pycom17g12250

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012900
Physical Location & Seq
Forward (+)
9968387 .. 9971157
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 867 bp
ATGATTAAATTAAGCAGAAATTTCAGTTCGATTTTTTTGAGTGTTTTGGATTTCAAGATGTATCGCTTGAGATTGAGCATCATACCAATTTTCTACATGTCCATTACAATCACTACTTTCTCCATTCTATGTGATGCAAGAAGTTTTGCGCAATTCTTTAAACCCCAAGATACAAAACTACACAAAAGCAAATCAATCCATGAATTAGACAAGAACAAGCTGAAAGCAATAAATCACTTGGACTTACATTTTGCGTTGGCTTCCCCAAATATTGAATTCCAACCGTTCGATGCCAGCTCTCCCTTCTCATCGCCACCGTTGGATTCACCAGCACCGGGACATCTCCCCCTTCCGGCTCCAAACTCCGTATCCCCACCAATTCCTCCAAACCCATCTCTAGCAAATCCTCCTCCATCTGGGCCCACTTCCTCACCCATCCCAAACCCACCACAAAATGGGCCTAGCCCACACCCACCAACCACAATCCCAACCCCACCCAAATCAGTCCTGAGCCCACCAGTCTTTCCGCCGCCAATAGCTTTCCCTCCACCGTCCGGAACGCCATCCCCTCCGCAGAAAAAGCCACCGCAGTTTGCCGTGTGGTGCGTGGTGAAGCCTACAGTGCCGGACGCGATAATCCAAGAAGCCCTGGACTATGCGTGTGGGTCCGGGGCAGACTGCAAGTCAATCCGTCCCAATGGGTCCTGCTACCAGCCCAACACATTGTTGTCGCATGCTTCGTATGCCTTCAATAGTTACTGGCAGAACACGAAGATCGCTGGAGGCACTTGTGACTTTGGAGGGACTGCCATGCTTGTCACAGTTGATCCAAGTTATGATGAATGCAATTTCTTCTTCAACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

289

Amino Acids

31.15

Weight (kDa)

8.43

Isoelectric Point (pI)

