pycom17g09010

SPX and EXS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003754
Physical Location & Seq
Forward (+)
6755576 .. 6760082
4507 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1404 bp
ATGTTTGGAGGTGTTGCGACAGCGCCTTCCAATAGTCCTCACTTAAGAAAGTCGGGTACAAGTGATCTCGAAAATGATGCAGAGGAGGGCTTCTTGCGTCTGATAGAGGGAAACGATAGGAAGGGAGGAAACGTGCCAAGCATACCAATGAGTACTGCTGCAATAATGCCATCTCCAGCTATGTTATGGAGATTTAAGGTCCTACTGTTCTTTGTATGGGGTTTCATTTGTTGCAAGGTTGGATGGGATTCTGTCATGAGGATGAGCGTGGATCTGCGAGATTTGTTTCTATATGAGGCATTTTTGTATTATAATCCTCTACTTCTTGTGACTATGATGGTTTGGTTTTGGGGAGTCAATCTATGGGTTTTTGCTCAGGGCAATGTAAACTATGCCAAAATTTTTGATCTTGATCAAAATCATTTGACCCACAGAGAAATATGGATGTGTGCGACCTGGATGACAATTGTTGTGCCGACAAGCATGACAGCATATCTTTATCTCTATTCGCATGGAGAAGTGTCACTTGCTGCATCACAACCAGTACTATTGTATGCTGCTGTTGCAATGCTTTTGATATTCCCTTTTGACATTTTCTATTTGTCATCTCGCTTTTACTTGTTAAGGACTCTTTGGCGTATAGTTCTCCCATTACAGGCAATATCATTTTCTGACTTTTTCCTGGCTGATATTTTGACCTCCATGTCTAAGGTGCTTTCAGATTTGGAGCGATCAGTATGTCGAATGGTCCATCGACAGGTTGCCACTATTGCATGGTTTGAAGCTGACTCAGTTTGTGGAAGTCATTCTGTTGCAATCCCTGTTGTTCTTGTTTTGCCTTACCTTTTTCGTTTGTTCCAATGTCTTCGACAATATAAGGATACTGGGGAGAAAACAACCCTTCTAAATGCTTTGAAGTATTCTACTGCAGTACCTGTGATTTTTCTTTCAGCCCTCAAATATCATGTCTTCCCTGAAAAGTGGACGACCTTTTATCGGCCCCTGTGGCTTCTCTCAGGTGTTTTGAACTCCTTGTACTCGTTCTACTGGGACGTGACTAGAGATTGGGACTTAAGTGGTTTCACTCGGATTTTCAAGTTCAGCAAACAACATTTCTCGTCAAACCTCATACATGGACGGAAATGGGTTTACTTCTGGGTGATAGGTAGCAACCTGATTCTGCGTTGTACCTGGACATACAAGCTCTCTTCCCACCTTCGCCACAATTACCTTACCGTGTTTGCAATCACTGCCTTGGAGATTTTCCGCCGCTTCCAATGGGTTTTCTTCCGTGTAGAAAACGAGGTGAACAAGATGAGCTCGAAGTCAAACATTCAGCTTTCCATGATAGACAACCCAAATGAGGAAGACAGATTACTCGTCTCTAATGGCCACAGCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EXS

Protein Analysis

468

Amino Acids

54.25

Weight (kDa)

8.92

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXS PF03124 101 - 436 1e-93 EXS family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AasI GACNNNNNNGTC 1 cut(s) 703
AciI CCGC 2 cut(s) 1267, 1270
AclWI GGATC 1 cut(s) 279
AcoI YGGCCR 1 cut(s) 1390
AcsI RAATTY 1 cut(s) 399
AdeI CACNNNGTG 1 cut(s) 1399
AfaI GTAC 6 cut(s) 58, 154, 546, 933, 1037, 1189
AfiI CCNNNNNNNGG 4 cut(s) 655, 757, 996, 1363
AflII CTTAAG 2 cut(s) 43, 1072
AgsI TTSAA 4 cut(s) 782, 916, 1027, 1096
AjiI CACGTC 1 cut(s) 1054
AjnI CCWGG 3 cut(s) 455, 681, 1190
AluBI AGCT 5 cut(s) 179, 785, 1204, 1320, 1339
AluI AGCT 5 cut(s) 179, 785, 1204, 1320, 1339
