pycom17g10690

Exosome complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004112
Physical Location & Seq
Reverse (-)
8265387 .. 8266993
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGGGGGCTACGGATGTCATTGCTAGTGTGAAGGCTGAACTTGGAAGGCCTACTGCACTGCAACCTGACAAAGGAAAGGTCTTTATAAATGTCGATTGCAGTCCAACTGCAGCACCAATGTTTGAGGGTAGAGGAGGTGAGGAGCTGTCAGCAGAACTCTCGGTGGCTCTTCGACATTGCCTCTTGGGTGGTAAAAGTGGATCTGGTGCTGGAATTGAAGTCTCCTCTCTGGTAGTTGTGGAAGGAAAGATCTGTTGGGATCTTTACGTTGACGGCCTTGTTGTCAGTTCAGATGGGAATCTTCTAGATGCCCTAGGTGCTGCTATAAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGGGATGAGCAACCGGAGGTTGATGTAAGCGACGAGGAGTTTCTGCAATTTGACACATCTAAGGTTCCTGTCATAGTTACATTAACAAAGGTAGGTAAGCACTACATTGTGGATGCCACTTCAGAAGAGGAATCACAAATGAGCTCGGCTGTTTCAATTTCTGTCAATAGGCAAGGGCACATCTGCGGGTTGACCAAACGGGGTGGTGCAGGCCTACTCAATGGGATCGATCCAAGCATCATTCTCGACATGGTATCTGTGGCAAAAACAGTTAGTGAGCAGCTGATAAACACGTTGGATTCTCAGATAGCTGCTGCTGAAGCTGGTGAAGATGAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000176 GO:0000177 GO:0000178 GO:0000288 GO:0000291 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016075 GO:0016078 GO:0016180 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017091 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031323 GO:0031329 GO:0031974 GO:0031981 GO:0032991 GO:0034427 GO:0034470 GO:0034472 GO:0034473 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043487 GO:0043488 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0043928 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071035 GO:0071038 GO:0071042 GO:0071046 GO:0071047 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1903311 GO:1905354
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
RNase_PH RNase_PH_C

Protein Analysis

242

Amino Acids

24.77

Weight (kDa)

