Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0015717

Physical Location & Seq

Genomic Coordinates Forward (+)

11694673 .. 11695697

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGATGAGTTGTGACTTACAAACACAAAAATATATTGGAGCTCTGCTCCTTTCTACTTCATCTTCTCCATTTGCCATTTCTATTGCTGCTTGCAGGTTGAATAGGGTCCTGCGATTTGTGATCCTATCATTGGTATCAGCCTCGTTCCTAGTTTCCCTCATGTTTGCCTACCAATCCAATACCTCTTGTCCCACTGCCTTGAACGCACTCGTTTTAGCCGTGTTAGACTCCCTTGAAGCTTCGATGTGTGTTGAGCTTCGTGAAATTCGGGATTCTGCAATCGCAAACATCCGCACGGCTATGGATTCTACAGTTGCAGAAATCCGTCGTGATTTAGCTCTTGGCGTTGGGGAAGATTCAACTCCGGCCCGGATGTTTTCTGATTATGAGGAATCACACGATCTGAGTCATTCCAGTTTTCAAGGAGACAACAATCTACCAAAAATTCCATCAACAATTGAAGTCAATTATGTTCCACCGCTGCTCTTGTTGTCACCGTTGGTGCGAGCAACGGCAGCTTCATCACTCAAGCCACACTTGAACAATCCAGTGGCAGCCACAGTTCCACTACGAGATCTTGAGAAAGCCATGCCCATTGCAGCAAGTGTGCAGGGTGTTCATCTCATAACTACAAGAGCCACTAAATCTGCAGGTCTCTCTCAGCTGGAAGATAAGGAAACAAATACGAGGACCACAAAAAGTCACCATGAGGTATTGGAATCATTGATTTTCAATTTGTTAATCGGGAAGGCCAAATGGCATTGGCTTTTGCAGTTTATTCTGGCGTATTATCTTGGTGTTATTGTGGTCATTTATGATGTTTTATTGACAGAAATTAATGGATGGGTTAATTGGTATCTTGTGGGAAAATTTGTGAAGACAGATTTTTATGCTTTAGAACTGTTAAGGAAATGTCCAAGAGACCATTGTGTGAGAAGCATCCAATGGCAAAGTTTGTGTGGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0000053 GO:0003674 GO:0003824 GO:0004055 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0019627 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:0072350 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 ko05418 map00220 map00250 map01100 map01110 map01130 map01230 map05418

Pfam Domains

Protein Families

Arginosuc_synth

Protein Analysis

323

Amino Acids

35.65

Weight (kDa)

