Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

21896462 .. 21897038

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGTTTTCTATTCAGAGCTCTGCTCTTAACTCTGTTTTTAGTTTCCCACCAAACAAAAGCACAGGAATTCAATTCCTCTTTCTCCTCCAATAATGCTTTTTCTGCTTCTGCTACCAGCACTGCTAGTACTACCAGCTCAGTCGCCAGAAAGCTTGCAGGAAAATGCAACTGGTTCCGCGGCACATGGGTCTACGATGCTTCTGCTAAACCATCCTACTATTCCTCCACCTGTCCCTTCTTAGATCCACAGTTCGACTGCCTAAAGTACGGCCGCCGCGACACCGCTTTCCTCAAATACAGATGGCAACCCTTCTCCTGCGCCCTTCCCAGGTTCAATGGGTTGTATTTCTTGGAGAAATGGAGGGGGAAGAAGATCGATGTTTGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

131

Amino Acids

14.78

Weight (kDa)

9.68

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	55 - 107	2.9e-21	PMR5 N terminal Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	2 cut(s)	180, 279
AciI	CCGC	5 cut(s)	178, 180, 274, 277, 285
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	2 cut(s)	130, 269
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	73, 337
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	3 cut(s)	20, 138, 154
AluI	AGCT	3 cut(s)	20, 138, 154
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	271
ApoI	RAATTY	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	22
BccI	CCATC	2 cut(s)	220, 297
BceAI	ACGGC	1 cut(s)	286
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BciT130I	CCWGG	1 cut(s)	331
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	3 cut(s)	181, 274, 277
BlsI	GCNGC	3 cut(s)	182, 275, 278
BmcAI	AGTACT	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
Bsa29I	ATCGAT	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	178, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	178, 329
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	271
Bsh1236I	CGCG	2 cut(s)	180, 279
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	378
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	244, 375
BspACI	CCGC	5 cut(s)	178, 180, 274, 277, 285
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	152
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	2 cut(s)	180, 279
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	178, 329
BssMI	GATC	2 cut(s)	244, 375
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	252
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	139, 241
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	212
BstFNI	CGCG	2 cut(s)	180, 279
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	247, 378
BstMBI	GATC	2 cut(s)	244, 375
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	329
BstUI	CGCG	2 cut(s)	180, 279
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZI	CGGCCG	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	323
Cfr42I	CCGCGG	1 cut(s)	181
ClaI	ATCGAT	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	129, 268
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	4 cut(s)	20, 138, 154, 273
CviKI_1	RGCY	4 cut(s)	20, 138, 154, 273
CviQI	GTAC	2 cut(s)	129, 268
DdeI	CTNAG	2 cut(s)	139, 241
DpnI	GATC	2 cut(s)	246, 377
DpnII	GATC	2 cut(s)	244, 375
EaeI	YGGCCR	1 cut(s)	271
EagI	CGGCCG	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	20
EclXI	CGGCCG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	22
Eco52I	CGGCCG	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	20
EcoICRI	GAGCTC	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	1 cut(s)	189
FaiI	YATR	1 cut(s)	187
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	181, 274, 277
FokI	GGATG	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	181, 274, 277
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	3 cut(s)	181, 274, 277
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	247, 322, 335
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	158, 168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	139, 241
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	1 cut(s)	321
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	244, 375
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	126
MalI	GATC	2 cut(s)	246, 377
MboI	GATC	2 cut(s)	244, 375
MboII	GAAGA	2 cut(s)	382, 385
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	68, 73
MnlI	CCTC	5 cut(s)	88, 97, 235, 302, 357
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	331
MvnI	CGCG	2 cut(s)	180, 279
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeII	GATC	2 cut(s)	244, 375
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	182, 275, 278
Psp124BI	GAGCTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	130, 269
RsaNI	GTAC	2 cut(s)	129, 268
SacI	GAGCTC	1 cut(s)	22
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	181, 274, 277
Sau3AI	GATC	2 cut(s)	244, 375
ScaI	AGTACT	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	5 cut(s)	22, 140, 156, 233, 335
SfaNI	GCATC	1 cut(s)	187
Sfr303I	CCGCGG	1 cut(s)	181
SgrBI	CCGCGG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	68, 73
SsiI	CCGC	5 cut(s)	178, 180, 274, 277, 285
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	255, 378
TasI	AATT	2 cut(s)	68, 73
TatI	WGTACW	1 cut(s)	128
TauI	GCSGC	3 cut(s)	183, 276, 279
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	127
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.