Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007160

Physical Location & Seq

Genomic Coordinates Forward (+)

20944442 .. 20946925

Gene Structure 2484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTTCGCGCCAGAGAAATCTTGGTCCGGCTCCCTAAACGTTTAAAACCCACAACAATCTTACAACCAAGGAGAACATTTTGCTCCAAATCCGCTAAAAATGCCAACAATACTAACGCCGAGGAGACGAGTGTGAGTTCGTACCAGGAGCAGTATAAGCAGCTGGAGAAGCTCGACTTCATGACCGCCACCAAAATGCTCTTCACTGCTCCGCCCTCGAAAAAGAAATTCGGGCTCGATTTCCATTTGGTACAACTGTTCTTTTGTTGCATGCCTTCCTTGGCTGTGTATCTGGTGGCTCAGTATGCTCGCTATGAAATTAGAAGAATGGAAGCGGAACAGGAGATGAAAAAGAAGAAAGAAGAAGAAGCGAAAGCAAAAGAAATAGAAGTAAATGCTACCGAAGAAAAAGAAGCAGGATCTGTTCCAGAGCTTTTGGAGGTAAAAGTGAGACTAGATAAACTTGAAGAAACACTGAAGGAAATAGTGGTTGAATCGAAGAAGCAAACTGCCAGTGGGTTAACGAAAGATCAGGAAGTAGCTAGTGAGAAGAAAGATGGTGTAAAAGAGGCAACTAACAATAGTAGTTCAGACTCCAGCAAGCCTTCTGAGAAAGATCACCTTAGTAAACAGGATTCTGGAGAATCAAGACCGGCCCTCGGCAAAGAGAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Musclin

Protein Analysis

226

Amino Acids

25.57

Weight (kDa)

