Alpha-amylase C-terminal beta-sheet domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15550 AT5G15550 AT5G15550 |
| fragaria_vesca | FvH4_6g46921 FvH4_6g46921 FvH4_6g46921 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 FvH4_6g46930 |
| malus_domestica | MD09G1066000.v1.1 MD09G1066100.v1.1 MD17G1058700.v1.1 MD17G1058800.v1.1 |
| prunus_persica | Prupe.3G255400_v2.0.a1 Prupe.3G255500_v2.0.a1 |
| pyrus_communis | pycom111g05550 pycom17g05870 |
| rosa_chinensis | RchiOBHm_Chr2g0165901 RchiOBHm_Chr2g0165911 |
| rosa_laevigata | RLG00000021569 |
| rosa_multiflora | Rmu_co8422767.1_g000001 Rmu_sc0006218.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00085310 Rroxscaffold_2G00085320 |
| rosa_rugosa | Rorug02G0519200 Rorug02G0519300 |
| rosa_samantha | Rh2AG584700 Rh2AG584800 Rh2BG596600 Rh2CG567400 Rh2DG606700 Rh2DG606800 |
| rosa_wichuraiana | Rw2G048750 Rw2G048760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2898 |
| Acc65I | GGTACC | 3 cut(s) | 1779, 1916, 2261 |
| AccB1I | GGYRCC | 5 cut(s) | 875, 1779, 1916, 2232, 2261 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1677, 1718 |
| AccBSI | CCGCTC | 1 cut(s) | 2459 |
| AccI | GTMKAC | 1 cut(s) | 70 |
| AccII | CGCG | 2 cut(s) | 466, 2765 |
| AclWI | GGATC | 7 cut(s) | 1496, 2081, 2402, 2483, 2575, 2725, 2738 |
| AcoI | YGGCCR | 1 cut(s) | 2585 |
| AcsI | RAATTY | 5 cut(s) | 1013, 1452, 2028, 2092, 2347 |
| AcuI | CTGAAG | 9 cut(s) | 48, 109, 234, 681, 834, 1266, 1521, 1643, 2088 |
| AcyI | GRCGYC | 1 cut(s) | 2233 |
| AfaI | GTAC | 8 cut(s) | 561, 1459, 1781, 1895, 1918, 2263, 2413, 2910 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 465, 630, 631, 1051, 1583, 1677, 1718, 2120, 2842 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2887 |
| AjiI | CACGTC | 1 cut(s) | 238 |
| AjnI | CCWGG | 6 cut(s) | 102, 1469, 1711, 1782, 1974, 2638 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 15, 47, 452, 484, 926, 958, 2374, 2406 |
| Alw21I | GWGCWC | 4 cut(s) | 981, 1653, 1688, 2008 |
| Alw26I | GTCTC | 2 cut(s) | 1261, 2687 |
| Alw44I | GTGCAC | 1 cut(s) | 2004 |
| AlwI | GGATC | 7 cut(s) | 1496, 2081, 2402, 2483, 2575, 2725, 2738 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 481, 659, 1718, 1859 |
| ApaLI | GTGCAC | 1 cut(s) | 2004 |
| ApeKI | GCWGC | 9 cut(s) | 48, 455, 481, 641, 656, 665, 1166, 1802, 2138 |
| ApoI | RAATTY | 5 cut(s) | 1013, 1452, 2028, 2092, 2347 |
| AseI | ATTAAT | 1 cut(s) | 290 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 133, 155, 2113 |
| Asp718I | GGTACC | 3 cut(s) | 1779, 1916, 2261 |
| AspLEI | GCGC | 1 cut(s) | 2235 |
