Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007940

Physical Location & Seq

Genomic Coordinates Forward (+)

21898324 .. 21899431

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGACATGCTGATCTTCGACACGTGGCACTGGTGGACGCACACCGGAAGAACACAGCCATGGGACTACCTGGAAGAAAGGGGTAAATTGTACAACGATATGAACCGTCTGGTCGCATTTTACAAAGGAATGACAACTTGGGGCAGATGGGTCGACCAAAATGTCGATCCTTCCAAAACCAAGGTCTTCTTCCAAGGCATTTCTCCTACCCATTACGAGGGCAAGGAGTGGAATCAGCCAACAAGATCATGCGCAAGTGAAACGCAACCATTCTTTGAGAAAAAGTATCCAACAGGAGTACCTTTGTCTTGGGTTGTAGTCAACAAAGTGCTGGCTAGGATTAAGAAGCCAGTCTATCTTCTCGACATCACGCTTCTCTCACAAATCCGCAAAGATGCACACCCATCCAAGTACAGCGGCCACCACGGCGGCACGGACTGCAGCCACTGGTGCCTTCCCGGTCTGCCGGATACTTGGAATCAGCTCCTCTATGCTGCTCTATTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005911 GO:0008150 GO:0008374 GO:0009506 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

170

Amino Acids

19.8

Weight (kDa)

8.72

Isoelectric Point (pI)

