Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000969

Physical Location & Seq

Genomic Coordinates Reverse (-)

11399110 .. 11400231

Gene Structure 1122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCTGTTTAATTGCGCGCAGGATAGGGCTGTGAATTACTTATTTACGCATATCGATAGGATTATTGATTGGGGGGAACAGTTACAGATGGTTGTGTTGGAATTGATTAAGAAGGTCTGTAGGGTTAATAAAGGTGAGAAAGGGAAGTACATTAAGGTTATAATCTCGTTGCTTAATGCCCCGTCTAGTGCCGTTGTTTATGAGTGTGCCGGAACCCTTGTGTCTCTGTCCTCGGCACCTACTGCAATTCGGGCAGCTGCCAATACGTATTGTCAGTTGTTGTTGTCGCAGAGTGATAACAATGTGAAGTTGATTGTGCTAGATAGGGTTAGCGAGCTTAAGGCTTCACACAGGGAGATTATGGTTGAGTTGGTTATGGATGTTCTAAGGGCACTGTCAAGTCCAAATGTTGATATTAGGAGGAAGACTCTTGACATTGTGCTTGATTTGATTACCCCCGCGAATGTTGATGAGGTTGTGATGATGTTGAAGAAGGAGGTCGTGAAGACTCAGGGTGGGGAACTTGAGAAGAATGGGGAGTATAGGCAGATGTTGGTGCAAGCGATTTACGCGTGTGCTGTTAAGTTTCCTGAGGTGGCGAGCACAGTTGTGCATCCTTTGATGGATTTCTTGGGCGATTCTAATGTGGCTTCAGCACTGGACGTGGCAGTTTTTGTGCGTGAGATAATTGAAACCAACCCCAAGCTGCGTGTTTCTATAATAACGAGGCTGCTGGATACTTTCTACCAGATCCGCAATTCCAGGGTGTGTACTCATGCTCTATGGATTATCGGCGAGTATGCTCTCTCGCTTTCGGAGGTTGAGAGTGGGATTGCAACCATTAAGCAGTGTCTTGGGGAGCTTCCATTCTACACTGCTTCTGAGGAAAAGGAAGCACAAGATGCTTCAAAGAACTCTCAGGTGGTAAGCTCGAGCACCGTGTCTTCTAGGAGGCCTGTGATCCTTGCAGACGGGACCTATGCGACCCAATCTGCTGCACTGGAAACTGCTATGTCTGCACCTGTCCTTTTTCAAGGATCTCTGACTTCTGTGGGGAACTTGATCGATCATTGGTTCTCTCGGGTGATTTTTTCCTTGATTCAGTCATGGCTTGCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Adaptin_N Coatamer_beta_C Coatomer_b_Cpla

Protein Analysis

374

Amino Acids

41.23

Weight (kDa)

