Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Reverse (-)

6001576 .. 6004399

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGAATGGGGTAGAGAGAGACTGTGGGTTGGTGCTGTTTAGCGACGATGAGCTGAGAGAGATGAGCGGGGTGAAGAGAGGTCCGGACCATATGGAGGTCACGTGCGGCTGCACCAGCCACAGATATGGCGATGCTGTTGGGAGGCTTAGGGTTTTCGTTAATGGAGACCTCGAAATCACCTGCGAGTGCACCCCTGGCTGTCAGGAAGGAAAACTGACTCCTGCTGCATTTGAAAAGCATTCTGGAAGAGAGACTGCTAGGAAATGGAAAAATAATGTTTGGGTGATTGATAACGGGAAGAAGGTTCCGCTGTGTAAAACGGTGCTGCTCAAGTACCATAACGAGGCATCAAAAAGTGCTAATGGTTCCCACAGATCCAACAATGGACGTGTTTGTCACCATGATGAGTTTGTTTCCTGTACTAGGTGCAACAAGGAGCGCAGGTTTCGCCTCCGGACAAAAGAGGAATGTCGGGTTTACCATGATGCTTTGGCTGATGTGAATTGGAAATGTGCTGATCTGCCGTATGACAAAATAACATGTGATGATGAAGAAGAACGAGCAAGTCGAAGGGTATATAGAGGCTGCAGCCGTTCTCCGACATGCCATGGCTGTACTTCTTGTGTGTGCTTTGGCTGCGAAATCTGTCGTTTCTCGGATTGCAGCTGCCAGACCTGCACTGACTTCACAAGCAATGCTAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

237

Amino Acids

26.63

Weight (kDa)

