Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005431

Physical Location & Seq

Genomic Coordinates Forward (+)

24329181 .. 24334954

Gene Structure 5774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2679 bp

ATGAGGCTGTCAGCAAACTTCTGGGGCATGCCAATAAAACTGGGAAAAGGAAATCTAACAATAGTCTGCGTCCATGTGATTCAATCGGAAAGGCTGTTTATATTTCAGCCTGAGAGTGAGCCAAAAAGAGACAAAGATGTCGATTCAAGAGTCAGAGGGAATATTTTGGAATCTGAGGGTTGTAGTAAAGATGCAAAGCGAAAGGTCTCTGCAGAAGAGAAAGTTGATGGGGAAAGCTTTGGATGCACTTCCACAAACATTAGGGAAGAACTGGATGACTCAGATTGGGAAGAGGGTTCAATACCCATTTCTAATTTCGCTGGTGATCATGAAGTGACTATTGAATTAAATGAGACGCCAGATTCTACAAGAAAGAAACGTATCCATCGGGCTTCTGCTGAAGATAAGGAACTGGCTGAGCTTGTTCATAGGGTTCATTTACTTTGTTTACTTGCACGGGGAAGGTTGATTGATAGAGCTTGTGATGATGCTCTTATTCAGGCAGCTTTACTTTCTCTGCTTCCACTACACGTGCTGAATACATCCAAGGTTGAAAACCGTACTACAAAGGATTTTAGTCCTCTAGTCTTCTGGTTTCAAAGTAACTTCCGTGTTCGAAGTACAAGTGTGAGCAGGCCATTTTCTTCGGGTCTGAAATTTGCCCTTGAAACTCATGAAGGAACTCAAGAAGAGATTGCTGCTTTGTCTGTGGCACTCTTCAGAGCATTAAATCTGACAACCCGGTTCGTCTCGGTTTTGGATGTTGCCTCTTTAAAACCAGAAGCTGGCAAGACTGAATATTCTAGTGAAGATGCAAGCAGATCGAGTAGGAGAATATTCAATTCTTCGACCCCAATGGTGGCTAGACAAAAGGTCTCTGTCTCTCCTGCCAAATCACTTTCATGTAATACGAGTGGCAATGTCTATGGAACTTCTCGGGCGTGTTCAAGCGAAAGTAAGGACCCCACAAGAAACAATACTCTTCCCACAAGCTCTGGTATTGCTTATGTGACGAATGATAAATTGTCAGATACTTCTGCAACACGATATGACATCTCTCAAGCAACCGTTAATGAGAAATCTCTGGGATCAAAGAGGAAAGGGGATCATGAGTTCGAAATGCAGTTGCAAATGGCTCTTTCTGCCACAGCAGTGCTGACTGCAGATAGAGAAATGGGTTCAGGTCAGAAAGACTTGAGTGGAAATTTTGCAAATTTCCCTGACCCGAAAAGAATGAAAAGAATTGTTTGTGAAGAATCACAAAACCCCTCCCAGAGTATCTCTACTGCGGTTGGCTCGAGAAAAGAAGGATCTCCTTTGTACTGGGCGGAAGTATACTGTCAGGGGAAGTGGGTGCATTTAGATGCTATCAATGGAATTATTGATGGAGAGCAGAAGGTTGAAGCCATAGCTGCTGCATGCAAAACGTCTTTGAGATATGCAGTTGCTTTTGCTGGGAATGGGGCGAAAGATGTGACTCGCAGGTACTGTCTGAAGTGGTATCAGATAGCTTCCCAACGAGTCAATTCAATATGGTGGGACGCAGTACTGGCACCCTTGAGAACTTTAGAGGTGAGAGCAACATGTGGCATAGTTAAGTTGGAGAAAGAAGGGAATGGTGCGACCATGGATTATCATCCAACTATGATTGATGCTTCCCGAAATTCTCTTGAGGATATGGAGTTGGAAACTAGGGCCTTAACTGAGCCTCTTCCAACTAATCAGCAGGCCTATAAAAACCATCAACTATATGCTATAGAAAAATGGCTTACAAGGGATCAGGTACTTCATCCGAATGGCCCTGTTTTGGGTTTTTGTTCTGGTCATCCAGTTTACCCTAGGACATGTGTGCAAACACTAAAGACAAGAGAAAGATGGCTGCGGGAGGGGCTACAAGTTAAAACCAATGAGCATCCTGTGAAGGAGTTGAAACGTTCTCCAAAAGTCCAAAAGGCACAGGTACCTGAATCTGAGGATTTTGTTGGGGGTAATTCAAAACGAACTCTTGAACTTTATGGGAAGTGGCAACTTGAACCATTGCATCTGCCTCATGCTGTTAATGGGATAGTGCCAAAGAATGATTATGGTAATGTAGAAGTATGGTCTGAGAAGTGCCTTCCGCCAGGGACTGTGCATTTGAGGTTGCCGAGGCTGTTTTATGTTGCCAAGAGACTGGAAATTGATTATGCTCCCGCCATGGTTGGTTTTGAATATAAAAACGGTCAATCGTTTCCTGTCTTTGATGGTATAGTAGTCTGCTCTGAGTTCAAGGATGCAATATTGGAGGCATATGCAGAGGAAGAGGAAAGAAGAGACGCTGCAGAAAAGAAAAGAAACGAAGGGCAGGCTATTTCTCGGTGGTATCAGCTTCTCTGTTCGATTGTAACTCGACAAAGGTTAAACAACCGCTATGGGGACTCCCCCTCTTCTGTAGCATCAGTTGACGCCAACAAGGTGAATAGCAACATAGACGTACAGGTTGATGATCGTCAGAATGATAAGCAATCTCTTGCATGCCGGCAAAATGTGCCTGAAAAGAGGACAGCTGATCCATCAGCTTCCATGCCTGAAGATCACGAGCATGTCTTCTTGACCGAAAACCAGAGTTTTGATGAGGGAAACTTGGTGCTGACAAAGAGGTGTCAATGTGGATTCTCAGTGCAAGTTGAACAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000111 GO:0000217 GO:0000404 GO:0000405 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007346 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010564 GO:0016020 GO:0016043 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0071942 GO:0071944 GO:0090304 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901987 GO:1901990 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