5.94

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adaptin_N	PF01602	9 - 330	5.5e-54	Adaptin N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31480 AT4G31490 AT4G31490 AT4G31490
fragaria_vesca	FvH4_4g12700 FvH4_4g12700 FvH4_4g12700 FvH4_6g37230 FvH4_6g37230 FvH4_6g37230
malus_domestica	MD04G1023700.v1.1 MD09G1159400.v1.1 MD13G1280100.v1.1 MD17G1145600.v1.1
prunus_persica	Prupe.3G018300_v2.0.a1 Prupe.3G018400_v2.0.a1
pyrus_communis	pycom04g02030 pycom09g07780 pycom09g18330 pycom13g29300 pycom15g32330 pycom15g32340 pycom17g13850
rosa_chinensis	RchiOBHm_Chr2g0149941 RchiOBHm_Chr2g0149961 RchiOBHm_Chr2g0149991 RchiOBHm_Chr4g0411591
rosa_laevigata	RLG00000008343 RLG00000020457 RLG00000020458
rosa_multiflora	Rmu_sc0001899.1_g000002 Rmu_sc0006550.1_g000008
rosa_roxburghii	Rroxscaffold_2G00097530 Rroxscaffold_2G00097540 Rroxscaffold_5G00356170
rosa_rugosa	Rorug02G0417300 Rorug04G0107800
rosa_samantha	Rh2AG476800 Rh2AG476900 Rh2AG477100 Rh2BG488500 Rh2BG488600 Rh2CG462500 Rh2CG462600 Rh2CG462800 Rh2DG497600 Rh2DG497700 Rh4AG169200 Rh4BG166100 Rh4CG180900 Rh4DG163500
rosa_wichuraiana	Rw2G038870 Rw2G038880 Rw2G038900 Rw4G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	235
AccII	CGCG	3 cut(s)	17, 461, 572
AciI	CCGC	2 cut(s)	459, 754
AclWI	GGATC	3 cut(s)	745, 955, 1045
AcuI	CTGAAG	1 cut(s)	636
AfaI	GTAC	2 cut(s)	149, 772
AflII	CTTAAG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	4 cut(s)	490, 692, 909, 1034
AjiI	CACGTC	1 cut(s)	664
AjnI	CCWGG	1 cut(s)	761
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	5 cut(s)	257, 337, 706, 862, 930
AluI	AGCT	5 cut(s)	257, 337, 706, 862, 930
Alw21I	GWGCWC	2 cut(s)	605, 938
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	3 cut(s)	745, 955, 1045
Ama87I	CYCGRG	2 cut(s)	931, 1080
AoxI	GGCC	1 cut(s)	953
ApeKI	GCWGC	5 cut(s)	254, 257, 706, 730, 995
AspLEI	GCGC	2 cut(s)	17, 19
AspS9I	GGNCC	1 cut(s)	975
AsuHPI	GGTGA	2 cut(s)	146, 1096
AvaI	CYCGRG	2 cut(s)	931, 1080
AvaII	GGWCC	1 cut(s)	975
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	3 cut(s)	431, 512, 936
Bbv12I	GWGCWC	2 cut(s)	605, 938
BbvI	GCAGC	5 cut(s)	244, 266, 693, 717, 982
BccI	CCATC	2 cut(s)	82, 616
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	763
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	3 cut(s)	186, 320, 948
BfmI	CTRYAG	1 cut(s)	118
BfrI	CTTAAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	5 cut(s)	255, 258, 707, 731, 996
BlsI	GCNGC	5 cut(s)	256, 259, 708, 732, 997
Bme1390I	CCNGG	1 cut(s)	763
Bme18I	GGWCC	1 cut(s)	975
BmeT110I	CYCGRG	2 cut(s)	931, 1080
BmgBI	CACGTC	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	975
BmiI	GGNNCC	3 cut(s)	214, 237, 976
BmrFI	CCNGG	1 cut(s)	763
BmsI	GCATC	2 cut(s)	622, 892
BpiI	GAAGAC	3 cut(s)	431, 512, 936
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpuEI	CTTGAG	1 cut(s)	545
Bsa29I	ATCGAT	2 cut(s)	54, 1065
BsaAI	YACGTR	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	231, 762
Bse1I	ACTGG	2 cut(s)	663, 1005
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	763
BseCI	ATCGAT	2 cut(s)	54, 1065
BseDI	CCNNGG	2 cut(s)	231, 762
BseGI	GGATG	2 cut(s)	385, 613
BseMII	CTCAG	4 cut(s)	524, 582, 873, 932
BseNI	ACTGG	2 cut(s)	663, 1005
BsePI	GCGCGC	1 cut(s)	15
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	5 cut(s)	244, 266, 693, 717, 982
BsgI	GTGCAG	2 cut(s)	981, 1002
Bsh1236I	CGCG	3 cut(s)	17, 461, 572
BshFI	GGCC	1 cut(s)	955
BshNI	GGYRCC	1 cut(s)	235