4.43

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_PH PF01138 1 - 119 3.4e-14 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 150 - 217 2e-11 3' exoribonuclease family, domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 86
AciI CCGC 1 cut(s) 570
AclWI GGATC 4 cut(s) 208, 267, 608, 617
AcuI CTGAAG 2 cut(s) 489, 723
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 2 cut(s) 218, 540
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 6 cut(s) 145, 374, 528, 667, 695, 707
AluI AGCT 6 cut(s) 145, 374, 528, 667, 695, 707
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 4 cut(s) 208, 267, 608, 617
AoxI GGCC 3 cut(s) 47, 274, 595
ApeKI GCWGC 7 cut(s) 110, 320, 332, 371, 664, 695, 698
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AspA2I CCTAGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 149, 722
AvrII CCTAGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 564
BanII GRGCYC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 7 cut(s) 122, 307, 319, 383, 676, 682, 685
BccI CCATC 1 cut(s) 287
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 4 cut(s) 141, 175, 610, 644
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 3 cut(s) 24, 305, 314
BfmI CTRYAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 249
BisI GCNGC 7 cut(s) 111, 321, 333, 372, 665, 696, 699
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 7 cut(s) 112, 322, 334, 373, 666, 697, 700
BmiI GGNNCC 1 cut(s) 450
BmsI GCATC 5 cut(s) 298, 360, 389, 487, 630
Bsa29I ATCGAT 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse3DI GCAATG 2 cut(s) 18, 175
Bse8I GATNNNNATC 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 4 cut(s) 19, 351, 394, 502
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 2 cut(s) 18, 175
BseMII CTCAG 1 cut(s) 701
BseRI GAGGAG 4 cut(s) 147, 155, 214, 434
BseSI GKGCMC 1 cut(s) 564
BseXI GCAGC 7 cut(s) 122, 307, 319, 383, 676, 682, 685
BsgI GTGCAG 2 cut(s) 39, 612
BshFI GGCC 3 cut(s) 49, 276, 597
BshVI ATCGAT 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 226
BsnI GGCC 3 cut(s) 49, 276, 597
Bsp1286I GDGCHC 2 cut(s) 530, 564
Bsp143I GATC 5 cut(s) 200, 249, 259, 609, 613
BspACI CCGC 1 cut(s) 570
BspANI GGCC 3 cut(s) 49, 276, 597
BspCNI CTCAG 1 cut(s) 700
BspDI ATCGAT 1 cut(s) 612
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 112
BspPI GGATC 4 cut(s) 208, 267, 608, 617
BspQI GCTCTTC 1 cut(s) 174
BsrDI GCAATG 2 cut(s) 18, 175
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 5 cut(s) 200, 249, 259, 609, 613
BssT1I CCWWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 174, 504
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 595
BstDEI CTNAG 2 cut(s) 444, 687
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 4 cut(s) 19, 351, 394, 502
BstKTI GATC 5 cut(s) 203, 252, 262, 612, 616
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 5 cut(s) 200, 249, 259, 609, 613
BstMWI GCNNNNNNNGC 5 cut(s) 317, 329, 348, 377, 704
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 564
BstV1I GCAGC 7 cut(s) 122, 307, 319, 383, 676, 682, 685
BstX2I RGATCY 3 cut(s) 200, 249, 259
BstYI RGATCY 3 cut(s) 200, 249, 259
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 3 cut(s) 49, 276, 597
BsuTUI ATCGAT 1 cut(s) 612
BtsCI GGATG 4 cut(s) 19, 351, 394, 502
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 595
ClaI ATCGAT 1 cut(s) 612
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 1 cut(s) 634
DdeI CTNAG 2 cut(s) 444, 687
DpnI GATC 5 cut(s) 202, 251, 261, 611, 615
DpnII GATC 5 cut(s) 200, 249, 259, 609, 613
Eam1104I CTCTTC 2 cut(s) 174, 504
EarI CTCTTC 2 cut(s) 174, 504
Ecl136II GAGCTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 313
Eco147I AGGCCT 2 cut(s) 49, 597
Eco24I GRGCYC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 528
Eco57I CTGAAG 2 cut(s) 489, 723
EcoICRI GAGCTC 1 cut(s) 528
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 637
FaiI YATR 4 cut(s) 86, 326, 458, 635
FatI CATG 1 cut(s) 633
FauI CCCGC 1 cut(s) 563
Fnu4HI GCNGC 7 cut(s) 111, 321, 333, 372, 665, 696, 699
FokI GGATG 4 cut(s) 26, 338, 401, 509
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 7 cut(s) 111, 321, 333, 372, 665, 696, 699
FspBI CTAG 3 cut(s) 24, 305, 314
GluI GCNGC 7 cut(s) 111, 321, 333, 372, 665, 696, 699
HaeIII GGCC 3 cut(s) 49, 276, 597
HapII CCGG 1 cut(s) 398
Hin1II CATG 1 cut(s) 637
HincII GTYRAC 2 cut(s) 271, 576
HindII GTYRAC 2 cut(s) 271, 576
HinfI GANTC 4 cut(s) 298, 515, 683, 719
HpaII CCGG 1 cut(s) 398
HphI GGTGA 2 cut(s) 149, 722
Hpy166II GTNNAC 2 cut(s) 271, 576
Hpy188I TCNGA 3 cut(s) 292, 508, 690
Hpy188III TCNNGA 2 cut(s) 305, 629
Hpy8I GTNNAC 2 cut(s) 271, 576
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 25, 39, 236
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 267, 677
HpyCH4V TGCA 8 cut(s) 56, 61, 99, 110, 371, 380, 430, 593
HpyF10VI GCNNNNNNNGC 5 cut(s) 317, 329, 348, 377, 704
HpyF3I CTNAG 2 cut(s) 444, 687
HpySE526I ACGT 2 cut(s) 267, 677
Hsp92II CATG 1 cut(s) 637
Kzo9I GATC 5 cut(s) 200, 249, 259, 609, 613
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 142
Lsp1109I GCAGC 7 cut(s) 122, 307, 319, 383, 676, 682, 685
LweI GCATC 5 cut(s) 298, 360, 389, 487, 630
MaeI CTAG 3 cut(s) 24, 305, 314
MaeII ACGT 2 cut(s) 267, 677
MaeIII GTNAC 1 cut(s) 460
MalI GATC 5 cut(s) 202, 251, 261, 611, 615
MboI GATC 5 cut(s) 200, 249, 259, 609, 613
MboII GAAGA 4 cut(s) 161, 293, 521, 725
MflI RGATCY 3 cut(s) 200, 249, 259
MhlI GDGCHC 2 cut(s) 530, 564
MluCI AATT 3 cut(s) 213, 431, 540
MmeI TCCRAC 2 cut(s) 128, 660
MnlI CCTC 9 cut(s) 118, 125, 128, 133, 191, 235, 394, 412, 505
MseI TTAA 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 374, 667
MspI CCGG 1 cut(s) 398
MwoI GCNNNNNNNGC 5 cut(s) 317, 329, 348, 377, 704
NdeII GATC 5 cut(s) 200, 249, 259, 609, 613
NlaIII CATG 1 cut(s) 637
NlaIV GGNNCC 1 cut(s) 450
NmeAIII GCCGAG 1 cut(s) 509
PceI AGGCCT 2 cut(s) 49, 597
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 4 cut(s) 298, 515, 683, 719
PkrI GCNGC 7 cut(s) 112, 322, 334, 373, 666, 697, 700
PsiI TTATAA 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 450
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 3 cut(s) 200, 249, 259
PvuII CAGCTG 2 cut(s) 374, 667
SacI GAGCTC 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 7 cut(s) 111, 321, 333, 372, 665, 696, 699
Sau3AI GATC 5 cut(s) 200, 249, 259, 609, 613
SduI GDGCHC 2 cut(s) 530, 564
SfaNI GCATC 5 cut(s) 298, 360, 389, 487, 630
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 213, 431, 540
SseBI AGGCCT 2 cut(s) 49, 597
SsiI CCGC 1 cut(s) 570
SspMI CTAG 3 cut(s) 24, 305, 314
SstI GAGCTC 1 cut(s) 530
StuI AGGCCT 2 cut(s) 49, 597
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 270, 680
TaqI TCGA 4 cut(s) 93, 172, 612, 630
TasI AATT 3 cut(s) 213, 431, 540
TfiI GAWTC 4 cut(s) 298, 515, 683, 719
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 1 cut(s) 63
TseI GCWGC 7 cut(s) 110, 320, 332, 371, 664, 695, 698
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 304
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 3 cut(s) 24, 305, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.