Alw21I GWGCWC 1 cut(s) 1322
Alw26I GTCTC 1 cut(s) 1387
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 935
AoxI GGCC 2 cut(s) 998, 1390
ApeKI GCWGC 3 cut(s) 158, 530, 557
ApoI RAATTY 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 951, 983
Asp700I GAANNNNTTC 1 cut(s) 805
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 199, 748, 999
AsuHPI GGTGA 2 cut(s) 1171, 1318
AvaII GGWCC 2 cut(s) 199, 748
BaeI ACNNNNGTAYC 2 cut(s) 915, 948
BalI TGGCCA 1 cut(s) 1392
BanII GRGCYC 1 cut(s) 1322
BarI GAAGNNNNNNTAC 2 cut(s) 1359, 1391
BbsI GAAGAC 3 cut(s) 857, 961, 1374
Bbv12I GWGCWC 1 cut(s) 1322
BbvI GCAGC 3 cut(s) 145, 517, 544
BccI CCATC 4 cut(s) 178, 237, 331, 759
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 3 cut(s) 457, 683, 1192
BciVI GTATCC 1 cut(s) 874
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 1387
BfaI CTAG 1 cut(s) 1059
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 1 cut(s) 26
BfrI CTTAAG 2 cut(s) 43, 1072
BfuI GTATCC 1 cut(s) 874
BglI GCCNNNNNGGC 1 cut(s) 1006
BisI GCNGC 4 cut(s) 159, 531, 558, 1270
BlsI GCNGC 4 cut(s) 160, 532, 559, 1271
BmcAI AGTACT 2 cut(s) 154, 546
Bme1390I CCNGG 3 cut(s) 457, 683, 1192
Bme18I GGWCC 2 cut(s) 199, 748
BmgBI CACGTC 1 cut(s) 1054
BmgT120I GGNCC 3 cut(s) 199, 748, 999
BmiI GGNNCC 1 cut(s) 1001
BmrFI CCNGG 3 cut(s) 457, 683, 1192
BmrI ACTGGG 2 cut(s) 894, 1057
BmsI GCATC 2 cut(s) 67, 542
BmuI ACTGGG 2 cut(s) 894, 1057
BpiI GAAGAC 3 cut(s) 857, 961, 1374
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 375
BsaBI GATNNNNATC 2 cut(s) 411, 417
BsaJI CCNNGG 1 cut(s) 1254
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 4 cut(s) 655, 757, 996, 1363
Bse1I ACTGG 3 cut(s) 542, 889, 1052
Bse3DI GCAATG 2 cut(s) 388, 573
Bse8I GATNNNNATC 2 cut(s) 411, 417
BseBI CCWGG 3 cut(s) 457, 683, 1192
BseDI CCNNGG 1 cut(s) 1254
BseGI GGATG 4 cut(s) 248, 267, 450, 465
BseJI GATNNNNATC 2 cut(s) 411, 417
BseLI CCNNNNNNNGG 4 cut(s) 655, 757, 996, 1363
BseMI GCAATG 2 cut(s) 388, 573
BseMII CTCAG 3 cut(s) 389, 804, 1029
BseNI ACTGG 3 cut(s) 542, 889, 1052
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 3 cut(s) 145, 517, 544
BshFI GGCC 2 cut(s) 1000, 1392
BsiHKAI GWGCWC 1 cut(s) 1322
BslFI GGGAC 2 cut(s) 1064, 1082
BslI CCNNNNNNNGG 4 cut(s) 655, 757, 996, 1363
BsmAI GTCTC 1 cut(s) 1387
BsmBI CGTCTC 1 cut(s) 1387
