pycom17g07440

cyclin-B1-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014438
Physical Location & Seq
Reverse (-)
5346063 .. 5348275
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
ATGATGGGCCTGAATCAAGACTACATGGGCTCGCATCTGAAAACAAACCCAACCCCAACCCCCAACCCCCAACCCCGCCCACTATATCTTGCAGCGAAGTCTGTACAAAATACATTGCTTGCTGTAAAAGAAGAAGGGAGAACCAGAGAAAGCAAAATGGAGGCACCGAAGACGATCGAGCACCAAATCGGAGGAATCCAGAACGACGCCCTTCGGTTCGGACTTCACGGCGTCAAGAGCGACCTCGTCGGCGCTCACCCTGTCGAATCTGCTTTGGAATCGGCGAAGGTAACTCAGGAGCAGATAAATAGGAAAATCTTGGGGTACACTTATGGAAGTGCGTTTCCACTGAAGATCGATCTCGAAAGGCAAATCCTTTCTCGATTCCAGAGGCCTGCTGGACCAATTCCTTCTTCAATGTTGGGTTTGGAGGCTATGACCGGAAGATTGGATGATTTTGGCTTTGAGGATTACCTGAATGACCCCCGGGAATCTGAAACCTTCCGGCCTGTGGACACACATCATGCAATGGAAGTTCGCCTTGGACTTTCAAAGGGTCCAGTCACCCCAAGCTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
UMP1

Protein Analysis

194

Amino Acids

21.41

Weight (kDa)

