Bromodomain extra-terminal - transcription regulation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600 |
| fragaria_vesca | FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 |
| malus_domestica | MD09G1020300.v1.1 |
| prunus_persica | Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1 |
| pyrus_communis | pycom111g01700 pycom17g01750 |
| rosa_chinensis | RchiOBHm_Chr2g0173581 |
| rosa_laevigata | RLG00000022204 |
| rosa_multiflora | Rmu_sc0002538.1_g000021 |
| rosa_roxburghii | Rroxscaffold_2G00078760 |
| rosa_rugosa | Rorug02G0571500 Rorug02G0571500 |
| rosa_samantha | Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100 |
| rosa_wichuraiana | Rw2G053380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 140 |
| AfaI | GTAC | 1 cut(s) | 235 |
| AflIII | ACRYGT | 2 cut(s) | 11, 98 |
| AgsI | TTSAA | 2 cut(s) | 277, 364 |
| Alw21I | GWGCWC | 1 cut(s) | 11 |
| Alw44I | GTGCAC | 1 cut(s) | 7 |
| Ama87I | CYCGRG | 1 cut(s) | 160 |
| ApaLI | GTGCAC | 1 cut(s) | 7 |
| ApeKI | GCWGC | 1 cut(s) | 74 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 135 |
| AsuC2I | CCSGG | 1 cut(s) | 262 |
| AvaI | CYCGRG | 1 cut(s) | 160 |
| BaeGI | GKGCMC | 1 cut(s) | 11 |
| Bbv12I | GWGCWC | 1 cut(s) | 11 |
| BbvI | GCAGC | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 262 |
| BfmI | CTRYAG | 1 cut(s) | 75 |
| BisI | GCNGC | 1 cut(s) | 75 |
| BlsI | GCNGC | 1 cut(s) | 76 |
| Bme1390I | CCNGG | 1 cut(s) | 262 |
| BmeT110I | CYCGRG | 1 cut(s) | 160 |
| BmiI | GGNNCC | 1 cut(s) | 259 |
| BmrFI | CCNGG | 1 cut(s) | 262 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| BpuMI | CCSGG | 1 cut(s) | 262 |
| BsaJI | CCNNGG | 1 cut(s) | 159 |
| BseDI | CCNNGG | 1 cut(s) | 159 |
| BseMII | CTCAG | 1 cut(s) | 316 |
| BseSI | GKGCMC | 1 cut(s) | 11 |
| BseXI | GCAGC | 1 cut(s) | 61 |
| Bsh1236I | CGCG | 1 cut(s) | 13 |
| BsiHKAI | GWGCWC | 1 cut(s) | 11 |
| BsiHKCI | CYCGRG | 1 cut(s) | 160 |
| BsiSI | CCGG | 1 cut(s) | 261 |
| BsoBI | CYCGRG | 1 cut(s) | 160 |
| Bsp1286I | GDGCHC | 1 cut(s) | 11 |
| BspACI | CCGC | 1 cut(s) | 140 |
| BspCNI | CTCAG | 1 cut(s) | 315 |
| BspFNI | CGCG | 1 cut(s) | 13 |
| BspLI | GGNNCC | 1 cut(s) | 259 |
| BspMAI | CTGCAG | 1 cut(s) | 79 |
| BssECI | CCNNGG | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 1 cut(s) | 11 |
| BstDEI | CTNAG | 1 cut(s) | 302 |
| BstFNI | CGCG | 1 cut(s) | 13 |
| BstNSI | RCATGY | 1 cut(s) | 330 |
| BstSCI | CCNGG | 1 cut(s) | 260 |
| BstSFI | CTRYAG | 1 cut(s) | 75 |
| BstSLI | GKGCMC | 1 cut(s) | 11 |
| BstUI | CGCG | 1 cut(s) | 13 |
| BstV1I | GCAGC | 1 cut(s) | 61 |