| AspS9I | GGNCC | 9 cut(s) | 319, 952, 1415, 1972, 2063, 2101, 2526, 2578, 2724 |
| AsuC2I | CCSGG | 1 cut(s) | 2728 |
| AsuHPI | GGTGA | 6 cut(s) | 709, 791, 1331, 1598, 2363, 2807 |
| AsuII | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| AsuNHI | GCTAGC | 1 cut(s) | 410 |
| AvaII | GGWCC | 1 cut(s) | 1415 |
| BaeGI | GKGCMC | 1 cut(s) | 2008 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2253, 2286, 2790, 2823 |
| BamHI | GGATCC | 1 cut(s) | 2730 |
| BanI | GGYRCC | 5 cut(s) | 875, 1779, 1916, 2232, 2261 |
| BanII | GRGCYC | 1 cut(s) | 981 |
| BauI | CACGAG | 2 cut(s) | 2532, 2595 |
| BbsI | GAAGAC | 3 cut(s) | 115, 1104, 1673 |
| Bbv12I | GWGCWC | 4 cut(s) | 981, 1653, 1688, 2008 |
| BbvI | GCAGC | 9 cut(s) | 35, 467, 468, 643, 653, 677, 1153, 1789, 2150 |
| BccI | CCATC | 7 cut(s) | 480, 1316, 1406, 1435, 2219, 2223, 2514 |
| BceAI | ACGGC | 3 cut(s) | 863, 1845, 2572 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 444, 478 |
| BciT130I | CCWGG | 6 cut(s) | 104, 1471, 1713, 1784, 1976, 2640 |
| BciVI | GTATCC | 1 cut(s) | 2609 |
| BclI | TGATCA | 1 cut(s) | 2152 |
| BcnI | CCSGG | 1 cut(s) | 2728 |
| BcoDI | GTCTC | 2 cut(s) | 1261, 2687 |
| BfaI | CTAG | 4 cut(s) | 300, 411, 614, 1446 |
| BfmI | CTRYAG | 2 cut(s) | 651, 1560 |
| BfoI | RGCGCY | 1 cut(s) | 2236 |
| BfuI | GTATCC | 1 cut(s) | 2609 |
| BglII | AGATCT | 2 cut(s) | 1366, 1523 |
| Bme1390I | CCNGG | 7 cut(s) | 104, 1471, 1713, 1784, 1976, 2640, 2728 |
| Bme18I | GGWCC | 1 cut(s) | 1415 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2887 |
| BmgBI | CACGTC | 1 cut(s) | 238 |
| BmgT120I | GGNCC | 9 cut(s) | 319, 952, 1415, 1972, 2063, 2101, 2526, 2578, 2724 |
| BmrFI | CCNGG | 7 cut(s) | 104, 1471, 1713, 1784, 1976, 2640, 2728 |
| BmtI | GCTAGC | 1 cut(s) | 414 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2679 |
| BpiI | GAAGAC | 3 cut(s) | 115, 1104, 1673 |
| BpmI | CTGGAG | 6 cut(s) | 833, 1028, 1492, 1667, 1786, 2497 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1566 |
| Bpu14I | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| BpuEI | CTTGAG | 4 cut(s) | 470, 1225, 1854, 2478 |
| BpuMI | CCSGG | 1 cut(s) | 2728 |
| Bsa29I | ATCGAT | 1 cut(s) | 1491 |
| BsaHI | GRCGYC | 1 cut(s) | 2233 |
| BsaI | GGTCTC | 1 cut(s) | 2687 |
| BsaJI | CCNNGG | 9 cut(s) | 103, 384, 1119, 1469, 1689, 1920, 1974, 1975, 2104 |
| BsaWI | WCCGGW | 1 cut(s) | 1724 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1971, 2001 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 465, 630, 631, 1051, 1583, 1677, 1718, 2120, 2842 |
| Bse118I | RCCGGY | 1 cut(s) | 2373 |
| Bse1I | ACTGG | 8 cut(s) | 762, 834, 850, 1509, 1723, 2480, 2512, 2808 |
