pycom17g23410

ATP synthase protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010298
Physical Location & Seq
Forward (+)
21802149 .. 21805817
3669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 999 bp
ATGGCGATTCTCAACTCTTATCTCTCAGTGACGTCCACAGCCACACCCATCTCCCCAGACTCAGCAACTCCACCGGTACCCGACCCGAGACAGACCAAGATCCTATTGCCCAAGAAGAAGCCCATGAAATGGTCCACCGGAGTTGCTCCCGGCGATTACGGCGGACCTCCCACCACCACCAAGCTCCGCAAGTACTGGGGCGGCGAGGATGACCCTCTAACCTCTGACGATTTCATTTGGAACAGAGAATTCATGGACCGCATGAAAAAACTCATTCAGGAGCCCAACTCTTCCACTCAATCCACTCCTGTCAAGGAAAAGCCTTCCGGGTTTCTCAGCTTGAATAGAGTCATGGGCCTTGACAGTTTAGAAGTTGATTTGAGCAAACAGCTCACAGCTGCTCCTGCCCAACCCAAGTTAGAAGCGCAAGTTGAGGCGCCAGTGAAAAGTGCCAGCAGTACTGCTATCAAATGGAAACTGGCACCAACACGGCGTGAGCAAGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGAGGCAGTGAAGTGATGTTTCGGGAATTAAGGCGTTCTCAGGAGGACCCAAAAGTAGTGGCTGAGCAGTATAGGAAGCAGTATTTTAGGTTAAAGAAGAGGTTGCAATTCCTTACACTGGGTATAGGCGGTGTTGGATTAGTCTCGGCTTATGTTTCATACTCCCCTGAAATTACGGCTAGCTACGGTGTTGGGTTGCTTGGTTCCGTAGCTTATATGCGTATGCTGGGGAGTAGCGTGGATTCCATGGCAGATGGAGCAAGGGGACTTCTCAAGGGAGCGATTGGGCAACCCAGGCTATTGGTTCCTGTTGTATTAGTCATGATATTTAACAGATGGAATGGGATCGATCATTCCACAATACGGGTTTATGCACCTGGAATTGATACCAATGCTGGTGGGATTCTTCACATACAAGATTGCTACTTTCATCCAAGCTATAGAGGAAGCACTTCCCGGGGTTGA

Protein Analysis

333

Amino Acids

36.47

Weight (kDa)