8.9

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80700 AT1G80980 AT1G80980
fragaria_vesca	FvH4_5g29190 FvH4_5g29190 FvH4_5g29190 FvH4_5g29190
malus_domestica	MD03G1160000.v1.1 MD17G1221100.v1.1
prunus_persica	Prupe.1G199000_v2.0.a1 Prupe.7G069400_v2.0.a1
pyrus_communis	pycom17g22550
rosa_chinensis	RchiOBHm_Chr7g0221831
rosa_laevigata	RLG00000002111
rosa_multiflora	Rmu_sc0005834.1_g000012 Rmu_sc0034732.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237590 Rroxscaffold_3G00237660
rosa_rugosa	Rorug07G0204100 Rorug07G0204100
rosa_samantha	Rh7AG344900 Rh7BG335400 Rh7CG362300 Rh7DG342500
rosa_wichuraiana	Rw7G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	4 cut(s)	93, 186, 212, 335
AclI	AACGTT	1 cut(s)	40
AclWI	GGATC	1 cut(s)	427
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	143, 252
AfiI	CCNNNNNNNGG	1 cut(s)	659
AgsI	TTSAA	2 cut(s)	467, 494
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	4 cut(s)	163, 172, 433, 542
AluI	AGCT	4 cut(s)	163, 172, 433, 542
Alw26I	GTCTC	2 cut(s)	119, 445
AlwI	GGATC	1 cut(s)	427
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	25, 655
AsuHPI	GGTGA	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	25
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BanII	GRGCYC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	119, 445
BfaI	CTAG	2 cut(s)	455, 543
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 655
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	146
BpmI	CTGGAG	3 cut(s)	185, 580, 660
BsaJI	CCNNGG	4 cut(s)	68, 120, 279, 658
Bsc4I	CCNNNNNNNGG	1 cut(s)	659
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	4 cut(s)	68, 120, 279, 658
BseLI	CCNNNNNNNGG	1 cut(s)	659
BseMII	CTCAG	2 cut(s)	314, 600
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	656
BsiSI	CCGG	2 cut(s)	28, 653
BslI	CCNNNNNNNGG	1 cut(s)	659
BsmAI	GTCTC	2 cut(s)	119, 445
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	419, 529, 616
BspACI	CCGC	4 cut(s)	93, 186, 212, 335
BspANI	GGCC	1 cut(s)	656
BspCNI	CTCAG	2 cut(s)	313, 601
BspFNI	CGCG	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	427
BspQI	GCTCTTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	652
BssECI	CCNNGG	4 cut(s)	68, 120, 279, 658
BssMI	GATC	3 cut(s)	419, 529, 616
BssT1I	CCWWGG	2 cut(s)	68, 279
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	272, 310, 602
BstDEI	CTNAG	3 cut(s)	300, 609, 623
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	3 cut(s)	422, 532, 619
BstMAI	GTCTC	2 cut(s)	119, 445
BstMBI	GATC	3 cut(s)	419, 529, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 157, 169, 305
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	656
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 473, 520
Cac8I	GCNNGC	3 cut(s)	272, 310, 602
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	25, 655
Csp6I	GTAC	2 cut(s)	142, 251
CviAII	CATG	2 cut(s)	181, 271
CviQI	GTAC	2 cut(s)	142, 251
DdeI	CTNAG	3 cut(s)	300, 609, 623
DpnI	GATC	3 cut(s)	421, 531, 618
DpnII	GATC	3 cut(s)	419, 529, 616
DraI	TTTAAA	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	68, 279
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	2 cut(s)	68, 279
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	68, 279
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	184, 274
FaiI	YATR	5 cut(s)	156, 182, 272, 306, 315
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 606, 638
FatI	CATG	2 cut(s)	180, 270
Fnu4HI	GCNGC	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	2 cut(s)	455, 543
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	3 cut(s)	185, 580, 660
HaeIII	GGCC	1 cut(s)	656
HapII	CCGG	2 cut(s)	28, 653
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	184, 274
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	4 cut(s)	494, 593, 635, 644
HpaI	GTTAAC	1 cut(s)	522
HpaII	CCGG	2 cut(s)	28, 653
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	2 cut(s)	522, 629
Hpy188I	TCNGA	2 cut(s)	592, 610
Hpy188III	TCNNGA	5 cut(s)	181, 428, 533, 639, 648
Hpy8I	GTNNAC	2 cut(s)	522, 629
HpyAV	CCTTC	3 cut(s)	285, 472, 615
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 157, 169, 305
HpyF3I	CTNAG	3 cut(s)	300, 609, 623
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	184, 274
HspAI	GCGC	1 cut(s)	9
KspAI	GTTAAC	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	419, 529, 616
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	4 cut(s)	36, 89, 148, 214
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	455, 543
MaeII	ACGT	1 cut(s)	40
MalI	GATC	3 cut(s)	421, 531, 618
MboI	GATC	3 cut(s)	419, 529, 616
MboII	GAAGA	9 cut(s)	193, 336, 367, 374, 377, 416, 479, 511, 562
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	2 cut(s)	227, 318
MlyI	GAGTC	1 cut(s)	587
MnlI	CCTC	5 cut(s)	115, 226, 433, 562, 668
MseI	TTAA	2 cut(s)	44, 521
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	2 cut(s)	28, 653
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	101, 157, 169, 305
NdeII	GATC	3 cut(s)	419, 529, 616
NlaIII	CATG	2 cut(s)	184, 274
NlaIV	GGNNCC	1 cut(s)	32
NmeAIII	GCCGAG	2 cut(s)	145, 639
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	494, 635, 644
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
Psp1406I	AACGTT	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	25, 655
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	2 cut(s)	143, 252
RsaNI	GTAC	2 cut(s)	142, 251
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	44, 521
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	3 cut(s)	419, 529, 616
Sau96I	GGNCC	2 cut(s)	25, 655
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	43, 165, 174, 435, 444, 544, 624
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	2 cut(s)	227, 318
SsiI	CCGC	4 cut(s)	93, 186, 212, 335
SspMI	CTAG	2 cut(s)	455, 543
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	2 cut(s)	68, 279
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	4 cut(s)	174, 218, 237, 497
TasI	AATT	2 cut(s)	227, 318
TfiI	GAWTC	3 cut(s)	494, 635, 644
Tru1I	TTAA	2 cut(s)	44, 521
Tru9I	TTAA	2 cut(s)	44, 521
TscAI	CASTG	3 cut(s)	211, 480, 520
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	169, 330, 362
TspRI	CASTG	3 cut(s)	211, 480, 520
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XspI	CTAG	2 cut(s)	455, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.