6.71

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015717)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g04860 pycom05g02320 pycom05g08830 pycom07g01190 pycom08g13400 pycom09g17550 pycom09g18320 pycom12494g00040 pycom13g01880 pycom13g01890 pycom13g25640 pycom14g04790 pycom15g23500 pycom15g30850 pycom15g32350 pycom17g14110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	84, 641
AciI	CCGC	2 cut(s)	292, 479
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	3 cut(s)	264, 444, 869
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	8 cut(s)	100, 202, 236, 360, 422, 461, 541, 733
AluBI	AGCT	6 cut(s)	41, 239, 256, 338, 518, 664
AluI	AGCT	6 cut(s)	41, 239, 256, 338, 518, 664
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	3 cut(s)	420, 659, 915
AlwI	GGATC	1 cut(s)	115
AoxI	GGCC	2 cut(s)	366, 750
ApeKI	GCWGC	5 cut(s)	86, 481, 515, 554, 599
ApoI	RAATTY	3 cut(s)	264, 444, 869
AseI	ATTAAT	1 cut(s)	837
AspS9I	GGNCC	3 cut(s)	106, 367, 690
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	2 cut(s)	486, 695
AvaII	GGWCC	2 cut(s)	106, 690
BanII	GRGCYC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	884
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	5 cut(s)	73, 468, 527, 566, 611
BccI	CCATC	2 cut(s)	457, 837
BceAI	ACGGC	3 cut(s)	203, 312, 528
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	420, 659, 915
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	309, 648
BfuAI	ACCTGC	2 cut(s)	84, 641
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	5 cut(s)	87, 482, 516, 555, 600
BlsI	GCNGC	5 cut(s)	88, 483, 517, 556, 601
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	2 cut(s)	106, 690
BmgT120I	GGNCC	3 cut(s)	106, 367, 690
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	948
BpiI	GAAGAC	1 cut(s)	884
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpuEI	CTTGAG	2 cut(s)	512, 599
BpuMI	CCSGG	1 cut(s)	370
BsaI	GGTCTC	2 cut(s)	659, 915
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	2 cut(s)	414, 548
Bse3DI	GCAATG	1 cut(s)	594
BseGI	GGATG	4 cut(s)	288, 378, 848, 939
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	2 cut(s)	395, 674
BseNI	ACTGG	2 cut(s)	414, 548
BseXI	GCAGC	5 cut(s)	73, 468, 527, 566, 611
BsgI	GTGCAG	1 cut(s)	629
BshFI	GGCC	2 cut(s)	368, 752
BsiHKAI	GWGCWC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	365, 370
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	3 cut(s)	420, 659, 915
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	368, 752
Bso31I	GGTCTC	2 cut(s)	659, 915
Bsp1286I	GDGCHC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	120, 400, 574
BspACI	CCGC	2 cut(s)	292, 479
BspANI	GGCC	2 cut(s)	368, 752
BspCNI	CTCAG	2 cut(s)	396, 673
BspLI	GGNNCC	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	652
BspMI	ACCTGC	2 cut(s)	84, 641
BspPI	GGATC	1 cut(s)	115
BspTNI	GGTCTC	2 cut(s)	659, 915
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	414, 548
BssMI	GATC	3 cut(s)	120, 400, 574
Bst4CI	ACNGT	4 cut(s)	313, 498, 562, 903
BstC8I	GCNNGC	2 cut(s)	91, 507
BstDEI	CTNAG	2 cut(s)	404, 660
BstF5I	GGATG	4 cut(s)	288, 378, 848, 939
BstKTI	GATC	3 cut(s)	123, 403, 577
BstMAI	GTCTC	3 cut(s)	420, 659, 915
BstMBI	GATC	3 cut(s)	120, 400, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 515
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	2 cut(s)	309, 648
BstV1I	GCAGC	5 cut(s)	73, 468, 527, 566, 611
BstV2I	GAAGAC	1 cut(s)	884
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	368, 752
BtsCI	GGATG	4 cut(s)	288, 378, 848, 939
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	2 cut(s)	192, 555
BveI	ACCTGC	2 cut(s)	84, 641
Cac8I	GCNNGC	2 cut(s)	91, 507
Cfr13I	GGNCC	3 cut(s)	106, 367, 690
CviAII	CATG	3 cut(s)	160, 589, 707
DdeI	CTNAG	2 cut(s)	404, 660
DpnI	GATC	3 cut(s)	122, 402, 576
