Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007719

Physical Location & Seq

Genomic Coordinates Forward (+)

20948045 .. 20949803

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGCGCCTAATCCGATCCCTGAGAAAATCCACTCCTTTTCCTTCTTCTTCCAGAATCCCAATTAAGCAAACGCCCACTTTGCATTTCGCACATGAAAAACAAGTCTCCCTCTTAAACCCTTCACTCCAACCATCGCAATTCCGGCGAACTTACATCTCCGAAATGCGCAAATCGGCCTTCGAAGGCAACATTCTCAGACTCCTCCGGAGGGAAATACAGTACGAGCTCGATCACTCTCCTGCCACTCAGCCAGTTACAAAATTTAAGTCGTTTACAGTTAACGACCGGCCTGGTGAGCAATGGATAACCTTGAAGACAAAGTTTGGAGAGAAAGAAGACATTAAGATCGAAGCCACGATGTTTGATGGATCTGTTCCTGTTCCAAATTCCAAAGGTGGTGCTAGCCTTGGAAAAGATGTGCAGCTTCACATTACAATGATTGTTAATATCTCCAAGAAGGAAGGCGGCAATGTGTTTGAGATTATGTGTTCAGCTTGGCCAGATACTATAGAGATCAACAAGCTTTTCGTCCGAAAACCTGAGAAGATGCCAGCTCAGCCTTATGCGGGTCCTGAGTTCGAGGAACTTGATGATGAGTTGCAAGACTCACTTTATGAATTCTTGGAAGCGAGGAGTATAAACGATGATCTTGCTATTTTCTTGCACGAATACATGAAGAACAAAGATAAAACTGAGTTCATTAGATGGATGGGGACTGTGAAATCATTTATTGAAAAGAAAGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

251

Amino Acids

28.86

Weight (kDa)

8.48

Isoelectric Point (pI)

