Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008226

Physical Location & Seq

Genomic Coordinates Forward (+)

22765671 .. 22766189

Gene Structure 519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTACAGAGCAGAACTTTCCAGAGGTTGTGGCTCGAAATAACTCCGTTGGACAAGATAAATGTTCCTATGAAAAATGGAATACGGTGTCTGATGGAGTAGCAGACTCCGACAACAAATCCTGTGGCACCTTCGACTGCAGCATCTGCTTAGACTCTGTGCAGGATCCAGTGGTCACCCTCTGTGGTCACCTCTACTGCTGGCCTTGCATATACAAGTGGCTTCAGTTCCAGAGCCCGTCTTCCGAAAACCAAGGTGAGCAGAAACTGCACCAGTGCCCTGTATGCAAAGCCGAAGTCTCCGAGTCCTCTCTAATCCCACTCTATGGCCGGGGACAAACAACAAAACCCCCGAAACCCTCGAAAGGCAAGGCTCCTCCTATTGGTATAGTGATTCCGAGAAGACCCTTTCGTCCTTGTGGGGTTGACACACCGCGATCATCACTTTCGGTACCCCATCCAGTCCATACGTTACTCCACAACTTCATTATCGGAGTTCTCGTTATGGTTCACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009611 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010243 GO:0010498 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0032527 GO:0032991 GO:0033036 GO:0033554 GO:0034613 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0042886 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051788 GO:0070647 GO:0070727 GO:0070887 GO:0071218 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071712 GO:0098796 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX

Protein Analysis

173

Amino Acids

18.95

Weight (kDa)