DpnII	GATC	3 cut(s)	120, 400, 574
Ecl136II	GAGCTC	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	43
Eco31I	GGTCTC	2 cut(s)	659, 915
Eco47I	GGWCC	2 cut(s)	106, 690
Eco53kI	GAGCTC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	43
FaeI	CATG	3 cut(s)	163, 592, 710
FalI	AAGNNNNNCTT	2 cut(s)	521, 553
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	159, 588, 706
Fnu4HI	GCNGC	5 cut(s)	87, 482, 516, 555, 600
FokI	GGATG	4 cut(s)	275, 385, 855, 926
FriOI	GRGCYC	1 cut(s)	43
Fsp4HI	GCNGC	5 cut(s)	87, 482, 516, 555, 600
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	5 cut(s)	87, 482, 516, 555, 600
HaeIII	GGCC	2 cut(s)	368, 752
HapII	CCGG	2 cut(s)	365, 370
Hin1II	CATG	3 cut(s)	163, 592, 710
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	7 cut(s)	227, 272, 305, 356, 392, 406, 719
HpaII	CCGG	2 cut(s)	365, 370
HphI	GGTGA	2 cut(s)	486, 695
Hpy188I	TCNGA	2 cut(s)	382, 405
Hpy188III	TCNNGA	5 cut(s)	260, 269, 329, 578, 745
Hpy99I	CGWCG	1 cut(s)	330
HpyAV	CCTTC	1 cut(s)	742
HpyCH4III	ACNGT	4 cut(s)	313, 498, 562, 903
HpyCH4V	TGCA	7 cut(s)	93, 278, 317, 599, 610, 650, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 515
HpyF3I	CTNAG	2 cut(s)	404, 660
Hsp92II	CATG	3 cut(s)	163, 592, 710
Kzo9I	GATC	3 cut(s)	120, 400, 574
LmnI	GCTCC	2 cut(s)	38, 51
Lsp1109I	GCAGC	5 cut(s)	73, 468, 527, 566, 611
LweI	GCATC	1 cut(s)	948
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	11, 492, 701
MalI	GATC	3 cut(s)	122, 402, 576
MboI	GATC	3 cut(s)	120, 400, 574
MboII	GAAGA	4 cut(s)	54, 365, 680, 889
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	8 cut(s)	264, 444, 456, 466, 733, 834, 850, 869
MlyI	GAGTC	2 cut(s)	221, 415
MnlI	CCTC	6 cut(s)	151, 167, 193, 382, 681, 703
MseI	TTAA	4 cut(s)	740, 837, 849, 905
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	2 cut(s)	481, 664
MspI	CCGG	2 cut(s)	365, 370
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	203, 515
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	120, 400, 574
NlaIII	CATG	3 cut(s)	163, 592, 710
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	3 cut(s)	11, 492, 701
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	5 cut(s)	272, 305, 356, 392, 719
PkrI	GCNGC	5 cut(s)	88, 483, 517, 556, 601
PleI	GAGTC	2 cut(s)	221, 414
PpsI	GAGTC	2 cut(s)	221, 414
PpuMI	RGGWCCY	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	3 cut(s)	106, 367, 690
PspPPI	RGGWCCY	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	652
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	664
RseI	CAYNNNNRTG	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	43
SaqAI	TTAA	4 cut(s)	740, 837, 849, 905
SatI	GCNGC	5 cut(s)	87, 482, 516, 555, 600
Sau3AI	GATC	3 cut(s)	120, 400, 574
Sau96I	GGNCC	3 cut(s)	106, 367, 690
SchI	GAGTC	2 cut(s)	221, 415
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	43
SfaNI	GCATC	1 cut(s)	948
SfcI	CTRYAG	2 cut(s)	309, 648
SinI	GGWCC	2 cut(s)	106, 690
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	527, 578
SmoI	CTYRAG	2 cut(s)	527, 578
Sse9I	AATT	8 cut(s)	264, 444, 456, 466, 733, 834, 850, 869
SsiI	CCGC	2 cut(s)	292, 479
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	368
TaaI	ACNGT	4 cut(s)	313, 498, 562, 903
TaqI	TCGA	1 cut(s)	242
TasI	AATT	8 cut(s)	264, 444, 456, 466, 733, 834, 850, 869
TfiI	GAWTC	5 cut(s)	272, 305, 356, 392, 719
Tru1I	TTAA	4 cut(s)	740, 837, 849, 905
Tru9I	TTAA	4 cut(s)	740, 837, 849, 905
TscAI	CASTG	2 cut(s)	199, 555
TseFI	GTSAC	3 cut(s)	11, 492, 701
TseI	GCWGC	5 cut(s)	86, 481, 515, 554, 599
Tsp45I	GTSAC	3 cut(s)	11, 492, 701
TspDTI	ATGAA	3 cut(s)	48, 510, 608
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	199, 555
VpaK11BI	GGWCC	2 cut(s)	106, 690
VspI	ATTAAT	1 cut(s)	837
XapI	RAATTY	3 cut(s)	264, 444, 869
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.