| Bse3DI | GCAATG | 5 cut(s) | 14, 54, 73, 1004, 2734 |
| BseBI | CCWGG | 6 cut(s) | 104, 1471, 1713, 1784, 1976, 2640 |
| BseCI | ATCGAT | 1 cut(s) | 1491 |
| BseDI | CCNNGG | 9 cut(s) | 103, 384, 1119, 1469, 1689, 1920, 1974, 1975, 2104 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 465, 630, 631, 1051, 1583, 1677, 1718, 2120, 2842 |
| BseMI | GCAATG | 5 cut(s) | 14, 54, 73, 1004, 2734 |
| BseMII | CTCAG | 5 cut(s) | 333, 911, 987, 1125, 1580 |
| BseNI | ACTGG | 8 cut(s) | 762, 834, 850, 1509, 1723, 2480, 2512, 2808 |
| BseRI | GAGGAG | 3 cut(s) | 1067, 1290, 1857 |
| BseSI | GKGCMC | 1 cut(s) | 2008 |
| BseXI | GCAGC | 9 cut(s) | 35, 467, 468, 643, 653, 677, 1153, 1789, 2150 |
| BseYI | CCCAGC | 1 cut(s) | 1315 |
| BsgI | GTGCAG | 1 cut(s) | 145 |
| Bsh1236I | CGCG | 2 cut(s) | 466, 2765 |
| BshNI | GGYRCC | 5 cut(s) | 875, 1779, 1916, 2232, 2261 |
| BshVI | ATCGAT | 1 cut(s) | 1491 |
| BsiHKAI | GWGCWC | 4 cut(s) | 981, 1653, 1688, 2008 |
| BsiSI | CCGG | 5 cut(s) | 1725, 2297, 2374, 2727, 2740 |
| BslFI | GGGAC | 2 cut(s) | 1452, 2336 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 465, 630, 631, 1051, 1583, 1677, 1718, 2120, 2842 |
| BsmAI | GTCTC | 2 cut(s) | 1261, 2687 |
| BsmFI | GGGAC | 2 cut(s) | 1452, 2336 |
| BsmI | GAATGC | 2 cut(s) | 1941, 1954 |
| Bso31I | GGTCTC | 1 cut(s) | 2687 |
| Bsp119I | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| Bsp1286I | GDGCHC | 4 cut(s) | 981, 1653, 1688, 2008 |
| Bsp1407I | TGTACA | 1 cut(s) | 1893 |
| BspCNI | CTCAG | 5 cut(s) | 334, 910, 988, 1126, 1579 |
| BspDI | ATCGAT | 1 cut(s) | 1491 |
| BspFNI | CGCG | 2 cut(s) | 466, 2765 |
| BspOI | GCTAGC | 1 cut(s) | 414 |
| BspPI | GGATC | 7 cut(s) | 1496, 2081, 2402, 2483, 2575, 2725, 2738 |
| BspQI | GCTCTTC | 1 cut(s) | 2466 |
| BspT104I | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| BspT107I | GGYRCC | 5 cut(s) | 875, 1779, 1916, 2232, 2261 |
| BspTNI | GGTCTC | 1 cut(s) | 2687 |
| BsrBI | CCGCTC | 1 cut(s) | 2459 |
| BsrDI | GCAATG | 5 cut(s) | 14, 54, 73, 1004, 2734 |
| BsrFI | RCCGGY | 1 cut(s) | 2373 |
| BsrGI | TGTACA | 1 cut(s) | 1893 |
| BsrI | ACTGG | 8 cut(s) | 762, 834, 850, 1509, 1723, 2480, 2512, 2808 |
| BssAI | RCCGGY | 1 cut(s) | 2373 |
| BssECI | CCNNGG | 9 cut(s) | 103, 384, 1119, 1469, 1689, 1920, 1974, 1975, 2104 |
| BssNI | GRCGYC | 1 cut(s) | 2233 |
| BssSI | CACGAG | 2 cut(s) | 2532, 2595 |
| BssT1I | CCWWGG | 2 cut(s) | 1119, 2104 |
| Bst2BI | CACGAG | 2 cut(s) | 2532, 2595 |
| Bst2UI | CCWGG | 6 cut(s) | 104, 1471, 1713, 1784, 1976, 2640 |
| Bst4CI | ACNGT | 2 cut(s) | 732, 1921 |
| Bst6I | CTCTTC | 3 cut(s) | 363, 492, 2466 |
