Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010864

Physical Location & Seq

Genomic Coordinates Forward (+)

23107568 .. 23109364

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGGAGTCCTACCTGAACCCGTTCCTGGACGAGACGACGTTCTATAACCGCATTGTGCTCGGCAGCCTCGTGCCCAATAGAGTGTGGGACCCACTCCCCCACTTCTTCCAGACGTGGCTGCGCAACTACGTCGGAGGGACCTTGCTCTACCTCGTCTCCGGCTTCCTCTGGTGCCTCTACATTTATTACTTGAAACGCAACACTTACATCCCCAAAGATGCCGTTCCCTCGAACAAAGCCATGCTTTTGCAAATATATGTTGCCATGAAGGCCATGCCTTGGTACTGTGCTCTTCCAACTGTTTCTGAGTACATGGTTGAAAATGGCTGGGCAAAGTGCTTTGCAAGAATAAGTGATGTGGGTTGGCCTGCTTACCTCTTGTATTTAGCAATTTATCTTGTATTCGTGGAGTTCGGAATATATTGGATGCACAGAGAGTTGCATGACATAAAACCTCTGTATAAATATCTTCATGCAACCCATCATATCTACAACAAGCAGAACACCCTCTCTCCGTTTGCTGTTTTGGTTTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000248 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016717 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0070704 GO:0071704 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

181

Amino Acids

21.36

Weight (kDa)