7.55

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	46 - 97	4.5e-08	Ring finger domain
zf-C3HC4_3	PF13920	46 - 102	8.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	47 - 96	6.1e-11	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	47 - 77	2e-09	RING-type zinc-finger
RING_XB3-XBAT31	PF24921	47 - 100	1.7e-09	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4_2	PF13923	47 - 76	9.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4	PF15227	47 - 96	3.5e-07	zinc finger of C3HC4-type, RING
zf-RING_5	PF14634	47 - 97	5e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03510 AT4G03510 AT4G03510 AT4G03510
fragaria_vesca	FvH4_6g26170
malus_domestica	MD09G1248700.v1.1 MD17G1241200.v1.1
prunus_persica	Prupe.3G137000_v2.0.a1
pyrus_communis	pycom09g16560 pycom17g24430 pycom17g24440 pycom17g24450
rosa_chinensis	RchiOBHm_Chr2g0126321
rosa_laevigata	RLG00000018901
rosa_multiflora	Rmu_ssc0000264.1_g000040
rosa_roxburghii	Rroxscaffold_2G00117240
rosa_rugosa	Rorug02G0262600 Rorug02G0262700
rosa_samantha	Rh2AG319500 Rh2BG327900 Rh2CG307800 Rh2DG347600
rosa_wichuraiana	Rw2G025890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	411
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	2 cut(s)	128, 451
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccII	CGCG	1 cut(s)	436
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	2 cut(s)	161, 174
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	326, 365, 383
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	161, 174
AlwNI	CAGNNNCTG	2 cut(s)	147, 268
AoxI	GGCC	2 cut(s)	203, 328
ApeKI	GCWGC	1 cut(s)	141
ArsI	GACNNNNNNTTYG	2 cut(s)	282, 314
Asp718I	GGTACC	1 cut(s)	451
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	169, 182, 269
BaeGI	GKGCMC	1 cut(s)	281
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	2 cut(s)	128, 451
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	234, 409
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	2 cut(s)	89, 465
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	304
BfmI	CTRYAG	2 cut(s)	6, 139
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	4 cut(s)	130, 168, 375, 453
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	2 cut(s)	234, 409
BpuMI	CCSGG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	253, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 365, 383
Bse1I	ACTGG	3 cut(s)	170, 274, 461
BseDI	CCNNGG	2 cut(s)	253, 331
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	3 cut(s)	326, 365, 383
BseNI	ACTGG	3 cut(s)	170, 274, 461
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	182, 254
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	205, 330
BshNI	GGYRCC	2 cut(s)	128, 451
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	3 cut(s)	326, 365, 383
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	205, 330
Bsp1286I	GDGCHC	2 cut(s)	239, 281
Bsp143I	GATC	2 cut(s)	166, 437
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	2 cut(s)	205, 330
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	4 cut(s)	130, 168, 375, 453
BspMAI	CTGCAG	1 cut(s)	143
BspPI	GGATC	2 cut(s)	161, 174
BspT107I	GGYRCC	2 cut(s)	128, 451
BsrI	ACTGG	3 cut(s)	170, 274, 461
BssECI	CCNNGG	2 cut(s)	253, 331
BssMI	GATC	2 cut(s)	166, 437
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	88
BstAPI	GCANNNNNTGC	2 cut(s)	147, 268
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	151
BstEII	GGTNACC	2 cut(s)	175, 188
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	169, 440
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	2 cut(s)	166, 437
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 207, 268, 285
BstPI	GGTNACC	2 cut(s)	175, 188
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	6, 139
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	2 cut(s)	234, 409
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	205, 330
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	2 cut(s)	177, 281
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	2 cut(s)	147, 268
Csp6I	GTAC	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviJI	RGCY	8 cut(s)	5, 35, 205, 223, 237, 293, 330, 374
CviKI_1	RGCY	8 cut(s)	5, 35, 205, 223, 237, 293, 330, 374
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	2 cut(s)	168, 439
DpnII	GATC	2 cut(s)	166, 437
DrdI	GACNNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	209
Eco91I	GGTNACC	2 cut(s)	175, 188
EcoO65I	GGTNACC	2 cut(s)	175, 188
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	253
FaiI	YATR	8 cut(s)	72, 212, 214, 286, 327, 389, 468, 506
FaqI	GGGAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	205, 330
HapII	CCGG	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	4 cut(s)	107, 155, 305, 394
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	3 cut(s)	169, 182, 269
Hpy166II	GTNNAC	2 cut(s)	427, 511
Hpy188I	TCNGA	6 cut(s)	94, 112, 247, 304, 399, 494
Hpy188III	TCNNGA	2 cut(s)	23, 232
Hpy8I	GTNNAC	2 cut(s)	427, 511
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	5 cut(s)	141, 163, 210, 271, 288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 207, 268, 285
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	470
KpnI	GGTACC	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	166, 437
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	153
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	3 cut(s)	175, 188, 471
MalI	GATC	2 cut(s)	168, 439
MboI	GATC	2 cut(s)	166, 437
MboII	GAAGA	2 cut(s)	234, 414
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	239, 281
MlyI	GAGTC	3 cut(s)	101, 149, 314
MmeI	TCCRAC	2 cut(s)	31, 135
MnlI	CCTC	6 cut(s)	19, 191, 203, 319, 370, 387
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	4 cut(s)	147, 207, 268, 285
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	2 cut(s)	166, 437
NlaIV	GGNNCC	4 cut(s)	130, 168, 375, 453
NmuCI	GTSAC	2 cut(s)	175, 188
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	143
PleI	GAGTC	3 cut(s)	101, 149, 313
PpsI	GAGTC	3 cut(s)	101, 149, 313
PspEI	GGTNACC	2 cut(s)	175, 188
PspN4I	GGNNCC	4 cut(s)	130, 168, 375, 453
PstI	CTGCAG	1 cut(s)	143
PstNI	CAGNNNCTG	2 cut(s)	147, 268
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	2 cut(s)	166, 437
SchI	GAGTC	3 cut(s)	101, 149, 314
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	2 cut(s)	239, 281
SetI	ASST	5 cut(s)	30, 134, 195, 259, 473
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	2 cut(s)	6, 139
SsiI	CCGC	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	3 cut(s)	37, 135, 362
TfiI	GAWTC	1 cut(s)	394
TscAI	CASTG	2 cut(s)	177, 281
TseFI	GTSAC	2 cut(s)	175, 188
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	2 cut(s)	175, 188
TspDTI	ATGAA	2 cut(s)	87, 475
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	177, 281
Van91I	CCANNNNNTGG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.