BsmFI GGGAC 2 cut(s) 1064, 1082
BsnI GGCC 2 cut(s) 1000, 1392
Bsp1286I GDGCHC 1 cut(s) 1322
Bsp143I GATC 5 cut(s) 64, 271, 406, 412, 731
BspACI CCGC 2 cut(s) 1267, 1270
BspANI GGCC 2 cut(s) 1000, 1392
BspCNI CTCAG 3 cut(s) 388, 803, 1028
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 1001
BspMAI CTGCAG 1 cut(s) 931
BspPI GGATC 1 cut(s) 279
BspTI CTTAAG 2 cut(s) 43, 1072
BsrDI GCAATG 2 cut(s) 388, 573
BsrI ACTGG 3 cut(s) 542, 889, 1052
BssECI CCNNGG 1 cut(s) 1254
BssMI GATC 5 cut(s) 64, 271, 406, 412, 731
BssT1I CCWWGG 1 cut(s) 1254
Bst2UI CCWGG 3 cut(s) 457, 683, 1192
Bst4CI ACNGT 2 cut(s) 207, 1237
Bst6I CTCTTC 1 cut(s) 1213
BstAFI CTTAAG 2 cut(s) 43, 1072
BstAPI GCANNNNNTGC 1 cut(s) 1250
BstDEI CTNAG 4 cut(s) 375, 708, 790, 1015
BstF5I GGATG 4 cut(s) 248, 267, 450, 465
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 67, 274, 409, 415, 734
BstMAI GTCTC 1 cut(s) 1387
BstMBI GATC 5 cut(s) 64, 271, 406, 412, 731
BstMWI GCNNNNNNNGC 4 cut(s) 563, 770, 1006, 1250
BstNI CCWGG 3 cut(s) 457, 683, 1192
BstSCI CCNGG 3 cut(s) 455, 681, 1190
BstSFI CTRYAG 1 cut(s) 927
BstV1I GCAGC 3 cut(s) 145, 517, 544
BstV2I GAAGAC 3 cut(s) 857, 961, 1374
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 2 cut(s) 1000, 1392
BtrI CACGTC 1 cut(s) 1054
BtsCI GGATG 4 cut(s) 248, 267, 450, 465
BtsI GCAGTG 1 cut(s) 1248
BtsIMutI CAGTG 1 cut(s) 1248
CaiI CAGNNNCTG 1 cut(s) 935
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 199, 748, 999
CseI GACGC 1 cut(s) 86
Csp6I GTAC 6 cut(s) 57, 153, 545, 932, 1036, 1188
CviAII CATG 8 cut(s) 256, 484, 512, 703, 774, 965, 1133, 1345
CviQI GTAC 6 cut(s) 57, 153, 545, 932, 1036, 1188
DdeI CTNAG 4 cut(s) 375, 708, 790, 1015
DpnI GATC 5 cut(s) 66, 273, 408, 414, 733
DpnII GATC 5 cut(s) 64, 271, 406, 412, 731
DraIII CACNNNGTG 1 cut(s) 1399
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 1 cut(s) 1390
Eam1104I CTCTTC 1 cut(s) 1213
EarI CTCTTC 1 cut(s) 1213
EciI GGCGGA 1 cut(s) 1256
Ecl136II GAGCTC 1 cut(s) 1320
Eco130I CCWWGG 1 cut(s) 1254
Eco24I GRGCYC 1 cut(s) 1322
Eco47I GGWCC 2 cut(s) 199, 748
Eco53kI GAGCTC 1 cut(s) 1320
EcoICRI GAGCTC 1 cut(s) 1320
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 455, 681, 1190
EcoT14I CCWWGG 1 cut(s) 1254
EcoT38I GRGCYC 1 cut(s) 1322
ErhI CCWWGG 1 cut(s) 1254
Esp3I CGTCTC 1 cut(s) 1387
FaeI CATG 8 cut(s) 259, 487, 515, 706, 777, 968, 1136, 1348