66.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 201 - 271 1.5e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012900)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04910 AT2G04910
malus_domestica MD09G1143600.v1.1 MD17G1129900.v1.1
prunus_persica Prupe.3G184100_v2.0.a1
pyrus_communis pycom09g06310 pycom17g12250 pycom17g12270
rosa_chinensis RchiOBHm_Chr2g0153201
rosa_laevigata RLG00000020685
rosa_multiflora Rmu_sc0000442.1_g000001
rosa_roxburghii Rroxscaffold_2G00095100
rosa_rugosa Rorug02G0437500
rosa_samantha Rh2AG500400 Rh2BG511800 Rh2CG486600 Rh2DG523800
rosa_wichuraiana Rw2G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 632
AccIII TCCGGA 1 cut(s) 554
AciI CCGC 4 cut(s) 527, 530, 572, 587
AclWI GGATC 1 cut(s) 821
AcsI RAATTY 2 cut(s) 19, 275
AfiI CCNNNNNNNGG 5 cut(s) 335, 352, 416, 455, 554
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 55, 275, 751, 859
AhdI GACNNNNNGTC 1 cut(s) 682
AjnI CCWGG 1 cut(s) 648
AluBI AGCT 3 cut(s) 220, 297, 539
AluI AGCT 3 cut(s) 220, 297, 539
AlwI GGATC 1 cut(s) 821
Aor13HI TCCGGA 1 cut(s) 554
AoxI GGCC 2 cut(s) 419, 458
ApaI GGGCCC 1 cut(s) 423
ApoI RAATTY 2 cut(s) 19, 275
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 5 cut(s) 419, 420, 458, 666, 702
AsuC2I CCSGG 2 cut(s) 336, 670
AsuHPI GGTGA 3 cut(s) 318, 423, 622
AvaII GGWCC 2 cut(s) 666, 702
BaeGI GKGCMC 1 cut(s) 423
BanII GRGCYC 2 cut(s) 423, 515
BccI CCATC 4 cut(s) 400, 421, 443, 571
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 650
BciVI GTATCC 1 cut(s) 379
BcnI CCSGG 2 cut(s) 336, 670
BfaI CTAG 2 cut(s) 398, 462
BfmI CTRYAG 1 cut(s) 618
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 1 cut(s) 530
BlsI GCNGC 1 cut(s) 531
Bme1390I CCNGG 3 cut(s) 336, 650, 670
Bme18I GGWCC 2 cut(s) 666, 702
BmeRI GACNNNNNGTC 1 cut(s) 682
BmgT120I GGNCC 5 cut(s) 419, 420, 458, 666, 702
BmiI GGNNCC 4 cut(s) 357, 421, 667, 703
BmrFI CCNGG 3 cut(s) 336, 650, 670
BmsI GCATC 3 cut(s) 87, 124, 280
BpmI CTGGAG 1 cut(s) 801
Bpu10I CCTNAGC 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 2 cut(s) 336, 670
BsaJI CCNNGG 2 cut(s) 648, 669
BsaWI WCCGGW 1 cut(s) 554
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 352, 416, 455, 554
Bse1I ACTGG 2 cut(s) 518, 764
BseAI TCCGGA 1 cut(s) 554
BseBI CCWGG 1 cut(s) 650
BseDI CCNNGG 2 cut(s) 648, 669
BseGI GGATG 2 cut(s) 435, 563
BseLI CCNNNNNNNGG 5 cut(s) 335, 352, 416, 455, 554
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 518, 764
BseRI GAGGAG 1 cut(s) 399
BseSI GKGCMC 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 632
BshFI GGCC 2 cut(s) 421, 460
BsiSI CCGG 5 cut(s) 335, 353, 555, 626, 669
BslFI GGGAC 3 cut(s) 351, 678, 817
BslI CCNNNNNNNGG 5 cut(s) 335, 352, 416, 455, 554
BsmFI GGGAC 3 cut(s) 351, 678, 817
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 2 cut(s) 421, 460
Bsp120I GGGCCC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 423, 515
Bsp13I TCCGGA 1 cut(s) 554
Bsp143I GATC 2 cut(s) 774, 826
BspACI CCGC 4 cut(s) 527, 530, 572, 587
BspANI GGCC 2 cut(s) 421, 460
BspCNI CTCAG 1 cut(s) 501
BspEI TCCGGA 1 cut(s) 554
BspFNI CGCG 1 cut(s) 632
BspLI GGNNCC 4 cut(s) 357, 421, 667, 703
BspPI GGATC 1 cut(s) 821
BsrI ACTGG 2 cut(s) 518, 764
BssECI CCNNGG 2 cut(s) 648, 669
BssMI GATC 2 cut(s) 774, 826
Bst2UI CCWGG 1 cut(s) 650
Bst4CI ACNGT 5 cut(s) 285, 318, 552, 622, 823
BstC8I GCNNGC 2 cut(s) 295, 735
BstDEI CTNAG 1 cut(s) 509
BstF5I GGATG 2 cut(s) 435, 563
BstFNI CGCG 1 cut(s) 632
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 777, 829
BstMBI GATC 2 cut(s) 774, 826
BstMWI GCNNNNNNNGC 3 cut(s) 580, 622, 743
BstNI CCWGG 1 cut(s) 650
BstNSI RCATGY 2 cut(s) 100, 737
BstSCI CCNGG 3 cut(s) 334, 648, 668
BstSFI CTRYAG 1 cut(s) 618
BstSLI GKGCMC 1 cut(s) 423
BstUI CGCG 1 cut(s) 632
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 421, 460
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 435, 563
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 2 cut(s) 295, 735
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 5 cut(s) 419, 420, 458, 666, 702
CseI GACGC 1 cut(s) 638
