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

SWIB

Protein Analysis

290

Amino Acids

33.21

Weight (kDa)

9.17

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIB	PF02201	71 - 143	3.5e-23	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01890 AT5G14170
fragaria_vesca	FvH4_6g53310 FvH4_6g53310 FvH4_6g53310
malus_domestica	MD09G1011600.v1.1 MD17G1012300.v1.1
prunus_persica	Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1 Prupe.3G305400_v2.0.a1
pyrus_communis	pycom111g00990 pycom17g00980
rosa_chinensis	RchiOBHm_Chr2g0175471
rosa_laevigata	RLG00000022330
rosa_multiflora	Rmu_sc0003302.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077300
rosa_rugosa	Rorug02G0584700 Rorug02G0584800 Rorug02G0584900 Rorug02G0585000
rosa_samantha	Rh2AG664500 Rh2BG675200 Rh2CG638400 Rh2DG689200
rosa_wichuraiana	Rw2G054460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	78, 347
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	3 cut(s)	170, 392, 683
AdeI	CACNNNGTG	1 cut(s)	301
AfaI	GTAC	1 cut(s)	522
AfiI	CCNNNNNNNGG	3 cut(s)	273, 793, 839
AgsI	TTSAA	5 cut(s)	49, 263, 288, 536, 704
AjnI	CCWGG	2 cut(s)	832, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	8 cut(s)	223, 284, 469, 488, 614, 650, 727, 734
AluI	AGCT	8 cut(s)	223, 284, 469, 488, 614, 650, 727, 734
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	78, 347
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	2 cut(s)	611, 851
ApoI	RAATTY	3 cut(s)	170, 392, 683
AspA2I	CCTAGG	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	160, 173, 388, 857
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BalI	TGGCCA	1 cut(s)	560
BbvI	GCAGC	2 cut(s)	623, 838
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	2 cut(s)	834, 858
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	3 cut(s)	117, 273, 309
BfmI	CTRYAG	1 cut(s)	678
BisI	GCNGC	2 cut(s)	612, 852
BlnI	CCTAGG	1 cut(s)	272
BlsI	GCNGC	2 cut(s)	613, 853
Bme1390I	CCNGG	2 cut(s)	834, 858
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	834, 858
BmsI	GCATC	3 cut(s)	643, 793, 838
BpmI	CTGGAG	1 cut(s)	756
BsaJI	CCNNGG	4 cut(s)	272, 399, 658, 791
BsaWI	WCCGGW	1 cut(s)	813
Bsc4I	CCNNNNNNNGG	3 cut(s)	273, 793, 839
BseBI	CCWGG	2 cut(s)	834, 858
BseDI	CCNNGG	4 cut(s)	272, 399, 658, 791
BseGI	GGATG	1 cut(s)	393
BseLI	CCNNNNNNNGG	3 cut(s)	273, 793, 839
BseMII	CTCAG	3 cut(s)	78, 201, 434
BseXI	GCAGC	2 cut(s)	623, 838
BsgI	GTGCAG	2 cut(s)	630, 858
BshFI	GGCC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	814
BslI	CCNNNNNNNGG	3 cut(s)	273, 793, 839
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	560
Bsp143I	GATC	4 cut(s)	70, 119, 352, 770
Bsp19I	CCATGG	2 cut(s)	399, 791
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	3 cut(s)	79, 202, 433
BspHI	TCATGA	1 cut(s)	133
BspPI	GGATC	2 cut(s)	78, 347
BssECI	CCNNGG	4 cut(s)	272, 399, 658, 791
BssMI	GATC	4 cut(s)	70, 119, 352, 770
BssT1I	CCWWGG	4 cut(s)	272, 399, 658, 791
Bst2UI	CCWGG	2 cut(s)	834, 858
Bst4CI	ACNGT	5 cut(s)	178, 189, 234, 350, 546
Bst6I	CTCTTC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	126, 644, 648, 745
BstDEI	CTNAG	3 cut(s)	87, 210, 420
BstDSI	CCRYGG	2 cut(s)	399, 791
BstF5I	GGATG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	4 cut(s)	73, 122, 355, 773
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	70, 119, 352, 770
BstMWI	GCNNNNNNNGC	5 cut(s)	325, 494, 557, 608, 740
BstNI	CCWGG	2 cut(s)	834, 858
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	832, 856
BstSFI	CTRYAG	1 cut(s)	678
BstV1I	GCAGC	2 cut(s)	623, 838
BsuRI	GGCC	1 cut(s)	560
BtgI	CCRYGG	2 cut(s)	399, 791
BtsCI	GGATG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	695
Cac8I	GCNNGC	4 cut(s)	126, 644, 648, 745
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	6 cut(s)	134, 329, 400, 498, 629, 792
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	3 cut(s)	87, 210, 420
DpnI	GATC	4 cut(s)	72, 121, 354, 772