6.6

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UMP1 PF05348 67 - 181 1.3e-31 Proteasome maturation factor UMP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014438)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67250 AT5G38650
fragaria_vesca FvH4_6g45420
malus_domestica MD01G1088800.v1.1 MD05G1212600.v1.1 MD09G1083200.v1.1 MD17G1073500.v1.1
prunus_persica Prupe.3G240300_v2.0.a1 Prupe.5G161800_v2.0.a1
pyrus_communis pycom09g00960 pycom17g07440
rosa_chinensis RchiOBHm_Chr2g0163251
rosa_roxburghii Rroxscaffold_2G00087440
rosa_rugosa Rorug02G0501600
rosa_samantha Rh2BG580600 Rh2DG590500
rosa_wichuraiana Rw2G047030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 2 cut(s) 207, 231
AfaI GTAC 2 cut(s) 105, 326
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 2 cut(s) 417, 552
AjuI GAANNNNNNNTTGG 4 cut(s) 397, 429, 525, 557
AluBI AGCT 1 cut(s) 573
AluI AGCT 1 cut(s) 573
Alw21I GWGCWC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 486
AoxI GGCC 3 cut(s) 7, 392, 506
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 3 cut(s) 7, 401, 557
AsuC2I CCSGG 2 cut(s) 487, 488
AsuHPI GGTGA 2 cut(s) 248, 556
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 2 cut(s) 401, 557
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 176
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 244
BcnI CCSGG 2 cut(s) 487, 488
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 487, 488
Bme18I GGWCC 2 cut(s) 401, 557
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 3 cut(s) 7, 401, 557
BmiI GGNNCC 2 cut(s) 165, 558
BmrFI CCNGG 2 cut(s) 487, 488
BmsI GCATC 1 cut(s) 43
BpiI GAAGAC 1 cut(s) 176
BpuMI CCSGG 2 cut(s) 487, 488
Bsa29I ATCGAT 1 cut(s) 357
BsaHI GRCGYC 2 cut(s) 207, 231
BsaJI CCNNGG 3 cut(s) 485, 486, 541
BsaWI WCCGGW 1 cut(s) 440
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 2 cut(s) 113, 534
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 485, 486, 541
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 2 cut(s) 113, 534
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 9, 394, 508
BshNI GGYRCC 1 cut(s) 163
BshVI ATCGAT 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 486
BsiSI CCGG 3 cut(s) 441, 487, 505
BslI CCNNNNNNNGG 1 cut(s) 511
BsnI GGCC 3 cut(s) 9, 394, 508
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 2 cut(s) 32, 183
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 3 cut(s) 174, 354, 358
BspACI CCGC 1 cut(s) 76
BspANI GGCC 3 cut(s) 9, 394, 508
BspCNI CTCAG 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 165, 558
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 113, 534
BsrGI TGTACA 1 cut(s) 103
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 3 cut(s) 485, 486, 541
BssMI GATC 3 cut(s) 174, 354, 358
BssNI GRCGYC 2 cut(s) 207, 231
BssT1I CCWWGG 1 cut(s) 541
BstACI GRCGYC 2 cut(s) 207, 231
BstAUI TGTACA 1 cut(s) 103
BstC8I GCNNGC 3 cut(s) 32, 120, 396
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 457
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 177, 357, 361
BstMBI GATC 3 cut(s) 174, 354, 358
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 485, 486
BstV1I GCAGC 1 cut(s) 104
BstV2I GAAGAC 1 cut(s) 176
Bsu15I ATCGAT 1 cut(s) 357
BsuRI GGCC 3 cut(s) 9, 394, 508
BsuTUI ATCGAT 1 cut(s) 357
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 3 cut(s) 32, 120, 396
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 7, 401, 557
Cfr9I CCCGGG 1 cut(s) 486
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 2 cut(s) 215, 220
Csp6I GTAC 2 cut(s) 104, 325
CviAII CATG 2 cut(s) 25, 524
CviJI RGCY 7 cut(s) 9, 30, 394, 434, 462, 508, 573
CviKI_1 RGCY 7 cut(s) 9, 30, 394, 434, 462, 508, 573
CviQI GTAC 2 cut(s) 104, 325
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 176, 356, 360
DpnII GATC 3 cut(s) 174, 354, 358
Eco130I CCWWGG 1 cut(s) 541
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 401, 557
Eco57I CTGAAG 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 2 cut(s) 28, 527
FaiI YATR 6 cut(s) 26, 85, 333, 437, 525, 578
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 2 cut(s) 24, 523
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 93
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 3 cut(s) 9, 394, 508
HapII CCGG 3 cut(s) 441, 487, 505
HgaI GACGC 2 cut(s) 215, 220
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 2 cut(s) 207, 231
Hin1II CATG 2 cut(s) 28, 527
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 571
HinfI GANTC 6 cut(s) 13, 195, 266, 278, 384, 491
HpaII CCGG 3 cut(s) 441, 487, 505
HphI GGTGA 2 cut(s) 248, 556
Hpy166II GTNNAC 2 cut(s) 327, 514
Hpy188I TCNGA 4 cut(s) 39, 191, 221, 496
Hpy188III TCNNGA 7 cut(s) 17, 199, 235, 296, 362, 381, 388
Hpy8I GTNNAC 2 cut(s) 327, 514
Hpy99I CGWCG 2 cut(s) 209, 251
HpyAV CCTTC 5 cut(s) 128, 221, 280, 420, 511
HpyCH4V TGCA 2 cut(s) 92, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 207, 231
Hsp92II CATG 2 cut(s) 28, 527
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 174, 354, 358
LmnI GCTCC 1 cut(s) 298
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 43
MaeIII GTNAC 2 cut(s) 289, 562
MalI GATC 3 cut(s) 176, 356, 360
MboI GATC 3 cut(s) 174, 354, 358
MboII GAAGA 5 cut(s) 143, 181, 364, 405, 456
MhlI GDGCHC 2 cut(s) 32, 183
MluCI AATT 1 cut(s) 405
MnlI CCTC 6 cut(s) 154, 185, 254, 384, 424, 460
MspI CCGG 3 cut(s) 441, 487, 505
MspR9I CCNGG 2 cut(s) 487, 488
MwoI GCNNNNNNNGC 1 cut(s) 237
NciI CCSGG 2 cut(s) 487, 488
NdeII GATC 3 cut(s) 174, 354, 358
NlaIII CATG 2 cut(s) 28, 527
NlaIV GGNNCC 2 cut(s) 165, 558
NmuCI GTSAC 1 cut(s) 562
PceI AGGCCT 1 cut(s) 394
PfeI GAWTC 6 cut(s) 13, 195, 266, 278, 384, 491
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 94
Ple19I CGATCG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 165, 558
PspPI GGNCC 3 cut(s) 7, 401, 557
PsyI GACNNNGTC 1 cut(s) 245
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 2 cut(s) 105, 326
RsaNI GTAC 2 cut(s) 104, 325
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 174, 354, 358
Sau96I GGNCC 3 cut(s) 7, 401, 557
ScrFI CCNGG 2 cut(s) 487, 488
SduI GDGCHC 2 cut(s) 32, 183
SetI ASST 5 cut(s) 246, 291, 477, 503, 575
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 2 cut(s) 401, 557
SmaI CCCGGG 1 cut(s) 488
Sse9I AATT 1 cut(s) 405
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 1 cut(s) 76
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 485, 486
StyI CCWWGG 1 cut(s) 541
TaqI TCGA 5 cut(s) 177, 264, 357, 363, 382
TasI AATT 1 cut(s) 405
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 6 cut(s) 13, 195, 266, 278, 384, 491
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 562
TspMI CCCGGG 1 cut(s) 486
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 401, 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XmaI CCCGGG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.