| BstACI | GRCGYC | 1 cut(s) | 2233 |
| BstAUI | TGTACA | 1 cut(s) | 1893 |
| BstBI | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| BstC8I | GCNNGC | 7 cut(s) | 164, 412, 597, 786, 840, 2055, 2867 |
| BstDEI | CTNAG | 9 cut(s) | 342, 511, 519, 897, 996, 1134, 1566, 1789, 2329 |
| BstDSI | CCRYGG | 1 cut(s) | 1920 |
| BstFNI | CGCG | 2 cut(s) | 466, 2765 |
| BstH2I | RGCGCY | 1 cut(s) | 2236 |
| BstHHI | GCGC | 1 cut(s) | 2235 |
| BstMAI | GTCTC | 2 cut(s) | 1261, 2687 |
| BstNI | CCWGG | 6 cut(s) | 104, 1471, 1713, 1784, 1976, 2640 |
| BstNSI | RCATGY | 3 cut(s) | 788, 965, 1607 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2679 |
| BstSCI | CCNGG | 7 cut(s) | 102, 1469, 1711, 1782, 1974, 2638, 2726 |
| BstSFI | CTRYAG | 2 cut(s) | 651, 1560 |
| BstSLI | GKGCMC | 1 cut(s) | 2008 |
| BstUI | CGCG | 2 cut(s) | 466, 2765 |
| BstV1I | GCAGC | 9 cut(s) | 35, 467, 468, 643, 653, 677, 1153, 1789, 2150 |
| BstV2I | GAAGAC | 3 cut(s) | 115, 1104, 1673 |
| BstX2I | RGATCY | 4 cut(s) | 1366, 1523, 2488, 2730 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1177 |
| BstYI | RGATCY | 4 cut(s) | 1366, 1523, 2488, 2730 |
| Bsu15I | ATCGAT | 1 cut(s) | 1491 |
| BsuI | GTATCC | 1 cut(s) | 2609 |
| BsuTUI | ATCGAT | 1 cut(s) | 1491 |
| BtgI | CCRYGG | 1 cut(s) | 1920 |
| BtrI | CACGTC | 1 cut(s) | 238 |
| BtsI | GCAGTG | 4 cut(s) | 1220, 1781, 1839, 1936 |
| BtsIMutI | CAGTG | 9 cut(s) | 339, 755, 827, 1220, 1388, 1781, 1839, 1936, 2801 |
| Cac8I | GCNNGC | 7 cut(s) | 164, 412, 597, 786, 840, 2055, 2867 |
| CaiI | CAGNNNCTG | 4 cut(s) | 481, 659, 1718, 1859 |
| CfoI | GCGC | 1 cut(s) | 2235 |
| Cfr10I | RCCGGY | 1 cut(s) | 2373 |
| Cfr13I | GGNCC | 9 cut(s) | 319, 952, 1415, 1972, 2063, 2101, 2526, 2578, 2724 |
| ClaI | ATCGAT | 1 cut(s) | 1491 |
| CseI | GACGC | 2 cut(s) | 1205, 2641 |
| Csp6I | GTAC | 8 cut(s) | 560, 1458, 1780, 1894, 1917, 2262, 2412, 2909 |
| CviAII | CATG | 9 cut(s) | 208, 398, 785, 956, 962, 1604, 1730, 2135, 2687 |
| CviQI | GTAC | 8 cut(s) | 560, 1458, 1780, 1894, 1917, 2262, 2412, 2909 |
| DdeI | CTNAG | 9 cut(s) | 342, 511, 519, 897, 996, 1134, 1566, 1789, 2329 |
| DinI | GGCGCC | 1 cut(s) | 2234 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2887 |
| EaeI | YGGCCR | 1 cut(s) | 2585 |
| Eam1104I | CTCTTC | 3 cut(s) | 363, 492, 2466 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2887 |
| EarI | CTCTTC | 3 cut(s) | 363, 492, 2466 |
| EciI | GGCGGA | 1 cut(s) | 782 |
| Ecl136II | GAGCTC | 1 cut(s) | 979 |
| Eco130I | CCWWGG | 2 cut(s) | 1119, 2104 |
| Eco24I | GRGCYC | 1 cut(s) | 981 |
| Eco31I | GGTCTC | 1 cut(s) | 2687 |