9.67

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGL160_C PF24763 194 - 294 9.7e-50 CGL160, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31040
fragaria_vesca FvH4_6g27380 FvH4_6g27380 FvH4_6g27380 FvH4_6g27380
malus_domestica MD09G1238000.v1.1 MD17G1230900.v1.1
prunus_persica Prupe.3G118500_v2.0.a1
pyrus_communis pycom09g15650 pycom17g23410
rosa_chinensis RchiOBHm_Chr2g0129651
rosa_laevigata RLG00000019093
rosa_multiflora Rmu_sc0020548.1_g000001
rosa_roxburghii Rroxscaffold_2G00114480
rosa_rugosa Rorug02G0288100 Rorug02G0288100
rosa_samantha Rh2AG339400 Rh2BG348200 Rh2CG326800 Rh2DG366300
rosa_wichuraiana Rw2G027860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
Acc65I GGTACC 1 cut(s) 76
AccB1I GGYRCC 3 cut(s) 76, 436, 481
AccB7I CCANNNNNTGG 1 cut(s) 129
AciI CCGC 5 cut(s) 162, 187, 201, 259, 663
AclWI GGATC 2 cut(s) 94, 887
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 2 cut(s) 32, 437
AdeI CACNNNGTG 1 cut(s) 494
AfaI GTAC 3 cut(s) 78, 194, 460
AfiI CCNNNNNNNGG 3 cut(s) 129, 652, 897
AgeI ACCGGT 1 cut(s) 73
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 2 cut(s) 827, 910
AluBI AGCT 7 cut(s) 184, 339, 391, 398, 717, 746, 972
AluI AGCT 7 cut(s) 184, 339, 391, 398, 717, 746, 972
Alw26I GTCTC 2 cut(s) 82, 682
AlwI GGATC 2 cut(s) 94, 887
Ama87I CYCGRG 2 cut(s) 85, 990
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 398, 527
ApoI RAATTY 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 73
Asp700I GAANNNNTTC 1 cut(s) 985
Asp718I GGTACC 1 cut(s) 76
AspLEI GCGC 2 cut(s) 427, 439
AspS9I GGNCC 5 cut(s) 132, 164, 256, 355, 580
AsuC2I CCSGG 4 cut(s) 150, 328, 991, 992
AsuNHI GCTAGC 1 cut(s) 713
AvaI CYCGRG 2 cut(s) 85, 990
AvaII GGWCC 4 cut(s) 132, 164, 256, 580
BanI GGYRCC 3 cut(s) 76, 436, 481
BanII GRGCYC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 385, 514
BccI CCATC 3 cut(s) 56, 782, 864
BceAI ACGGC 3 cut(s) 175, 506, 726
BciT130I CCWGG 2 cut(s) 829, 912
BcnI CCSGG 4 cut(s) 150, 328, 991, 992
BcoDI GTCTC 2 cut(s) 82, 682
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 973
BfoI RGCGCY 1 cut(s) 440
BisI GCNGC 3 cut(s) 202, 399, 528
BlpI GCTNAGC 1 cut(s) 597
BlsI GCNGC 3 cut(s) 203, 400, 529
BmcAI AGTACT 2 cut(s) 194, 460
Bme1390I CCNGG 6 cut(s) 150, 328, 829, 912, 991, 992
Bme18I GGWCC 4 cut(s) 132, 164, 256, 580
BmeT110I CYCGRG 2 cut(s) 85, 990
BmgT120I GGNCC 5 cut(s) 132, 164, 256, 355, 580
BmiI GGNNCC 7 cut(s) 78, 282, 438, 483, 582, 739, 840
BmrFI CCNGG 6 cut(s) 150, 328, 829, 912, 991, 992
BmrI ACTGGG 2 cut(s) 205, 662
BmtI GCTAGC 1 cut(s) 717
BmuI ACTGGG 2 cut(s) 205, 662
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 791
BpuMI CCSGG 4 cut(s) 150, 328, 991, 992
Bsa29I ATCGAT 1 cut(s) 882
BsaHI GRCGYC 2 cut(s) 32, 437
BsaJI CCNNGG 4 cut(s) 780, 827, 990, 991
BsaWI WCCGGW 2 cut(s) 73, 137
BsaXI ACNNNNNCTCC 2 cut(s) 385, 415
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 652, 897
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 5 cut(s) 200, 440, 483, 538, 657
BseBI CCWGG 2 cut(s) 829, 912
BseCI ATCGAT 1 cut(s) 882
BseDI CCNNGG 4 cut(s) 780, 827, 990, 991
BseGI GGATG 2 cut(s) 214, 964
BseLI CCNNNNNNNGG 3 cut(s) 129, 652, 897
BseMII CTCAG 5 cut(s) 39, 75, 349, 587, 588
BseNI ACTGG 5 cut(s) 200, 440, 483, 538, 657
BseXI GCAGC 2 cut(s) 385, 514
BseYI CCCAGC 1 cut(s) 760
BshFI GGCC 1 cut(s) 357
BshNI GGYRCC 3 cut(s) 76, 436, 481
BshTI ACCGGT 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 882
BsiHKCI CYCGRG 2 cut(s) 85, 990
BsiSI CCGG 5 cut(s) 74, 138, 150, 327, 991
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 3 cut(s) 129, 652, 897
BsmAI GTCTC 2 cut(s) 82, 682
BsmFI GGGAC 1 cut(s) 813
BsnI GGCC 1 cut(s) 357
BsoBI CYCGRG 2 cut(s) 85, 990