DpnII	GATC	4 cut(s)	70, 119, 352, 770
DraI	TTTAAA	1 cut(s)	723
DraIII	CACNNNGTG	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	4 cut(s)	272, 399, 658, 791
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	832, 856
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	4 cut(s)	272, 399, 658, 791
ErhI	CCWWGG	4 cut(s)	272, 399, 658, 791
FaeI	CATG	6 cut(s)	137, 332, 403, 501, 632, 795
FatI	CATG	6 cut(s)	133, 328, 399, 497, 628, 791
FauNDI	CATATG	1 cut(s)	866
Fnu4HI	GCNGC	2 cut(s)	612, 852
FokI	GGATG	1 cut(s)	400
Fsp4HI	GCNGC	2 cut(s)	612, 852
FspBI	CTAG	3 cut(s)	117, 273, 309
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	2 cut(s)	612, 852
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	814
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	6 cut(s)	137, 332, 403, 501, 632, 795
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	3 cut(s)	221, 467, 725
HinfI	GANTC	3 cut(s)	91, 704, 823
HpaII	CCGG	1 cut(s)	814
HphI	GGTGA	4 cut(s)	160, 173, 388, 857
Hpy166II	GTNNAC	2 cut(s)	181, 517
Hpy188I	TCNGA	4 cut(s)	75, 568, 775, 822
Hpy188III	TCNNGA	5 cut(s)	7, 49, 86, 134, 474
Hpy8I	GTNNAC	2 cut(s)	181, 517
Hpy99I	CGWCG	1 cut(s)	642
HpyAV	CCTTC	2 cut(s)	298, 345
HpyCH4III	ACNGT	5 cut(s)	178, 189, 234, 350, 546
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	6 cut(s)	128, 319, 497, 611, 695, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	325, 494, 557, 608, 740
HpyF3I	CTNAG	3 cut(s)	87, 210, 420
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	6 cut(s)	137, 332, 403, 501, 632, 795
HspAI	GCGC	1 cut(s)	206
Kzo9I	GATC	4 cut(s)	70, 119, 352, 770
LmnI	GCTCC	2 cut(s)	454, 859
Lsp1109I	GCAGC	2 cut(s)	623, 838
LweI	GCATC	3 cut(s)	643, 793, 838
MaeI	CTAG	3 cut(s)	117, 273, 309
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	2 cut(s)	55, 161
MalI	GATC	4 cut(s)	72, 121, 354, 772
MboI	GATC	4 cut(s)	70, 119, 352, 770
MboII	GAAGA	7 cut(s)	37, 163, 392, 424, 583, 772, 812
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	8 cut(s)	60, 129, 170, 199, 314, 392, 531, 683
MluNI	TGGCCA	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	130, 139, 250, 759, 836, 854
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	3 cut(s)	219, 345, 722
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	814
MspR9I	CCNGG	2 cut(s)	834, 858
MvaI	CCWGG	2 cut(s)	834, 858
MwoI	GCNNNNNNNGC	5 cut(s)	325, 494, 557, 608, 740
NcoI	CCATGG	2 cut(s)	399, 791
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	4 cut(s)	70, 119, 352, 770
NlaIII	CATG	6 cut(s)	137, 332, 403, 501, 632, 795
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	501
PagI	TCATGA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	643
PfeI	GAWTC	3 cut(s)	91, 704, 823
PfoI	TCCNGGA	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	613, 853
Psp6I	CCWGG	2 cut(s)	832, 856
PspGI	CCWGG	2 cut(s)	832, 856
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	219, 345, 722
SatI	GCNGC	2 cut(s)	612, 852
Sau3AI	GATC	4 cut(s)	70, 119, 352, 770
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	834, 858
SfaNI	GCATC	3 cut(s)	643, 793, 838
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	8 cut(s)	60, 129, 170, 199, 314, 392, 531, 683
SspMI	CTAG	3 cut(s)	117, 273, 309
StyD4I	CCNGG	2 cut(s)	832, 856
StyI	CCWWGG	4 cut(s)	272, 399, 658, 791
TaaI	ACNGT	5 cut(s)	178, 189, 234, 350, 546
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	144, 798
TasI	AATT	8 cut(s)	60, 129, 170, 199, 314, 392, 531, 683
TfiI	GAWTC	3 cut(s)	91, 704, 823
Tru1I	TTAA	3 cut(s)	219, 345, 722
Tru9I	TTAA	3 cut(s)	219, 345, 722
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	611, 851
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	5 cut(s)	122, 212, 353, 404, 612
TspRI	CASTG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	170, 392, 683
XceI	RCATGY	1 cut(s)	501
XmaJI	CCTAGG	1 cut(s)	272
XspI	CTAG	3 cut(s)	117, 273, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.