| Eco47I | GGWCC | 1 cut(s) | 1415 |
| Eco53kI | GAGCTC | 1 cut(s) | 979 |
| Eco57I | CTGAAG | 9 cut(s) | 48, 109, 234, 681, 834, 1266, 1521, 1643, 2088 |
| EcoICRI | GAGCTC | 1 cut(s) | 979 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2063 |
| EcoRII | CCWGG | 6 cut(s) | 102, 1469, 1711, 1782, 1974, 2638 |
| EcoT14I | CCWWGG | 2 cut(s) | 1119, 2104 |
| EcoT22I | ATGCAT | 2 cut(s) | 790, 1956 |
| EcoT38I | GRGCYC | 1 cut(s) | 981 |
| EgeI | GGCGCC | 1 cut(s) | 2234 |
| EheI | GGCGCC | 1 cut(s) | 2234 |
| ErhI | CCWWGG | 2 cut(s) | 1119, 2104 |
| FaeI | CATG | 9 cut(s) | 211, 401, 788, 959, 965, 1607, 1733, 2138, 2690 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 494, 526 |
| FaqI | GGGAC | 2 cut(s) | 1452, 2336 |
| FatI | CATG | 9 cut(s) | 207, 397, 784, 955, 961, 1603, 1729, 2134, 2686 |
| FauI | CCCGC | 1 cut(s) | 477 |
| FbaI | TGATCA | 1 cut(s) | 2152 |
| FblI | GTMKAC | 1 cut(s) | 70 |
| FriOI | GRGCYC | 1 cut(s) | 981 |
| FspBI | CTAG | 4 cut(s) | 300, 411, 614, 1446 |
| GlaI | GCGC | 1 cut(s) | 2234 |
| GsaI | CCCAGC | 1 cut(s) | 1319 |
| GsuI | CTGGAG | 6 cut(s) | 833, 1028, 1492, 1667, 1786, 2497 |
| HaeII | RGCGCY | 1 cut(s) | 2236 |
| HapII | CCGG | 5 cut(s) | 1725, 2297, 2374, 2727, 2740 |
| HgaI | GACGC | 2 cut(s) | 1205, 2641 |
| HhaI | GCGC | 1 cut(s) | 2235 |
| Hin1I | GRCGYC | 1 cut(s) | 2233 |
| Hin1II | CATG | 9 cut(s) | 211, 401, 788, 959, 965, 1607, 1733, 2138, 2690 |
| Hin6I | GCGC | 1 cut(s) | 2233 |
| HinP1I | GCGC | 1 cut(s) | 2233 |
| HincII | GTYRAC | 1 cut(s) | 2881 |
| HindII | GTYRAC | 1 cut(s) | 2881 |
| HindIII | AAGCTT | 4 cut(s) | 2051, 2286, 2603, 2813 |
| HpaII | CCGG | 5 cut(s) | 1725, 2297, 2374, 2727, 2740 |
| HphI | GGTGA | 6 cut(s) | 709, 791, 1331, 1598, 2363, 2807 |
| Hpy166II | GTNNAC | 6 cut(s) | 71, 827, 1358, 2006, 2501, 2881 |
| Hpy8I | GTNNAC | 6 cut(s) | 71, 827, 1358, 2006, 2501, 2881 |
| Hpy99I | CGWCG | 2 cut(s) | 239, 2842 |
| HpyCH4III | ACNGT | 2 cut(s) | 732, 1921 |
| HpyCH4IV | ACGT | 6 cut(s) | 237, 1183, 1653, 2543, 2781, 2873 |
| HpyF3I | CTNAG | 9 cut(s) | 342, 511, 519, 897, 996, 1134, 1566, 1789, 2329 |
| HpySE526I | ACGT | 6 cut(s) | 237, 1183, 1653, 2543, 2781, 2873 |
| Hsp92I | GRCGYC | 1 cut(s) | 2233 |
| Hsp92II | CATG | 9 cut(s) | 211, 401, 788, 959, 965, 1607, 1733, 2138, 2690 |
| HspAI | GCGC | 1 cut(s) | 2233 |
| KasI | GGCGCC | 1 cut(s) | 2232 |
| KpnI | GGTACC | 3 cut(s) | 1783, 1920, 2265 |
| Ksp22I | TGATCA | 1 cut(s) | 2152 |
| LguI | GCTCTTC | 1 cut(s) | 2466 |
| LmnI | GCTCC | 5 cut(s) | 984, 1648, 1798, 1870, 2862 |
| Lsp1109I | GCAGC | 9 cut(s) | 35, 467, 468, 643, 653, 677, 1153, 1789, 2150 |