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 99, 879, 883
Bsp1720I GCTNAGC 1 cut(s) 597
Bsp19I CCATGG 1 cut(s) 780
BspACI CCGC 5 cut(s) 162, 187, 201, 259, 663
BspANI GGCC 1 cut(s) 357
BspCNI CTCAG 5 cut(s) 38, 74, 348, 586, 589
BspDI ATCGAT 1 cut(s) 882
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 7 cut(s) 78, 282, 438, 483, 582, 739, 840
BspOI GCTAGC 1 cut(s) 717
BspPI GGATC 2 cut(s) 94, 887
BspT107I GGYRCC 3 cut(s) 76, 436, 481
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 5 cut(s) 200, 440, 483, 538, 657
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 4 cut(s) 780, 827, 990, 991
BssMI GATC 3 cut(s) 99, 879, 883
BssNI GRCGYC 2 cut(s) 32, 437
BssT1I CCWWGG 1 cut(s) 780
Bst2UI CCWGG 2 cut(s) 829, 912
Bst4CI ACNGT 2 cut(s) 365, 722
Bst6I CTCTTC 2 cut(s) 295, 626
BstACI GRCGYC 2 cut(s) 32, 437
BstC8I GCNNGC 2 cut(s) 454, 715
BstDEI CTNAG 6 cut(s) 25, 61, 335, 522, 573, 597
BstDSI CCRYGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 214, 964
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 2 cut(s) 427, 439
BstKTI GATC 3 cut(s) 102, 882, 886
BstMAI GTCTC 2 cut(s) 82, 682
BstMBI GATC 3 cut(s) 99, 879, 883
BstMWI GCNNNNNNNGC 5 cut(s) 159, 404, 524, 791, 829
BstNI CCWGG 2 cut(s) 829, 912
BstSCI CCNGG 6 cut(s) 148, 326, 827, 910, 989, 990
BstSFI CTRYAG 1 cut(s) 973
BstV1I GCAGC 2 cut(s) 385, 514
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 835
BstYI RGATCY 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 882
BsuRI GGCC 1 cut(s) 357
BsuTUI ATCGAT 1 cut(s) 882
BtgI CCRYGG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 214, 964
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 4 cut(s) 33, 447, 547, 650
Cac8I GCNNGC 2 cut(s) 454, 715
CciI TCATGA 1 cut(s) 855
CfoI GCGC 2 cut(s) 427, 439
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 5 cut(s) 132, 164, 256, 355, 580
Cfr9I CCCGGG 1 cut(s) 990
ClaI ATCGAT 1 cut(s) 882
Csp6I GTAC 3 cut(s) 77, 193, 459
CspAI ACCGGT 1 cut(s) 73
CspCI CAANNNNNGTGG 8 cut(s) 124, 159, 488, 523, 573, 608, 913, 948
CviAII CATG 6 cut(s) 124, 253, 262, 352, 781, 856
CviQI GTAC 3 cut(s) 77, 193, 459
DdeI CTNAG 6 cut(s) 25, 61, 335, 522, 573, 597
DinI GGCGCC 1 cut(s) 438
DpnI GATC 3 cut(s) 101, 881, 885
DpnII GATC 3 cut(s) 99, 879, 883
DraIII CACNNNGTG 1 cut(s) 494
Eam1104I CTCTTC 2 cut(s) 295, 626
EarI CTCTTC 2 cut(s) 295, 626
EciI GGCGGA 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 780
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 4 cut(s) 132, 164, 256, 580
Eco88I CYCGRG 2 cut(s) 85, 990
EcoO109I RGGNCCY 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 248
EcoRII CCWGG 2 cut(s) 827, 910
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 285
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 6 cut(s) 127, 256, 265, 355, 784, 859
FaqI GGGAC 1 cut(s) 813
FatI CATG 6 cut(s) 123, 252, 261, 351, 780, 855
Fnu4HI GCNGC 3 cut(s) 202, 399, 528
FokI GGATG 2 cut(s) 221, 951
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 3 cut(s) 202, 399, 528
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 426, 438
GluI GCNGC 3 cut(s) 202, 399, 528
GsaI CCCAGC 1 cut(s) 764
GsuI CTGGAG 1 cut(s) 555
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 1 cut(s) 357
HapII CCGG 5 cut(s) 74, 138, 150, 327, 991
HhaI GCGC 2 cut(s) 427, 439
Hin1I GRCGYC 2 cut(s) 32, 437
Hin1II CATG 6 cut(s) 127, 256, 265, 355, 784, 859
Hin6I GCGC 2 cut(s) 425, 437
HinP1I GCGC 2 cut(s) 425, 437
HinfI GANTC 5 cut(s) 7, 59, 348, 776, 937
HpaII CCGG 5 cut(s) 74, 138, 150, 327, 991
Hpy166II GTNNAC 2 cut(s) 36, 135
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 4 cut(s) 278, 557, 575, 856
Hpy8I GTNNAC 2 cut(s) 36, 135
HpyAV CCTTC 1 cut(s) 333
HpyCH4III ACNGT 2 cut(s) 365, 722
