pycom17g23970

VQ motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0008509
Physical Location & Seq
Forward (+)
22217163 .. 22217735
573 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 573 bp
ATGGAACCATCGGGATCTTATTCCTCTTCCTCTTCAGCCTCCTCCACCCCCAAGTACTTGTCCCAAACCATCCAACCAACAAAGGGTTCAACTTCAAACTCAAAGCAGCTTCCCCATCACCATTCATCACTCCACTCGGTTCAAAAATCTTCGTCGAAGCCATGGAAGAAGCCTGCGGTTGCACCACTCCCACCAACCCCACCAAGAATCTACAAAGTTGACCCCATTAACTTCAGGGAGCTTGTCCAGCGCCTCACCTGCGCGCCGGAGTTTATGGAGACTCGGTCTCTCCAGAGCGTAGCGCCTCCACCGATCGATATCCGTGTGTCTTCTGTACCAAATCATGTCCATTCTTCACCAGAAATTGGCTCTCCATTTTCTGTTATGTACAAGGACTTGTTGGATACTTTGGAGCTGAGTCCAATGCCTCGCCATCAGAAGGTGCATGATAGCACAGTGGACTCTTCAGAGACTGAATTGGCAGTCCCCGTCTTCCCATCATCGGTTTTCCTTCCCTCTGCTCAGCCCAGGGACCCTGTCCAGTATCACCCTCGAATAGTATTTTTGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

191

Amino Acids

21.01

Weight (kDa)

9.27

Isoelectric Point (pI)