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 2 cut(s) 1064, 1082
FatI CATG 8 cut(s) 255, 483, 511, 702, 773, 964, 1132, 1344
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 159, 531, 558, 1270
FokI GGATG 4 cut(s) 255, 274, 457, 472
FriOI GRGCYC 1 cut(s) 1322
Fsp4HI GCNGC 4 cut(s) 159, 531, 558, 1270
FspBI CTAG 1 cut(s) 1059
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 159, 531, 558, 1270
GsuI CTGGAG 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 2 cut(s) 1000, 1392
HgaI GACGC 1 cut(s) 86
HhaI GCGC 1 cut(s) 25
Hin1II CATG 8 cut(s) 259, 487, 515, 706, 777, 968, 1136, 1348
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 5 cut(s) 248, 354, 628, 788, 1177
HphI GGTGA 2 cut(s) 1171, 1318
Hpy166II GTNNAC 4 cut(s) 388, 984, 1150, 1309
Hpy188I TCNGA 4 cut(s) 102, 673, 721, 1089
Hpy188III TCNNGA 3 cut(s) 68, 256, 410
Hpy8I GTNNAC 4 cut(s) 388, 984, 1150, 1309
HpyAV CCTTC 4 cut(s) 36, 115, 911, 1226
HpyCH4III ACNGT 2 cut(s) 207, 1237
HpyCH4IV ACGT 2 cut(s) 132, 1053
HpyCH4V TGCA 9 cut(s) 80, 161, 234, 533, 566, 773, 815, 929, 1244
HpyF10VI GCNNNNNNNGC 4 cut(s) 563, 770, 1006, 1250
HpyF3I CTNAG 4 cut(s) 375, 708, 790, 1015
HpySE526I ACGT 2 cut(s) 132, 1053
Hsp92II CATG 8 cut(s) 259, 487, 515, 706, 777, 968, 1136, 1348
HspAI GCGC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 5 cut(s) 64, 271, 406, 412, 731
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 3 cut(s) 145, 517, 544
LweI GCATC 2 cut(s) 67, 542
MaeI CTAG 1 cut(s) 1059
MaeII ACGT 2 cut(s) 132, 1053
MaeIII GTNAC 3 cut(s) 328, 522, 1054
MalI GATC 5 cut(s) 66, 273, 408, 414, 733
MboI GATC 5 cut(s) 64, 271, 406, 412, 731
MboII GAAGA 5 cut(s) 857, 961, 1200, 1279, 1379
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 1322
MlsI TGGCCA 1 cut(s) 1392
MluCI AATT 3 cut(s) 399, 465, 1225
MluNI TGGCCA 1 cut(s) 1392
MlyI GAGTC 3 cut(s) 363, 622, 782
MmeI TCCRAC 1 cut(s) 220
Mox20I TGGCCA 1 cut(s) 1392
MroXI GAANNNNTTC 1 cut(s) 805
MscI TGGCCA 1 cut(s) 1392
MseI TTAA 4 cut(s) 44, 195, 623, 1073
MslI CAYNNNNRTG 2 cut(s) 146, 260
Msp20I TGGCCA 1 cut(s) 1392
MspCI CTTAAG 2 cut(s) 43, 1072
MspR9I CCNGG 3 cut(s) 457, 683, 1192
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 3 cut(s) 457, 683, 1192
MwoI GCNNNNNNNGC 4 cut(s) 563, 770, 1006, 1250
NdeII GATC 5 cut(s) 64, 271, 406, 412, 731