| MaeI | CTAG | 4 cut(s) | 300, 411, 614, 1446 |
| MaeII | ACGT | 6 cut(s) | 237, 1183, 1653, 2543, 2781, 2873 |
| MaeIII | GTNAC | 7 cut(s) | 697, 867, 917, 1825, 2354, 2431, 2539 |
| MbiI | CCGCTC | 1 cut(s) | 2459 |
| MfeI | CAATTG | 4 cut(s) | 359, 720, 1753, 2073 |
| MflI | RGATCY | 4 cut(s) | 1366, 1523, 2488, 2730 |
| MhlI | GDGCHC | 4 cut(s) | 981, 1653, 1688, 2008 |
| Mly113I | GGCGCC | 1 cut(s) | 2233 |
| MlyI | GAGTC | 2 cut(s) | 832, 2026 |
| MmeI | TCCRAC | 4 cut(s) | 918, 924, 1053, 2871 |
| Mph1103I | ATGCAT | 2 cut(s) | 790, 1956 |
| MroXI | GAANNNNTTC | 3 cut(s) | 133, 155, 2113 |
| MseI | TTAA | 7 cut(s) | 290, 690, 1350, 1406, 1932, 2388, 2483 |
| MslI | CAYNNNNRTG | 6 cut(s) | 402, 960, 966, 1393, 1608, 2001 |
| MspA1I | CMGCKG | 3 cut(s) | 48, 656, 1315 |
| MspI | CCGG | 5 cut(s) | 1725, 2297, 2374, 2727, 2740 |
| MspR9I | CCNGG | 7 cut(s) | 104, 1471, 1713, 1784, 1976, 2640, 2728 |
| MunI | CAATTG | 4 cut(s) | 359, 720, 1753, 2073 |
| Mva1269I | GAATGC | 2 cut(s) | 1941, 1954 |
| MvaI | CCWGG | 6 cut(s) | 104, 1471, 1713, 1784, 1976, 2640 |
| MvnI | CGCG | 2 cut(s) | 466, 2765 |
| NarI | GGCGCC | 1 cut(s) | 2233 |
| NciI | CCSGG | 1 cut(s) | 2728 |
| NheI | GCTAGC | 1 cut(s) | 410 |
| NlaIII | CATG | 9 cut(s) | 211, 401, 788, 959, 965, 1607, 1733, 2138, 2690 |
| NmeAIII | GCCGAG | 1 cut(s) | 1448 |
| NmuCI | GTSAC | 4 cut(s) | 697, 917, 2431, 2539 |
| NsiI | ATGCAT | 2 cut(s) | 790, 1956 |
| NspI | RCATGY | 3 cut(s) | 788, 965, 1607 |
| NspV | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| PaeI | GCATGC | 1 cut(s) | 788 |
| PasI | CCCWGGG | 1 cut(s) | 1975 |
| PciSI | GCTCTTC | 1 cut(s) | 2466 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1462 |
| PctI | GAATGC | 2 cut(s) | 1941, 1954 |
| PdmI | GAANNNNTTC | 3 cut(s) | 133, 155, 2113 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1677, 1718 |
| PfoI | TCCNGGA | 1 cut(s) | 2638 |
| PleI | GAGTC | 2 cut(s) | 831, 2025 |
| PluTI | GGCGCC | 1 cut(s) | 2236 |
| PpsI | GAGTC | 2 cut(s) | 831, 2025 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2679 |
| PshBI | ATTAAT | 1 cut(s) | 290 |
| PsiI | TTATAA | 1 cut(s) | 2898 |
| Psp124BI | GAGCTC | 1 cut(s) | 981 |
| Psp6I | CCWGG | 6 cut(s) | 102, 1469, 1711, 1782, 1974, 2638 |
| PspFI | CCCAGC | 1 cut(s) | 1315 |
| PspGI | CCWGG | 6 cut(s) | 102, 1469, 1711, 1782, 1974, 2638 |
| PspPI | GGNCC | 9 cut(s) | 319, 952, 1415, 1972, 2063, 2101, 2526, 2578, 2724 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 543, 575 |
| PstNI | CAGNNNCTG | 4 cut(s) | 481, 659, 1718, 1859 |
| PsuI | RGATCY | 4 cut(s) | 1366, 1523, 2488, 2730 |