65.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 66 - 86 3.2e-08 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 365
AccII CGCG 1 cut(s) 263
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 22
AcuI CTGAAG 3 cut(s) 18, 217, 450
AfaI GTAC 3 cut(s) 56, 336, 389
AfiI CCNNNNNNNGG 4 cut(s) 83, 365, 439, 502
AgsI TTSAA 3 cut(s) 90, 96, 143
AjnI CCWGG 1 cut(s) 527
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 3 cut(s) 109, 241, 415
AluI AGCT 3 cut(s) 109, 241, 415
Alw26I GTCTC 3 cut(s) 272, 291, 464
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 106
AspLEI GCGC 4 cut(s) 252, 263, 265, 304
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 4 cut(s) 110, 247, 348, 539
AvaII GGWCC 1 cut(s) 532
BbsI GAAGAC 2 cut(s) 321, 484
BbvI GCAGC 1 cut(s) 118
BccI CCATC 5 cut(s) 16, 77, 123, 441, 505
BciT130I CCWGG 1 cut(s) 529
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 3 cut(s) 272, 291, 464
BfoI RGCGCY 2 cut(s) 253, 305
BfuAI ACCTGC 1 cut(s) 266
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 1 cut(s) 107
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 108
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 3 cut(s) 6, 533, 534
BmrFI CCNGG 1 cut(s) 529
BpiI GAAGAC 2 cut(s) 321, 484
BpmI CTGGAG 1 cut(s) 275
Bpu1102I GCTNAGC 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 161, 527, 528
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 365, 439, 502
Bse1I ACTGG 1 cut(s) 541
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 529
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 161, 527, 528
BseGI GGATG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 4 cut(s) 83, 365, 439, 502
BseMII CTCAG 2 cut(s) 407, 536
BseNI ACTGG 1 cut(s) 541
BsePI GCGCGC 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 315
BshVI ATCGAT 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 3 cut(s) 46, 470, 545
BslI CCNNNNNNNGG 4 cut(s) 83, 365, 439, 502
BsmAI GTCTC 3 cut(s) 272, 291, 464
BsmFI GGGAC 3 cut(s) 46, 470, 545
Bso31I GGTCTC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 2 cut(s) 14, 312
Bsp1720I GCTNAGC 1 cut(s) 522
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 2 cut(s) 408, 535
BspDI ATCGAT 1 cut(s) 315
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 6, 533, 534
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 291
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 161, 527, 528
BssHII GCGCGC 1 cut(s) 261
BssMI GATC 2 cut(s) 14, 312
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 3 cut(s) 31, 37, 469
BstAUI TGTACA 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 174, 263
BstDEI CTNAG 2 cut(s) 416, 522
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 263
BstH2I RGCGCY 2 cut(s) 253, 305
BstHHI GCGC 4 cut(s) 252, 263, 265, 304
BstKTI GATC 2 cut(s) 17, 315
BstMAI GTCTC 3 cut(s) 272, 291, 464
BstMBI GATC 2 cut(s) 14, 312
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 2 cut(s) 247, 258
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 527
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 2 cut(s) 321, 484
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 315
BsuI GTATCC 1 cut(s) 397
BsuTUI ATCGAT 1 cut(s) 315
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 462
BveI ACCTGC 1 cut(s) 266
Cac8I GCNNGC 2 cut(s) 174, 263
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 4 cut(s) 252, 263, 265, 304
Cfr13I GGNCC 1 cut(s) 532
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 3 cut(s) 55, 335, 388
CviAII CATG 3 cut(s) 162, 344, 446
CviJI RGCY 8 cut(s) 38, 109, 160, 172, 241, 369, 415, 526
CviKI_1 RGCY 8 cut(s) 38, 109, 160, 172, 241, 369, 415, 526
CviQI GTAC 3 cut(s) 55, 335, 388
DdeI CTNAG 2 cut(s) 416, 522
DpnI GATC 2 cut(s) 16, 314
DpnII GATC 2 cut(s) 14, 312
Eam1104I CTCTTC 3 cut(s) 31, 37, 469
EarI CTCTTC 3 cut(s) 31, 37, 469
Eco130I CCWWGG 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 291
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 532
Eco57I CTGAAG 3 cut(s) 18, 217, 450
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 527
EcoRV GATATC 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 165, 347, 449
FaiI YATR 5 cut(s) 163, 275, 345, 386, 447
FaqI GGGAC 3 cut(s) 46, 470, 545
FatI CATG 3 cut(s) 161, 343, 445
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 4 cut(s) 251, 262, 264, 303
GluI GCNGC 1 cut(s) 107
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 2 cut(s) 253, 305
HapII CCGG 1 cut(s) 266
HhaI GCGC 4 cut(s) 252, 263, 265, 304
Hin1II CATG 3 cut(s) 165, 347, 449
Hin6I GCGC 4 cut(s) 250, 261, 263, 302
HinP1I GCGC 4 cut(s) 250, 261, 263, 302
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 4 cut(s) 207, 280, 418, 461
HpaII CCGG 1 cut(s) 266
HphI GGTGA 4 cut(s) 110, 247, 348, 539
Hpy166II GTNNAC 2 cut(s) 220, 460
Hpy188I TCNGA 2 cut(s) 438, 469
Hpy188III TCNNGA 2 cut(s) 12, 292
Hpy8I GTNNAC 2 cut(s) 220, 460
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 433, 521
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4V TGCA 2 cut(s) 182, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 258
HpyF3I CTNAG 2 cut(s) 416, 522
Hsp92II CATG 3 cut(s) 165, 347, 449
HspAI GCGC 4 cut(s) 250, 261, 263, 302
KflI GGGWCCC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 14, 312
LmnI GCTCC 2 cut(s) 238, 412
Lsp1109I GCAGC 1 cut(s) 118
MalI GATC 2 cut(s) 16, 314
MboI GATC 2 cut(s) 14, 312
MboII GAAGA 8 cut(s) 18, 24, 141, 178, 321, 345, 456, 484
MflI RGATCY 1 cut(s) 14
MluCI AATT 2 cut(s) 363, 476
MlyI GAGTC 3 cut(s) 274, 427, 455
MmeI TCCRAC 2 cut(s) 97, 381
MnlI CCTC 9 cut(s) 34, 40, 49, 52, 263, 315, 438, 526, 561
MseI TTAA 1 cut(s) 228
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 529
MvaI CCWGG 1 cut(s) 529
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 247, 258
NcoI CCATGG 1 cut(s) 161
NdeII GATC 2 cut(s) 14, 312
NlaIII CATG 3 cut(s) 165, 347, 449
NlaIV GGNNCC 3 cut(s) 6, 533, 534
PaqCI CACCTGC 1 cut(s) 266
PasI CCCWGGG 1 cut(s) 528
PauI GCGCGC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 207
PflFI GACNNNGTC 2 cut(s) 283, 536
PflMI CCANNNNNTGG 1 cut(s) 365
PkrI GCNGC 1 cut(s) 108
Ple19I CGATCG 1 cut(s) 315
PleI GAGTC 3 cut(s) 274, 426, 455
PpsI GAGTC 3 cut(s) 274, 426, 455
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 1 cut(s) 527
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 3 cut(s) 6, 533, 534
PspPI GGNCC 1 cut(s) 532
PspPPI RGGWCCY 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 2 cut(s) 283, 536
PteI GCGCGC 1 cut(s) 261
PvuI CGATCG 1 cut(s) 315
RsaI GTAC 3 cut(s) 56, 336, 389
RsaNI GTAC 3 cut(s) 55, 335, 388
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 14, 312
Sau96I GGNCC 1 cut(s) 532
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 3 cut(s) 274, 427, 455
ScrFI CCNGG 1 cut(s) 529
SetI ASST 5 cut(s) 111, 243, 260, 417, 444
SinI GGWCC 1 cut(s) 532
Sse9I AATT 2 cut(s) 363, 476
SsiI CCGC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 457
TaqI TCGA 3 cut(s) 155, 315, 553
TaqII GACCGA 1 cut(s) 273
TasI AATT 2 cut(s) 363, 476
TatI WGTACW 2 cut(s) 54, 387
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 462
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 462
Tth111I GACNNNGTC 2 cut(s) 283, 536
Van91I CCANNNNNTGG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 532
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.