7.98

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	22 - 114	4.7e-44	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	134 - 231	1.4e-45	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
AasI	GACNNNNNNGTC	1 cut(s)	396
Acc36I	ACCTGC	3 cut(s)	191, 435, 686
AccBSI	CCGCTC	1 cut(s)	69
AccIII	TCCGGA	2 cut(s)	85, 456
AciI	CCGC	3 cut(s)	69, 108, 311
AclWI	GGATC	1 cut(s)	372
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	3 cut(s)	338, 424, 619
AfiI	CCNNNNNNNGG	3 cut(s)	97, 346, 426
AflIII	ACRYGT	2 cut(s)	391, 542
AgsI	TTSAA	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	55, 669
AluI	AGCT	2 cut(s)	55, 669
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	3 cut(s)	15, 162, 248
Alw44I	GTGCAC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	372
Aor13HI	TCCGGA	2 cut(s)	85, 456
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	8 cut(s)	111, 227, 328, 588, 591, 639, 666, 669
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	83, 88
AsuHPI	GGTGA	4 cut(s)	85, 172, 298, 392
AvaII	GGWCC	2 cut(s)	83, 88
BaeGI	GKGCMC	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	8 cut(s)	98, 214, 315, 575, 603, 626, 656, 678
BceAI	ACGGC	2 cut(s)	511, 579
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	3 cut(s)	15, 162, 248
BfaI	CTAG	2 cut(s)	261, 426
BfmI	CTRYAG	1 cut(s)	589
BfuAI	ACCTGC	3 cut(s)	191, 435, 686
BisI	GCNGC	9 cut(s)	109, 112, 228, 329, 589, 592, 640, 667, 670
BlsI	GCNGC	9 cut(s)	110, 113, 229, 330, 590, 593, 641, 668, 671
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	83, 88
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	83, 88
BmiI	GGNNCC	2 cut(s)	309, 370
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	124, 359, 478
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	196, 610
BsaWI	WCCGGW	2 cut(s)	85, 456
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 431, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 346, 426
Bse3DI	GCAATG	1 cut(s)	703
BseAI	TCCGGA	2 cut(s)	85, 456
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	196, 610
BseLI	CCNNNNNNNGG	3 cut(s)	97, 346, 426
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	8 cut(s)	98, 214, 315, 575, 603, 626, 656, 678
BsgI	GTGCAG	2 cut(s)	97, 664
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	86, 457
BslI	CCNNNNNNNGG	3 cut(s)	97, 346, 426
BsmAI	GTCTC	3 cut(s)	15, 162, 248
BsmI	GAATGC	1 cut(s)	241
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp13I	TCCGGA	2 cut(s)	85, 456
Bsp143I	GATC	2 cut(s)	377, 520
Bsp19I	CCATGG	1 cut(s)	610
BspACI	CCGC	3 cut(s)	69, 108, 311
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	2 cut(s)	85, 456
BspLI	GGNNCC	2 cut(s)	309, 370
BspMAI	CTGCAG	1 cut(s)	593
BspMI	ACCTGC	3 cut(s)	191, 435, 686
BspPI	GGATC	1 cut(s)	372
BspTNI	GGTCTC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	703
BssECI	CCNNGG	2 cut(s)	196, 610
BssMI	GATC	2 cut(s)	377, 520
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	26, 325
Bst6I	CTCTTC	2 cut(s)	71, 244
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	56, 149
BstDSI	CCRYGG	1 cut(s)	610
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	2 cut(s)	380, 523
BstMAI	GTCTC	3 cut(s)	15, 162, 248
BstMBI	GATC	2 cut(s)	377, 520
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 198, 450, 639, 678
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	2 cut(s)	546, 609
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	589
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	8 cut(s)	98, 214, 315, 575, 603, 626, 656, 678
BstX2I	RGATCY	1 cut(s)	377
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	610
BtgZI	GCGATG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	681
BveI	ACCTGC	3 cut(s)	191, 435, 686
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	83, 88
Csp6I	GTAC	3 cut(s)	337, 423, 618
CviAII	CATG	5 cut(s)	404, 485, 543, 606, 611
CviQI	GTAC	3 cut(s)	337, 423, 618
DdeI	CTNAG	2 cut(s)	56, 149
DpnI	GATC	2 cut(s)	379, 522
DpnII	GATC	2 cut(s)	377, 520
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	71, 244
EarI	CTCTTC	2 cut(s)	71, 244
Eco130I	CCWWGG	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	83, 88
Eco72I	CACGTG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	5 cut(s)	407, 488, 546, 609, 614
FatI	CATG	5 cut(s)	403, 484, 542, 605, 610
FauI	CCCGC	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	93
Fnu4HI	GCNGC	9 cut(s)	109, 112, 228, 329, 589, 592, 640, 667, 670
Fsp4HI	GCNGC	9 cut(s)	109, 112, 228, 329, 589, 592, 640, 667, 670
FspBI	CTAG	2 cut(s)	261, 426
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	9 cut(s)	109, 112, 228, 329, 589, 592, 640, 667, 670
HapII	CCGG	2 cut(s)	86, 457
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	407, 488, 546, 609, 614
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	86, 457
HphI	GGTGA	4 cut(s)	85, 172, 298, 392
Hpy166II	GTNNAC	2 cut(s)	192, 481
Hpy188I	TCNGA	2 cut(s)	603, 661
Hpy188III	TCNNGA	4 cut(s)	86, 206, 246, 457
Hpy8I	GTNNAC	2 cut(s)	192, 481
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	203, 298, 567
HpyCH4III	ACNGT	2 cut(s)	26, 325
HpyCH4IV	ACGT	2 cut(s)	104, 391
HpyCH4V	TGCA	7 cut(s)	114, 192, 230, 432, 591, 666, 681
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 198, 450, 639, 678
HpyF3I	CTNAG	2 cut(s)	56, 149
HpySE526I	ACGT	2 cut(s)	104, 391
Hsp92II	CATG	5 cut(s)	407, 488, 546, 609, 614
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	2 cut(s)	85, 456
Kzo9I	GATC	2 cut(s)	377, 520
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	8 cut(s)	98, 214, 315, 575, 603, 626, 656, 678
LweI	GCATC	3 cut(s)	124, 359, 478
MaeI	CTAG	2 cut(s)	261, 426
MaeII	ACGT	2 cut(s)	104, 391
MaeIII	GTNAC	2 cut(s)	100, 398
MalI	GATC	2 cut(s)	379, 522
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	2 cut(s)	377, 520
MboII	GAAGA	5 cut(s)	88, 261, 313, 566, 569
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	1 cut(s)	505
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	405, 626
MnlI	CCTC	8 cut(s)	74, 91, 138, 182, 340, 460, 464, 578
MroI	TCCGGA	2 cut(s)	85, 456
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	126, 405
MspA1I	CMGCKG	2 cut(s)	313, 669
MspI	CCGG	2 cut(s)	86, 457
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	5 cut(s)	117, 198, 450, 639, 678
NcoI	CCATGG	1 cut(s)	610
NdeI	CATATG	1 cut(s)	93
NdeII	GATC	2 cut(s)	377, 520
NlaIII	CATG	5 cut(s)	407, 488, 546, 609, 614
NlaIV	GGNNCC	2 cut(s)	309, 370
NmuCI	GTSAC	2 cut(s)	100, 398
NspI	RCATGY	2 cut(s)	546, 609
PaqCI	CACCTGC	1 cut(s)	191
PciI	ACATGT	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	1 cut(s)	241
PkrI	GCNGC	9 cut(s)	110, 113, 229, 330, 590, 593, 641, 668, 671
PleI	GAGTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	105
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	196
PspCI	CACGTG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	309, 370
PspPI	GGNCC	2 cut(s)	83, 88
PstI	CTGCAG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	669
RsaI	GTAC	3 cut(s)	338, 424, 619
RsaNI	GTAC	3 cut(s)	337, 423, 618
RseI	CAYNNNNRTG	2 cut(s)	126, 405
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	9 cut(s)	109, 112, 228, 329, 589, 592, 640, 667, 670
Sau3AI	GATC	2 cut(s)	377, 520
Sau96I	GGNCC	2 cut(s)	83, 88
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	3 cut(s)	124, 359, 478
SfcI	CTRYAG	1 cut(s)	589
SinI	GGWCC	2 cut(s)	83, 88
SmiMI	CAYNNNNRTG	2 cut(s)	126, 405
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	1 cut(s)	505
SsiI	CCGC	3 cut(s)	69, 108, 311
SspMI	CTAG	2 cut(s)	261, 426
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	26, 325
TaiI	ACGT	2 cut(s)	107, 394
TaqI	TCGA	2 cut(s)	174, 571
TasI	AATT	1 cut(s)	505
TatI	WGTACW	2 cut(s)	422, 617
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	2 cut(s)	100, 398
TseI	GCWGC	8 cut(s)	111, 227, 328, 588, 591, 639, 666, 669
Tsp45I	GTSAC	2 cut(s)	100, 398
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	688
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	83, 88
XagI	CCTNNNNNAGG	1 cut(s)	424
XceI	RCATGY	2 cut(s)	546, 609
XspI	CTAG	2 cut(s)	261, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.