64.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAM33	PF02330	69 - 245	1.5e-31	Mitochondrial glycoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007719)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15870 AT1G80720 AT1G80720
fragaria_vesca	FvH4_6g28850 FvH4_6g28850
malus_domestica	MD17G1221200.v1.1
prunus_persica	Prupe.3G096300_v2.0.a1 Prupe.3G096300_v2.0.a1
pyrus_communis	pycom09g14170 pycom17g22560
rosa_chinensis	RchiOBHm_Chr2g0133381
rosa_laevigata	RLG00000019328
rosa_multiflora	Rmu_sc0003874.1_g000009 Rmu_sc0006616.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111210
rosa_rugosa	Rorug02G0311200 Rorug02G0311300 Rorug02G0311400.1 Rorug02G0311500
rosa_samantha	Rh2AG363900 Rh2BG369800 Rh2CG347100 Rh2DG386600
rosa_wichuraiana	Rw2G029620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	2 cut(s)	468, 569
AclWI	GGATC	2 cut(s)	12, 379
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	3 cut(s)	263, 388, 620
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	211, 569
AgsI	TTSAA	2 cut(s)	316, 737
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	5 cut(s)	229, 427, 497, 526, 557
AluI	AGCT	5 cut(s)	229, 427, 497, 526, 557
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	12, 379
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	3 cut(s)	177, 290, 500
ApeKI	GCWGC	1 cut(s)	424
ApoI	RAATTY	3 cut(s)	263, 388, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AscI	GGCGCGCC	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	7, 9, 171
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	183
AsuNHI	GCTAGC	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	2 cut(s)	323, 345
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	4 cut(s)	142, 362, 702, 706
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	2 cut(s)	425, 469
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	2 cut(s)	426, 470
Bme1390I	CCNGG	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	540
BmtI	GCTAGC	1 cut(s)	408
BpiI	GAAGAC	2 cut(s)	323, 345
Bpu1102I	GCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 569
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	254
Bse3DI	GCAATG	2 cut(s)	308, 478
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	2 cut(s)	211, 569
BseMI	GCAATG	2 cut(s)	308, 478
BseMII	CTCAG	7 cut(s)	14, 211, 263, 534, 567, 572, 687
BseNI	ACTGG	1 cut(s)	254
BsePI	GCGCGC	1 cut(s)	5
BseRI	GAGGAG	2 cut(s)	194, 649
BseXI	GCAGC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	179, 292, 502
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	145, 208, 289
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	2 cut(s)	211, 569
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	730
BsnI	GGCC	3 cut(s)	179, 292, 502
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	207
Bsp143I	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	2 cut(s)	468, 569
BspANI	GGCC	3 cut(s)	179, 292, 502
BspCNI	CTCAG	7 cut(s)	15, 210, 262, 535, 568, 571, 688
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	7
BspLI	GGNNCC	1 cut(s)	573
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	12, 379
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	2 cut(s)	308, 478
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	409
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	222, 280, 721
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	7, 406, 555
BstDEI	CTNAG	7 cut(s)	23, 197, 249, 543, 558, 576, 696
BstF5I	GGATG	1 cut(s)	717
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	3 cut(s)	7, 9, 171
BstKTI	GATC	6 cut(s)	20, 235, 351, 374, 519, 652
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 145, 298, 559
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	2 cut(s)	323, 345
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	3 cut(s)	179, 292, 502
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	717
Cac8I	GCNNGC	3 cut(s)	7, 406, 555
CfoI	GCGC	3 cut(s)	7, 9, 171
Cfr10I	RCCGGY	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	223
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	2 cut(s)	95, 676
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	7 cut(s)	23, 197, 249, 543, 558, 576, 696
DpnI	GATC	6 cut(s)	19, 234, 350, 373, 518, 651
DpnII	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
EaeI	YGGCCR	1 cut(s)	500
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	572
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	2 cut(s)	98, 679
FaiI	YATR	7 cut(s)	96, 488, 512, 567, 618, 641, 677
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	2 cut(s)	94, 675
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	425, 469
FokI	GGATG	1 cut(s)	724
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	425, 469
FspBI	CTAG	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	3 cut(s)	6, 8, 170
GluI	GCNGC	2 cut(s)	425, 469
HaeIII	GGCC	3 cut(s)	179, 292, 502
HapII	CCGG	3 cut(s)	145, 208, 289
HhaI	GCGC	3 cut(s)	7, 9, 171
Hin1II	CATG	2 cut(s)	98, 679
Hin6I	GCGC	3 cut(s)	5, 7, 169
HinP1I	GCGC	3 cut(s)	5, 7, 169
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	3 cut(s)	57, 201, 608
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	3 cut(s)	145, 208, 289
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	276, 283
Hpy188I	TCNGA	4 cut(s)	17, 163, 200, 536
Hpy188III	TCNNGA	3 cut(s)	54, 208, 575
Hpy8I	GTNNAC	2 cut(s)	276, 283
HpyAV	CCTTC	6 cut(s)	54, 132, 179, 190, 454, 458
HpyCH4III	ACNGT	3 cut(s)	222, 280, 721
HpyCH4V	TGCA	4 cut(s)	85, 424, 604, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 145, 298, 559
HpyF3I	CTNAG	7 cut(s)	23, 197, 249, 543, 558, 576, 696
Hsp92II	CATG	2 cut(s)	98, 679
HspAI	GCGC	3 cut(s)	5, 7, 169
Kpn2I	TCCGGA	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	1 cut(s)	540
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	6 cut(s)	19, 234, 350, 373, 518, 651
MboI	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
MboII	GAAGA	6 cut(s)	39, 42, 328, 350, 559, 691
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	502
MluCI	AATT	5 cut(s)	63, 140, 263, 388, 620
MluNI	TGGCCA	1 cut(s)	502
MlyI	GAGTC	2 cut(s)	195, 602
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	122, 204, 215, 577, 627
Mox20I	TGGCCA	1 cut(s)	502
MroI	TCCGGA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	502
MseI	TTAA	6 cut(s)	66, 116, 267, 282, 345, 447
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	502
MspI	CCGG	3 cut(s)	145, 208, 289
MspR9I	CCNGG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	4 cut(s)	82, 145, 298, 559
NdeII	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	2 cut(s)	98, 679
NlaIV	GGNNCC	1 cut(s)	573
NsbI	TGCGCA	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	183
PalAI	GGCGCGCC	1 cut(s)	5
PauI	GCGCGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	426, 470
PleI	GAGTC	2 cut(s)	195, 602
PpsI	GAGTC	2 cut(s)	195, 602
PpuMI	RGGWCCY	1 cut(s)	572
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	572
PspPPI	RGGWCCY	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	371
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	6 cut(s)	66, 116, 267, 282, 345, 447
SatI	GCNGC	2 cut(s)	425, 469
Sau3AI	GATC	6 cut(s)	17, 232, 348, 371, 516, 649
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	2 cut(s)	195, 602
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	8 cut(s)	231, 314, 400, 429, 499, 528, 544, 559
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	183
SgsI	GGCGCGCC	1 cut(s)	5
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	63, 140, 263, 388, 620
SsiI	CCGC	2 cut(s)	468, 569
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	3 cut(s)	222, 280, 721
TaqI	TCGA	4 cut(s)	183, 231, 351, 582
TasI	AATT	5 cut(s)	63, 140, 263, 388, 620
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	6 cut(s)	66, 116, 267, 282, 345, 447
Tru9I	TTAA	6 cut(s)	66, 116, 267, 282, 345, 447
TseI	GCWGC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	111, 633, 691, 692
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	3 cut(s)	263, 388, 620
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.