| Cac8I | GCNNGC | 1 cut(s) | 11 |
| Csp6I | GTAC | 1 cut(s) | 234 |
| CviAII | CATG | 1 cut(s) | 327 |
| CviJI | RGCY | 1 cut(s) | 265 |
| CviKI_1 | RGCY | 1 cut(s) | 265 |
| CviQI | GTAC | 1 cut(s) | 234 |
| DdeI | CTNAG | 1 cut(s) | 302 |
| EciI | GGCGGA | 1 cut(s) | 129 |
| Eco88I | CYCGRG | 1 cut(s) | 160 |
| FaeI | CATG | 1 cut(s) | 330 |
| FaiI | YATR | 8 cut(s) | 68, 96, 222, 328, 347, 349, 351, 359 |
| FatI | CATG | 1 cut(s) | 326 |
| Fnu4HI | GCNGC | 1 cut(s) | 75 |
| Fsp4HI | GCNGC | 1 cut(s) | 75 |
| GluI | GCNGC | 1 cut(s) | 75 |
| HapII | CCGG | 1 cut(s) | 261 |
| Hin1II | CATG | 1 cut(s) | 330 |
| HpaII | CCGG | 1 cut(s) | 261 |
| Hpy166II | GTNNAC | 3 cut(s) | 9, 82, 332 |
| Hpy188I | TCNGA | 1 cut(s) | 271 |
| Hpy188III | TCNNGA | 1 cut(s) | 46 |
| Hpy8I | GTNNAC | 3 cut(s) | 9, 82, 332 |
| HpyAV | CCTTC | 1 cut(s) | 118 |
| HpyCH4IV | ACGT | 1 cut(s) | 100 |
| HpyCH4V | TGCA | 3 cut(s) | 9, 77, 326 |
| HpyF3I | CTNAG | 1 cut(s) | 302 |
| HpySE526I | ACGT | 1 cut(s) | 100 |
| Hsp92II | CATG | 1 cut(s) | 330 |
| LpnPI | CCDG | 4 cut(s) | 128, 274, 289, 293 |
| Lsp1109I | GCAGC | 1 cut(s) | 61 |
| MaeII | ACGT | 1 cut(s) | 100 |
| MaeIII | GTNAC | 5 cut(s) | 18, 89, 106, 245, 297 |
| MboII | GAAGA | 3 cut(s) | 41, 140, 143 |
| MhlI | GDGCHC | 1 cut(s) | 11 |
| MluI | ACGCGT | 1 cut(s) | 11 |
| MnlI | CCTC | 3 cut(s) | 169, 181, 188 |
| MroXI | GAANNNNTTC | 1 cut(s) | 135 |
| MspI | CCGG | 1 cut(s) | 261 |
| MspR9I | CCNGG | 1 cut(s) | 262 |
| MvnI | CGCG | 1 cut(s) | 13 |
| NciI | CCSGG | 1 cut(s) | 262 |
| NlaIII | CATG | 1 cut(s) | 330 |
| NlaIV | GGNNCC | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| NspI | RCATGY | 1 cut(s) | 330 |
| PdmI | GAANNNNTTC | 1 cut(s) | 135 |
| PkrI | GCNGC | 1 cut(s) | 76 |
| PspN4I | GGNNCC | 1 cut(s) | 259 |
| PstI | CTGCAG | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 235 |
| RsaNI | GTAC | 1 cut(s) | 234 |
| SatI | GCNGC | 1 cut(s) | 75 |
| ScrFI | CCNGG | 1 cut(s) | 262 |
| SduI | GDGCHC | 1 cut(s) | 11 |
| SetI | ASST | 5 cut(s) | 103, 117, 192, 321, 346 |
| SfcI | CTRYAG | 1 cut(s) | 75 |
| SmlI | CTYRAG | 1 cut(s) | 44 |
| SmoI | CTYRAG | 1 cut(s) | 44 |
| SsiI | CCGC | 1 cut(s) | 140 |
| StyD4I | CCNGG | 1 cut(s) | 260 |
| TaiI | ACGT | 1 cut(s) | 103 |
| TaqI | TCGA | 3 cut(s) | 27, 122, 290 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| TseI | GCWGC | 1 cut(s) | 74 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| VneI | GTGCAC | 1 cut(s) | 7 |
| XceI | RCATGY | 1 cut(s) | 330 |
| XmnI | GAANNNNTTC | 1 cut(s) | 135 |