BshVI	ATCGAT	2 cut(s)	54, 1065
BsiHKAI	GWGCWC	2 cut(s)	605, 938
BsiHKCI	CYCGRG	2 cut(s)	931, 1080
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	988
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	988
BsnI	GGCC	1 cut(s)	955
BsoBI	CYCGRG	2 cut(s)	931, 1080
Bsp1286I	GDGCHC	3 cut(s)	394, 605, 938
Bsp143I	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
BspACI	CCGC	2 cut(s)	459, 754
BspANI	GGCC	1 cut(s)	955
BspCNI	CTCAG	4 cut(s)	523, 583, 874, 931
BspDI	ATCGAT	2 cut(s)	54, 1065
BspFNI	CGCG	3 cut(s)	17, 461, 572
BspLI	GGNNCC	3 cut(s)	214, 237, 976
BspPI	GGATC	3 cut(s)	745, 955, 1045
BspT107I	GGYRCC	1 cut(s)	235
BspTI	CTTAAG	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	663, 1005
BssECI	CCNNGG	2 cut(s)	231, 762
BssHII	GCGCGC	1 cut(s)	15
BssMI	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
Bst2UI	CCWGG	1 cut(s)	763
Bst4CI	ACNGT	4 cut(s)	81, 396, 607, 940
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	2 cut(s)	242, 902
BstBAI	YACGTR	1 cut(s)	267
BstC8I	GCNNGC	5 cut(s)	17, 335, 561, 601, 1113
BstDEI	CTNAG	5 cut(s)	386, 510, 591, 882, 918
BstF5I	GGATG	2 cut(s)	385, 613
BstFNI	CGCG	3 cut(s)	17, 461, 572
BstHHI	GCGC	2 cut(s)	17, 19
BstKTI	GATC	5 cut(s)	753, 963, 1040, 1065, 1069
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 251, 569, 902, 1016
BstNI	CCWGG	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	761
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	394
BstSNI	TACGTA	1 cut(s)	267
BstUI	CGCG	3 cut(s)	17, 461, 572
BstV1I	GCAGC	5 cut(s)	244, 266, 693, 717, 982
BstV2I	GAAGAC	3 cut(s)	431, 512, 936
BstX2I	RGATCY	2 cut(s)	750, 1037
BstYI	RGATCY	2 cut(s)	750, 1037
Bsu15I	ATCGAT	2 cut(s)	54, 1065
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	1 cut(s)	955
BsuTUI	ATCGAT	2 cut(s)	54, 1065
BtrI	CACGTC	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	385, 613
BtsI	GCAGTG	2 cut(s)	854, 873
BtsIMutI	CAGTG	5 cut(s)	392, 656, 854, 873, 998
Cac8I	GCNNGC	5 cut(s)	17, 335, 561, 601, 1113
CfoI	GCGC	2 cut(s)	17, 19
Cfr13I	GGNCC	1 cut(s)	975
ClaI	ATCGAT	2 cut(s)	54, 1065
Csp6I	GTAC	2 cut(s)	148, 771
CviAII	CATG	2 cut(s)	776, 1107
CviQI	GTAC	2 cut(s)	148, 771
DdeI	CTNAG	5 cut(s)	386, 510, 591, 882, 918
DpnI	GATC	5 cut(s)	752, 962, 1039, 1064, 1068
DpnII	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
Eco105I	TACGTA	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	955
Eco47I	GGWCC	1 cut(s)	975
Eco57I	CTGAAG	1 cut(s)	636
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	2 cut(s)	931, 1080
EcoO109I	RGGNCCY	1 cut(s)	975
EcoRII	CCWGG	1 cut(s)	761
FaeI	CATG	2 cut(s)	779, 1110
FaqI	GGGAC	1 cut(s)	988
FatI	CATG	2 cut(s)	775, 1106
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	255, 258, 707, 731, 996
FokI	GGATG	2 cut(s)	392, 600
Fsp4HI	GCNGC	5 cut(s)	255, 258, 707, 731, 996
FspBI	CTAG	3 cut(s)	186, 320, 948
GlaI	GCGC	2 cut(s)	16, 18
GluI	GCNGC	5 cut(s)	255, 258, 707, 731, 996
HaeIII	GGCC	1 cut(s)	955
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	2 cut(s)	17, 19
Hin1II	CATG	2 cut(s)	779, 1110
Hin6I	GCGC	2 cut(s)	15, 17
HinP1I	GCGC	2 cut(s)	15, 17
HinfI	GANTC	4 cut(s)	427, 508, 638, 1099
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	146, 1096
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	3 cut(s)	817, 883, 1044
Hpy188III	TCNNGA	3 cut(s)	431, 502, 590
Hpy8I	GTNNAC	1 cut(s)	771
HpyAV	CCTTC	2 cut(s)	106, 487
HpyCH4III	ACNGT	4 cut(s)	81, 396, 607, 940
HpyCH4IV	ACGT	2 cut(s)	266, 663