| PvuII | CAGCTG | 1 cut(s) | 656 |
| RsaI | GTAC | 8 cut(s) | 561, 1459, 1781, 1895, 1918, 2263, 2413, 2910 |
| RsaNI | GTAC | 8 cut(s) | 560, 1458, 1780, 1894, 1917, 2262, 2412, 2909 |
| RseI | CAYNNNNRTG | 6 cut(s) | 402, 960, 966, 1393, 1608, 2001 |
| SacI | GAGCTC | 1 cut(s) | 981 |
| SapI | GCTCTTC | 1 cut(s) | 2466 |
| SaqAI | TTAA | 7 cut(s) | 290, 690, 1350, 1406, 1932, 2388, 2483 |
| Sau96I | GGNCC | 9 cut(s) | 319, 952, 1415, 1972, 2063, 2101, 2526, 2578, 2724 |
| SchI | GAGTC | 2 cut(s) | 832, 2026 |
| ScrFI | CCNGG | 7 cut(s) | 104, 1471, 1713, 1784, 1976, 2640, 2728 |
| SduI | GDGCHC | 4 cut(s) | 981, 1653, 1688, 2008 |
| SfcI | CTRYAG | 2 cut(s) | 651, 1560 |
| SfoI | GGCGCC | 1 cut(s) | 2234 |
| SfuI | TTCGAA | 4 cut(s) | 137, 1187, 2159, 2206 |
| SinI | GGWCC | 1 cut(s) | 1415 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 402, 960, 966, 1393, 1608, 2001 |
| SmlI | CTYRAG | 4 cut(s) | 449, 1204, 1869, 2493 |
| SmoI | CTYRAG | 4 cut(s) | 449, 1204, 1869, 2493 |
| SphI | GCATGC | 1 cut(s) | 788 |
| SspDI | GGCGCC | 1 cut(s) | 2232 |
| SspI | AATATT | 2 cut(s) | 2149, 2318 |
| SspMI | CTAG | 4 cut(s) | 300, 411, 614, 1446 |
| SstI | GAGCTC | 1 cut(s) | 981 |
| StyD4I | CCNGG | 7 cut(s) | 102, 1469, 1711, 1782, 1974, 2638, 2726 |
| StyI | CCWWGG | 2 cut(s) | 1119, 2104 |
| TaaI | ACNGT | 2 cut(s) | 732, 1921 |
| TaiI | ACGT | 6 cut(s) | 240, 1186, 1656, 2546, 2784, 2876 |
| TaqI | TCGA | 8 cut(s) | 137, 678, 1187, 1491, 2159, 2206, 2826, 2840 |
| TatI | WGTACW | 1 cut(s) | 1893 |
| TauI | GCSGC | 2 cut(s) | 48, 169 |
| Tru1I | TTAA | 7 cut(s) | 290, 690, 1350, 1406, 1932, 2388, 2483 |
| Tru9I | TTAA | 7 cut(s) | 290, 690, 1350, 1406, 1932, 2388, 2483 |
| TscAI | CASTG | 9 cut(s) | 346, 762, 834, 1227, 1395, 1781, 1839, 1943, 2808 |
| TseFI | GTSAC | 4 cut(s) | 697, 917, 2431, 2539 |
| TseI | GCWGC | 9 cut(s) | 48, 455, 481, 641, 656, 665, 1166, 1802, 2138 |
| Tsp45I | GTSAC | 4 cut(s) | 697, 917, 2431, 2539 |
| TspGWI | ACGGA | 2 cut(s) | 1375, 1454 |
| TspRI | CASTG | 9 cut(s) | 346, 762, 834, 1227, 1395, 1781, 1839, 1943, 2808 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1677, 1718 |
| VneI | GTGCAC | 1 cut(s) | 2004 |
| VpaK11BI | GGWCC | 1 cut(s) | 1415 |
| VspI | ATTAAT | 1 cut(s) | 290 |
| XapI | RAATTY | 5 cut(s) | 1013, 1452, 2028, 2092, 2347 |
| XbaI | TCTAGA | 1 cut(s) | 613 |
| XceI | RCATGY | 3 cut(s) | 788, 965, 1607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2028 |
| XmiI | GTMKAC | 1 cut(s) | 70 |
| XmnI | GAANNNNTTC | 3 cut(s) | 133, 155, 2113 |
| XspI | CTAG | 4 cut(s) | 300, 411, 614, 1446 |
| Zsp2I | ATGCAT | 2 cut(s) | 790, 1956 |