CviAII CATG 4 cut(s) 97, 200, 734, 811
DdeI CTNAG 1 cut(s) 509
DpnI GATC 2 cut(s) 776, 828
DpnII GATC 2 cut(s) 774, 826
DraI TTTAAA 1 cut(s) 160
DriI GACNNNNNGTC 1 cut(s) 682
Eam1105I GACNNNNNGTC 1 cut(s) 682
EciI GGCGGA 1 cut(s) 516
Eco24I GRGCYC 2 cut(s) 423, 515
Eco47I GGWCC 2 cut(s) 666, 702
EcoO109I RGGNCCY 1 cut(s) 702
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 648
EcoT38I GRGCYC 2 cut(s) 423, 515
FaeI CATG 4 cut(s) 100, 203, 737, 814
FaiI YATR 9 cut(s) 83, 98, 130, 201, 657, 735, 744, 812, 837
FaqI GGGAC 3 cut(s) 351, 678, 817
FatI CATG 4 cut(s) 96, 199, 733, 810
Fnu4HI GCNGC 1 cut(s) 530
FokI GGATG 2 cut(s) 422, 550
FriOI GRGCYC 2 cut(s) 423, 515
Fsp4HI GCNGC 1 cut(s) 530
FspBI CTAG 2 cut(s) 398, 462
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 530
GsuI CTGGAG 1 cut(s) 801
HaeIII GGCC 2 cut(s) 421, 460
HapII CCGG 5 cut(s) 335, 353, 555, 626, 669
HgaI GACGC 1 cut(s) 638
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 100, 203, 737, 814
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 323
HpaII CCGG 5 cut(s) 335, 353, 555, 626, 669
HphI GGTGA 3 cut(s) 318, 423, 622
Hpy188III TCNNGA 3 cut(s) 55, 508, 555
HpyAV CCTTC 3 cut(s) 313, 359, 757
HpyCH4III ACNGT 5 cut(s) 285, 318, 552, 622, 823
HpyCH4V TGCA 3 cut(s) 137, 681, 846
HpyF10VI GCNNNNNNNGC 3 cut(s) 580, 622, 743
HpyF3I CTNAG 1 cut(s) 509
Hsp92II CATG 4 cut(s) 100, 203, 737, 814
HspAI GCGC 1 cut(s) 149
Kpn2I TCCGGA 1 cut(s) 554
Kzo9I GATC 2 cut(s) 774, 826
LmnI GCTCC 1 cut(s) 361
LweI GCATC 3 cut(s) 87, 124, 280
MaeI CTAG 2 cut(s) 398, 462
MaeIII GTNAC 3 cut(s) 755, 791, 817
MalI GATC 2 cut(s) 776, 828
MboI GATC 2 cut(s) 774, 826
MboII GAAGA 3 cut(s) 784, 844, 847
MhlI GDGCHC 2 cut(s) 423, 515
MluCI AATT 8 cut(s) 8, 19, 87, 152, 203, 275, 378, 847
MmeI TCCRAC 2 cut(s) 300, 304
MnlI CCTC 8 cut(s) 393, 417, 420, 439, 555, 579, 776, 794
MroI TCCGGA 1 cut(s) 554
MseI TTAA 3 cut(s) 6, 11, 159
MspI CCGG 5 cut(s) 335, 353, 555, 626, 669
MspR9I CCNGG 3 cut(s) 336, 650, 670
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 1 cut(s) 650
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 3 cut(s) 580, 622, 743
NciI CCSGG 2 cut(s) 336, 670
NdeII GATC 2 cut(s) 774, 826
NlaIII CATG 4 cut(s) 100, 203, 737, 814
NlaIV GGNNCC 4 cut(s) 357, 421, 667, 703
NmuCI GTSAC 2 cut(s) 791, 817
NsbI TGCGCA 1 cut(s) 150
NspI RCATGY 2 cut(s) 100, 737
PaeI GCATGC 1 cut(s) 737
PciI ACATGT 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 737
PctI GAATGC 1 cut(s) 848
PfeI GAWTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 1 cut(s) 531
PpuMI RGGWCCY 1 cut(s) 702
PscI ACATGT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 648
PspGI CCWGG 1 cut(s) 648
PspN4I GGNNCC 4 cut(s) 357, 421, 667, 703
PspOMI GGGCCC 1 cut(s) 419
PspPI GGNCC 5 cut(s) 419, 420, 458, 666, 702
PspPPI RGGWCCY 1 cut(s) 702
SaqAI TTAA 3 cut(s) 6, 11, 159
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 2 cut(s) 774, 826
Sau96I GGNCC 5 cut(s) 419, 420, 458, 666, 702
ScrFI CCNGG 3 cut(s) 336, 650, 670
SduI GDGCHC 2 cut(s) 423, 515
SetI ASST 3 cut(s) 222, 299, 541
SfaNI GCATC 3 cut(s) 87, 124, 280
SfcI CTRYAG 1 cut(s) 618
SinI GGWCC 2 cut(s) 666, 702
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SphI GCATGC 1 cut(s) 737
Sse9I AATT 8 cut(s) 8, 19, 87, 152, 203, 275, 378, 847
SsiI CCGC 4 cut(s) 527, 530, 572, 587
SspI AATATT 1 cut(s) 271
SspMI CTAG 2 cut(s) 398, 462
StyD4I CCNGG 3 cut(s) 334, 648, 668
TaaI ACNGT 5 cut(s) 285, 318, 552, 622, 823
TaqI TCGA 2 cut(s) 29, 288
TasI AATT 8 cut(s) 8, 19, 87, 152, 203, 275, 378, 847
TauI GCSGC 1 cut(s) 532
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 6, 11, 159
Tru9I TTAA 3 cut(s) 6, 11, 159
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 2 cut(s) 791, 817
Tsp45I GTSAC 2 cut(s) 791, 817
TspDTI ATGAA 2 cut(s) 216, 855
TspGWI ACGGA 2 cut(s) 355, 680
TspRI CASTG 1 cut(s) 627
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 666, 702
XapI RAATTY 2 cut(s) 19, 275
XceI RCATGY 2 cut(s) 100, 737
XspI CTAG 2 cut(s) 398, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.