8.33

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	131 - 173	2.2e-07	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02580 AT3G02590 AT3G02590
fragaria_vesca	FvH4_2g26170
malus_domestica	MD09G1254800.v1.1 MD17G1247400.v1.1
prunus_persica	Prupe.3G144900_v2.0.a1
pyrus_communis	pycom09g17070 pycom17g24880
rosa_chinensis	RchiOBHm_Chr6g0294591
rosa_laevigata	RLG00000011856
rosa_multiflora	Rmu_sc0006264.1_g000012 Rmu_sc0007845.1_g000002
rosa_roxburghii	Rroxscaffold_7G00173180
rosa_rugosa	Rorug06G0246200
rosa_samantha	Rh6AG358500 Rh6BG365700 Rh6CG372300 Rh6DG359100
rosa_wichuraiana	Rw6G031280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	174
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	1 cut(s)	52
AfaI	GTAC	2 cut(s)	287, 314
AfiI	CCNNNNNNNGG	2 cut(s)	28, 282
AgsI	TTSAA	2 cut(s)	196, 323
AjiI	CACGTC	1 cut(s)	117
AjnI	CCWGG	1 cut(s)	27
Alw21I	GWGCWC	2 cut(s)	63, 295
Alw26I	GTCTC	2 cut(s)	29, 163
AoxI	GGCC	2 cut(s)	273, 368
ApeKI	GCWGC	2 cut(s)	66, 121
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	91, 141
AvaII	GGWCC	2 cut(s)	91, 141
BaeGI	GKGCMC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	174
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	63, 295
BbvI	GCAGC	2 cut(s)	78, 108
BccI	CCATC	1 cut(s)	492
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	4 cut(s)	43, 77, 115, 149
BciT130I	CCWGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	29, 163
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	67, 122
BlsI	GCNGC	2 cut(s)	68, 123
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	91, 141
BmgBI	CACGTC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	91, 141
BmiI	GGNNCC	4 cut(s)	92, 93, 142, 176
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	2 cut(s)	211, 420
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 499, 529
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 282
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	2 cut(s)	210, 435
BseLI	CCNNNNNNNGG	2 cut(s)	28, 282
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	78, 108
BseYI	CCCAGC	1 cut(s)	330
BshFI	GGCC	2 cut(s)	275, 370
BshNI	GGYRCC	1 cut(s)	174
BsiHKAI	GWGCWC	2 cut(s)	63, 295
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	104, 154
BslI	CCNNNNNNNGG	2 cut(s)	28, 282
BsmAI	GTCTC	2 cut(s)	29, 163
BsmBI	CGTCTC	2 cut(s)	29, 163
BsmFI	GGGAC	2 cut(s)	104, 154
BsnI	GGCC	2 cut(s)	275, 370
Bsp1286I	GDGCHC	3 cut(s)	63, 78, 295
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	275, 370
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	92, 93, 142, 176
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	290, 304
Bst6I	CTCTTC	1 cut(s)	300
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	309, 540
BstF5I	GGATG	2 cut(s)	210, 435
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	29, 163
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	78, 108
BsuRI	GGCC	2 cut(s)	275, 370
BtrI	CACGTC	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	210, 435
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	91, 141
Csp6I	GTAC	2 cut(s)	286, 313
CviAII	CATG	6 cut(s)	244, 268, 277, 316, 446, 476
CviJI	RGCY	7 cut(s)	69, 121, 165, 242, 275, 330, 370
CviKI_1	RGCY	7 cut(s)	69, 121, 165, 242, 275, 330, 370
CviQI	GTAC	2 cut(s)	286, 313
DdeI	CTNAG	2 cut(s)	309, 540
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	91, 141
EcoO109I	RGGNCCY	2 cut(s)	91, 141
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	281
ErhI	CCWWGG	1 cut(s)	281
Esp3I	CGTCTC	2 cut(s)	29, 163
FaeI	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	2 cut(s)	104, 154
FatI	CATG	6 cut(s)	243, 267, 276, 315, 445, 475
Fnu4HI	GCNGC	2 cut(s)	67, 122
FokI	GGATG	2 cut(s)	197, 442
Fsp4HI	GCNGC	2 cut(s)	67, 122
FspI	TGCGCA	1 cut(s)	125
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	67, 122
GsaI	CCCAGC	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	275, 370
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	137, 310, 419
Hpy188III	TCNNGA	1 cut(s)	112
Hpy99I	CGWCG	2 cut(s)	43, 137
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	290, 304
HpyCH4IV	ACGT	3 cut(s)	41, 116, 132
HpyCH4V	TGCA	5 cut(s)	253, 347, 433, 445, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	309, 540
HpySE526I	ACGT	3 cut(s)	41, 116, 132
Hsp92II	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
HspAI	GCGC	1 cut(s)	124
KflI	GGGWCCC	1 cut(s)	91
LguI	GCTCTTC	1 cut(s)	300
LpnPI	CCDG	8 cut(s)	14, 29, 41, 125, 157, 175, 316, 384
Lsp1109I	GCAGC	2 cut(s)	78, 108
LweI	GCATC	2 cut(s)	211, 420
MaeII	ACGT	3 cut(s)	41, 116, 132
MboII	GAAGA	3 cut(s)	100, 287, 464
MhlI	GDGCHC	3 cut(s)	63, 78, 295
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	115, 323
MnlI	CCTC	9 cut(s)	80, 131, 164, 179, 188, 241, 389, 468, 521
MroXI	GAANNNNTTC	1 cut(s)	23
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	272
NlaIII	CATG	6 cut(s)	247, 271, 280, 319, 449, 479
NlaIV	GGNNCC	4 cut(s)	92, 93, 142, 176
NmeAIII	GCCGAG	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	68, 123
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	2 cut(s)	91, 141
Psp5II	RGGWCCY	2 cut(s)	91, 141
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	4 cut(s)	92, 93, 142, 176
PspPI	GGNCC	2 cut(s)	91, 141
PspPPI	RGGWCCY	2 cut(s)	91, 141
RsaI	GTAC	2 cut(s)	287, 314
RsaNI	GTAC	2 cut(s)	286, 313
SapI	GCTCTTC	1 cut(s)	300
SatI	GCNGC	2 cut(s)	67, 122
Sau96I	GGNCC	2 cut(s)	91, 141
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	63, 78, 295
SetI	ASST	8 cut(s)	18, 44, 119, 135, 146, 156, 381, 460
SfaNI	GCATC	2 cut(s)	211, 420
SinI	GGWCC	2 cut(s)	91, 141
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	290, 304
TaiI	ACGT	3 cut(s)	44, 119, 135
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	393
TatI	WGTACW	1 cut(s)	312
TseI	GCWGC	2 cut(s)	66, 121
TspDTI	ATGAA	2 cut(s)	284, 464
TspGWI	ACGGA	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	91, 141
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.