HpyCH4V	TGCA	8 cut(s)	245, 559, 613, 836, 968, 998, 1019, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 251, 569, 902, 1016
HpyF3I	CTNAG	5 cut(s)	386, 510, 591, 882, 918
HpySE526I	ACGT	2 cut(s)	266, 663
Hsp92II	CATG	2 cut(s)	779, 1110
HspAI	GCGC	2 cut(s)	15, 17
Kzo9I	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	5 cut(s)	244, 266, 693, 717, 982
LweI	GCATC	2 cut(s)	622, 892
MaeI	CTAG	3 cut(s)	186, 320, 948
MaeII	ACGT	2 cut(s)	266, 663
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	5 cut(s)	752, 962, 1039, 1064, 1068
MboI	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
MboII	GAAGA	5 cut(s)	436, 502, 517, 541, 936
MflI	RGATCY	2 cut(s)	750, 1037
MhlI	GDGCHC	3 cut(s)	394, 605, 938
MluCI	AATT	6 cut(s)	10, 34, 101, 246, 687, 757
MluI	ACGCGT	1 cut(s)	570
MlyI	GAGTC	2 cut(s)	421, 502
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	241, 414, 466, 490, 586, 720, 811, 877, 945
MseI	TTAA	9 cut(s)	9, 108, 126, 153, 174, 339, 582, 843, 1120
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	763
MvaI	CCWGG	1 cut(s)	763
MvnI	CGCG	3 cut(s)	17, 461, 572
MwoI	GCNNNNNNNGC	5 cut(s)	242, 251, 569, 902, 1016
NdeII	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
NlaIII	CATG	2 cut(s)	779, 1110
NlaIV	GGNNCC	3 cut(s)	214, 237, 976
NmeAIII	GCCGAG	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	608
PaeR7I	CTCGAG	1 cut(s)	931
PauI	GCGCGC	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	955
PfeI	GAWTC	2 cut(s)	638, 1099
PkrI	GCNGC	5 cut(s)	256, 259, 708, 732, 997
PleI	GAGTC	2 cut(s)	421, 502
PpsI	GAGTC	2 cut(s)	421, 502
Ppu21I	YACGTR	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	975
PsiI	TTATAA	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	761
PspN4I	GGNNCC	3 cut(s)	214, 237, 976
PspPI	GGNCC	1 cut(s)	975
PspPPI	RGGWCCY	1 cut(s)	975
PspXI	VCTCGAGB	1 cut(s)	931
PsuI	RGATCY	2 cut(s)	750, 1037
PteI	GCGCGC	1 cut(s)	15
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	149, 772
RsaNI	GTAC	2 cut(s)	148, 771
RseI	CAYNNNNRTG	1 cut(s)	608
SaqAI	TTAA	9 cut(s)	9, 108, 126, 153, 174, 339, 582, 843, 1120
SatI	GCNGC	5 cut(s)	255, 258, 707, 731, 996
Sau3AI	GATC	5 cut(s)	750, 960, 1037, 1062, 1066
Sau96I	GGNCC	1 cut(s)	975
SchI	GAGTC	2 cut(s)	421, 502
ScrFI	CCNGG	1 cut(s)	763
SduI	GDGCHC	3 cut(s)	394, 605, 938
SfaNI	GCATC	2 cut(s)	622, 892
SfcI	CTRYAG	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	931
SinI	GGWCC	1 cut(s)	975
SlaI	CTCGAG	1 cut(s)	931
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	3 cut(s)	338, 524, 931
SmoI	CTYRAG	3 cut(s)	338, 524, 931
SnaBI	TACGTA	1 cut(s)	267
Sse9I	AATT	6 cut(s)	10, 34, 101, 246, 687, 757
SseBI	AGGCCT	1 cut(s)	955
SsiI	CCGC	2 cut(s)	459, 754
SspMI	CTAG	3 cut(s)	186, 320, 948
StuI	AGGCCT	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	761
TaaI	ACNGT	4 cut(s)	81, 396, 607, 940
TaiI	ACGT	2 cut(s)	269, 666
TaqI	TCGA	3 cut(s)	54, 932, 1065
TasI	AATT	6 cut(s)	10, 34, 101, 246, 687, 757
TatI	WGTACW	2 cut(s)	147, 770
TfiI	GAWTC	2 cut(s)	638, 1099
Tru1I	TTAA	9 cut(s)	9, 108, 126, 153, 174, 339, 582, 843, 1120
Tru9I	TTAA	9 cut(s)	9, 108, 126, 153, 174, 339, 582, 843, 1120
TscAI	CASTG	5 cut(s)	399, 663, 854, 880, 1005
TseI	GCWGC	5 cut(s)	254, 257, 706, 730, 995
TspRI	CASTG	5 cut(s)	399, 663, 854, 880, 1005
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	975
XhoI	CTCGAG	1 cut(s)	931
XspI	CTAG	3 cut(s)	186, 320, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.