NlaIII CATG 8 cut(s) 259, 487, 515, 706, 777, 968, 1136, 1348
NlaIV GGNNCC 1 cut(s) 1001
NmuCI GTSAC 3 cut(s) 328, 522, 1054
PagI TCATGA 1 cut(s) 255
PdmI GAANNNNTTC 1 cut(s) 805
PfeI GAWTC 2 cut(s) 248, 1177
PkrI GCNGC 4 cut(s) 160, 532, 559, 1271
PleI GAGTC 3 cut(s) 362, 622, 782
PpsI GAGTC 3 cut(s) 362, 622, 782
PpuMI RGGWCCY 1 cut(s) 199
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 1322
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 3 cut(s) 455, 681, 1190
PspGI CCWGG 3 cut(s) 455, 681, 1190
PspN4I GGNNCC 1 cut(s) 1001
PspPI GGNCC 3 cut(s) 199, 748, 999
PspPPI RGGWCCY 1 cut(s) 199
PsrI GAACNNNNNNTAC 2 cut(s) 1019, 1051
PstI CTGCAG 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 935
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 6 cut(s) 58, 154, 546, 933, 1037, 1189
RsaNI GTAC 6 cut(s) 57, 153, 545, 932, 1036, 1188
RseI CAYNNNNRTG 2 cut(s) 146, 260
SacI GAGCTC 1 cut(s) 1322
SaqAI TTAA 4 cut(s) 44, 195, 623, 1073
SatI GCNGC 4 cut(s) 159, 531, 558, 1270
Sau3AI GATC 5 cut(s) 64, 271, 406, 412, 731
Sau96I GGNCC 3 cut(s) 199, 748, 999
ScaI AGTACT 2 cut(s) 154, 546
SchI GAGTC 3 cut(s) 363, 622, 782
ScrFI CCNGG 3 cut(s) 457, 683, 1192
SduI GDGCHC 1 cut(s) 1322
SfaNI GCATC 2 cut(s) 67, 542
SfcI CTRYAG 1 cut(s) 927
SinI GGWCC 2 cut(s) 199, 748
SmiMI CAYNNNNRTG 2 cut(s) 146, 260
SmlI CTYRAG 2 cut(s) 43, 1072
SmoI CTYRAG 2 cut(s) 43, 1072
Sse9I AATT 3 cut(s) 399, 465, 1225
SsiI CCGC 2 cut(s) 1267, 1270
SspMI CTAG 1 cut(s) 1059
SstI GAGCTC 1 cut(s) 1322
StyD4I CCNGG 3 cut(s) 455, 681, 1190
StyI CCWWGG 1 cut(s) 1254
TaaI ACNGT 2 cut(s) 207, 1237
TaiI ACGT 2 cut(s) 135, 1056
TaqI TCGA 5 cut(s) 69, 742, 754, 868, 1322
TasI AATT 3 cut(s) 399, 465, 1225
TatI WGTACW 3 cut(s) 152, 544, 1035
TauI GCSGC 1 cut(s) 1272
TfiI GAWTC 2 cut(s) 248, 1177
Tru1I TTAA 4 cut(s) 44, 195, 623, 1073
Tru9I TTAA 4 cut(s) 44, 195, 623, 1073
TscAI CASTG 1 cut(s) 1255
TseFI GTSAC 3 cut(s) 328, 522, 1054
TseI GCWGC 3 cut(s) 158, 530, 557
Tsp45I GTSAC 3 cut(s) 328, 522, 1054
TspDTI ATGAA 1 cut(s) 214
TspGWI ACGGA 2 cut(s) 1153, 1280
TspRI CASTG 1 cut(s) 1255
Vha464I CTTAAG 2 cut(s) 43, 1072
VpaK11BI GGWCC 2 cut(s) 199, 748
XapI RAATTY 1 cut(s) 399
XcmI CCANNNNNNNNNTGG 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 805
XspI CTAG 1 cut(s) 1059
ZrmI AGTACT 2 cut(s) 154, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.