27.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 165	7.7e-60	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31110 AT2G42570
fragaria_vesca	FvH4_6g27120 FvH4_6g27120 FvH4_6g27120
malus_domestica	MD09G1240100.v1.1 MD15G1118000.v1.1 MD16G1270900.v1.1 MD17G1232900.v1.1
prunus_persica	Prupe.3G123200_v2.0.a1 Prupe.3G123200_v2.0.a1
pyrus_communis	pycom09g15850 pycom17g23570 pycom17g23580
rosa_chinensis	RchiOBHm_Chr2g0129071
rosa_laevigata	RLG00000019051
rosa_multiflora	Rmu_sc0004255.1_g000011 Rmu_ssc0000449.1_g000014
rosa_roxburghii	Rroxscaffold_2G00114910
rosa_rugosa	Rorug02G0284000
rosa_samantha	Rh2AG336500 Rh2BG344600 Rh2DG361400
rosa_wichuraiana	Rw2G027290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
Acc16I	TGCGCA	1 cut(s)	253
AccB1I	GGYRCC	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	153
AciI	CCGC	3 cut(s)	388, 417, 429
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	418
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	3 cut(s)	92, 300, 413
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 173, 205
AluBI	AGCT	1 cut(s)	484
AluI	AGCT	1 cut(s)	484
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	441, 494
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	459
BaeI	ACNNNNGTAYC	2 cut(s)	282, 315
BanI	GGYRCC	1 cut(s)	450
BbrPI	CACGTG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	453, 481
BccI	CCATC	2 cut(s)	141, 412
BceAI	ACGGC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	1 cut(s)	71
BciVI	GTATCC	2 cut(s)	297, 463
BcnI	CCSGG	1 cut(s)	459
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	439
BfuI	GTATCC	2 cut(s)	297, 463
BglI	GCCNNNNNGGC	1 cut(s)	426
BisI	GCNGC	4 cut(s)	418, 430, 442, 495
BlsI	GCNGC	4 cut(s)	419, 431, 443, 496
Bme1390I	CCNGG	2 cut(s)	71, 459
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	71, 459
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	459
BsaAI	YACGTR	1 cut(s)	24
BsaJI	CCNNGG	4 cut(s)	59, 180, 193, 424
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	35, 350, 452
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	4 cut(s)	59, 180, 193, 424
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseNI	ACTGG	3 cut(s)	35, 350, 452
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	453, 481
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	45, 459, 467
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	420
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	3 cut(s)	12, 166, 245
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	3 cut(s)	388, 417, 429
BspANI	GGCC	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	35, 350, 452
BssECI	CCNNGG	4 cut(s)	59, 180, 193, 424
BssMI	GATC	3 cut(s)	12, 166, 245
BssT1I	CCWWGG	3 cut(s)	59, 180, 193
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	333
BstDSI	CCRYGG	2 cut(s)	59, 424
BstF5I	GGATG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	15, 169, 248
BstMBI	GATC	3 cut(s)	12, 166, 245
BstMWI	GCNNNNNNNGC	4 cut(s)	426, 438, 450, 503
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	69, 457
BstSFI	CTRYAG	1 cut(s)	439
BstV1I	GCAGC	2 cut(s)	453, 481
BstV2I	GAAGAC	1 cut(s)	178
BsuI	GTATCC	2 cut(s)	297, 463
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	2 cut(s)	59, 424
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	28, 445
Cac8I	GCNNGC	1 cut(s)	333
CaiI	CAGNNNCTG	1 cut(s)	447
CfoI	GCGC	1 cut(s)	254
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	91, 299, 412
CviAII	CATG	3 cut(s)	7, 60, 249
CviJI	RGCY	7 cut(s)	58, 238, 335, 349, 420, 444, 484
CviKI_1	RGCY	7 cut(s)	58, 238, 335, 349, 420, 444, 484
CviQI	GTAC	3 cut(s)	91, 299, 412
DpnI	GATC	3 cut(s)	14, 168, 247
DpnII	GATC	3 cut(s)	12, 166, 245
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	59, 180, 193
Eco72I	CACGTG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	3 cut(s)	59, 180, 193
ErhI	CCWWGG	3 cut(s)	59, 180, 193
FaeI	CATG	3 cut(s)	10, 63, 252
FaiI	YATR	5 cut(s)	8, 61, 101, 250, 492
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	6, 59, 248
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	418, 430, 442, 495
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	4 cut(s)	418, 430, 442, 495
FspBI	CTAG	1 cut(s)	336
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	4 cut(s)	418, 430, 442, 495
HaeIII	GGCC	1 cut(s)	420
HapII	CCGG	3 cut(s)	45, 459, 467
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	10, 63, 252
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	2 cut(s)	154, 322
HindII	GTYRAC	2 cut(s)	154, 322
HinfI	GANTC	2 cut(s)	232, 478
HpaII	CCGG	3 cut(s)	45, 459, 467
Hpy166II	GTNNAC	3 cut(s)	36, 154, 322
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	3 cut(s)	36, 154, 322
HpyAV	CCTTC	2 cut(s)	180, 464
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	398, 441
HpyF10VI	GCNNNNNNNGC	4 cut(s)	426, 438, 450, 503
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	10, 63, 252
HspAI	GCGC	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	12, 166, 245
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	2 cut(s)	453, 481
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	23
MalI	GATC	3 cut(s)	14, 168, 247
MboI	GATC	3 cut(s)	12, 166, 245
MboII	GAAGA	6 cut(s)	7, 60, 86, 178, 181, 350
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	211, 497
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	3 cut(s)	45, 459, 467
MspR9I	CCNGG	2 cut(s)	71, 459
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	4 cut(s)	426, 438, 450, 503
NciI	CCSGG	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	3 cut(s)	12, 166, 245
NlaIII	CATG	3 cut(s)	10, 63, 252
NlaIV	GGNNCC	1 cut(s)	452
NsbI	TGCGCA	1 cut(s)	253
NspI	RCATGY	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	232, 478
PkrI	GCNGC	4 cut(s)	419, 431, 443, 496
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	69
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	447
RsaI	GTAC	3 cut(s)	92, 300, 413
RsaNI	GTAC	3 cut(s)	91, 299, 412
RseI	CAYNNNNRTG	1 cut(s)	58
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	4 cut(s)	418, 430, 442, 495
Sau3AI	GATC	3 cut(s)	12, 166, 245
ScrFI	CCNGG	2 cut(s)	71, 459
SetI	ASST	5 cut(s)	26, 72, 186, 304, 486
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	388, 417, 429
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	69, 457
StyI	CCWWGG	3 cut(s)	59, 180, 193
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	18, 153, 165, 363
TasI	AATT	1 cut(s)	86
TatI	WGTACW	2 cut(s)	90, 411
TauI	GCSGC	2 cut(s)	420, 432
TfiI	GAWTC	2 cut(s)	232, 478
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	35, 452
TseI	GCWGC	2 cut(s)	441, 494
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	35, 452
XceI	RCATGY	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.