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 530, 640, 908
HpyF10VI GCNNNNNNNGC 5 cut(s) 159, 404, 524, 791, 829
HpyF3I CTNAG 6 cut(s) 25, 61, 335, 522, 573, 597
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 2 cut(s) 32, 437
Hsp92II CATG 6 cut(s) 127, 256, 265, 355, 784, 859
HspAI GCGC 2 cut(s) 425, 437
KasI GGCGCC 1 cut(s) 436
KpnI GGTACC 1 cut(s) 80
Kzo9I GATC 3 cut(s) 99, 879, 883
LmnI GCTCC 6 cut(s) 151, 189, 280, 406, 791, 812
Lsp1109I GCAGC 2 cut(s) 385, 514
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 28
MalI GATC 3 cut(s) 101, 881, 885
MboI GATC 3 cut(s) 99, 879, 883
MboII GAAGA 4 cut(s) 127, 282, 643, 932
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 5 cut(s) 248, 560, 641, 705, 915
Mly113I GGCGCC 1 cut(s) 437
MlyI GAGTC 2 cut(s) 53, 357
MmeI TCCRAC 1 cut(s) 649
MnlI CCTC 9 cut(s) 177, 199, 225, 232, 427, 530, 571, 627, 971
MroXI GAANNNNTTC 1 cut(s) 985
MseI TTAA 3 cut(s) 563, 626, 864
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 5 cut(s) 74, 138, 150, 327, 991
MspR9I CCNGG 6 cut(s) 150, 328, 829, 912, 991, 992
MvaI CCWGG 2 cut(s) 829, 912
MwoI GCNNNNNNNGC 5 cut(s) 159, 404, 524, 791, 829
NarI GGCGCC 1 cut(s) 437
NciI CCSGG 4 cut(s) 150, 328, 991, 992
NcoI CCATGG 1 cut(s) 780
NdeII GATC 3 cut(s) 99, 879, 883
NheI GCTAGC 1 cut(s) 713
NlaIII CATG 6 cut(s) 127, 256, 265, 355, 784, 859
NlaIV GGNNCC 7 cut(s) 78, 282, 438, 483, 582, 739, 840
NmeAIII GCCGAG 1 cut(s) 659
NmuCI GTSAC 1 cut(s) 28
PagI TCATGA 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 985
PfeI GAWTC 3 cut(s) 7, 776, 937
PflMI CCANNNNNTGG 1 cut(s) 129
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 3 cut(s) 203, 400, 529
PleI GAGTC 2 cut(s) 53, 356
PluTI GGCGCC 1 cut(s) 440
PpsI GAGTC 2 cut(s) 53, 356
PpuMI RGGWCCY 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 827, 910
PspFI CCCAGC 1 cut(s) 760
PspGI CCWGG 2 cut(s) 827, 910
PspN4I GGNNCC 7 cut(s) 78, 282, 438, 483, 582, 739, 840
PspPI GGNCC 5 cut(s) 132, 164, 256, 355, 580
PspPPI RGGWCCY 1 cut(s) 580
PsuI RGATCY 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 78, 194, 460
RsaNI GTAC 3 cut(s) 77, 193, 459
SaqAI TTAA 3 cut(s) 563, 626, 864
SatI GCNGC 3 cut(s) 202, 399, 528
Sau3AI GATC 3 cut(s) 99, 879, 883
Sau96I GGNCC 5 cut(s) 132, 164, 256, 355, 580
ScaI AGTACT 2 cut(s) 194, 460
SchI GAGTC 2 cut(s) 53, 357
ScrFI CCNGG 6 cut(s) 150, 328, 829, 912, 991, 992
SduI GDGCHC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 973
SfoI GGCGCC 1 cut(s) 438
SinI GGWCC 4 cut(s) 132, 164, 256, 580
SmaI CCCGGG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 5 cut(s) 248, 560, 641, 705, 915
SsiI CCGC 5 cut(s) 162, 187, 201, 259, 663
SspDI GGCGCC 1 cut(s) 436
SspMI CTAG 1 cut(s) 714
StyD4I CCNGG 6 cut(s) 148, 326, 827, 910, 989, 990
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 2 cut(s) 365, 722
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 882
TasI AATT 5 cut(s) 248, 560, 641, 705, 915
TatI WGTACW 2 cut(s) 192, 458
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 3 cut(s) 7, 776, 937
Tru1I TTAA 3 cut(s) 563, 626, 864
Tru9I TTAA 3 cut(s) 563, 626, 864
TscAI CASTG 4 cut(s) 33, 447, 547, 657
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 2 cut(s) 398, 527
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 6 cut(s) 140, 223, 241, 278, 681, 953
TspGWI ACGGA 1 cut(s) 730
TspMI CCCGGG 1 cut(s) 990
TspRI CASTG 4 cut(s) 33, 447, 547, 657
Van91I CCANNNNNTGG 1 cut(s) 129
VpaK11BI GGWCC 4 cut(s) 132, 164, 256, 580
XapI RAATTY 1 cut(s) 248
XmaI CCCGGG 1 cut(s) 990
XmnI GAANNNNTTC 1 cut(s) 985
XspI CTAG 1 cut(s) 714
ZraI GACGTC 1 cut(s) 33
ZrmI AGTACT 2 cut(s) 194, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.