BHD_1 BHD_2 BHD_3 Rad4 Transglut_core

Protein Analysis

893

Amino Acids

99.84

Weight (kDa)

6.71

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad4	PF03835	421 - 562	2e-18	Rad4 transglutaminase-like domain
BHD_1	PF10403	568 - 617	1e-16	Rad4 beta-hairpin domain 1
BHD_2	PF10404	621 - 683	7.3e-12	Rad4 beta-hairpin domain 2
BHD_3	PF10405	690 - 763	3.1e-27	Rad4 beta-hairpin domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16630 AT5G16630 AT5G16630
fragaria_vesca	FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770
malus_domestica	MD17G1258300.v1.1
prunus_persica	Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1
pyrus_communis	pycom17g26020
rosa_chinensis	RchiOBHm_Chr3g0493161
rosa_laevigata	RLG00000022722 RLG00000022723 RLG00000022724
rosa_multiflora	Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391760
rosa_rugosa	Rorug03G0259500 Rorug03G0259600 Rorug03G0259700
rosa_samantha	Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000
rosa_wichuraiana	Rw3G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	1473
Acc65I	GGTACC	1 cut(s)	1960
AccB1I	GGYRCC	2 cut(s)	1552, 1960
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccI	GTMKAC	1 cut(s)	1335
AciI	CCGC	6 cut(s)	1289, 1328, 1882, 2120, 2193, 2407
AclI	AACGTT	1 cut(s)	1933
AclWI	GGATC	5 cut(s)	1096, 1113, 1318, 1785, 2543
AcsI	RAATTY	4 cut(s)	656, 1204, 1213, 1663
AcuI	CTGAAG	4 cut(s)	420, 703, 1514, 2589
AcvI	CACGTG	1 cut(s)	532
AcyI	GRCGYC	2 cut(s)	356, 2445
AfaI	GTAC	8 cut(s)	562, 622, 1322, 1487, 1548, 1785, 1962, 2475
AfiI	CCNNNNNNNGG	5 cut(s)	785, 859, 1807, 1808, 2413
AflIII	ACRYGT	3 cut(s)	529, 1583, 1844
AhdI	GACNNNNNGTC	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	2122
AleI	CACNNNNGTG	1 cut(s)	1151
AloI	GAACNNNNNNTCC	2 cut(s)	1097, 1129
Alw26I	GTCTC	8 cut(s)	123, 211, 347, 754, 880, 886, 2164, 2307
AlwI	GGATC	5 cut(s)	1096, 1113, 1318, 1785, 2543
AlwNI	CAGNNNCTG	3 cut(s)	785, 1488, 2129
Ama87I	CYCGRG	2 cut(s)	936, 1297
AoxI	GGCC	4 cut(s)	635, 1695, 1728, 1798
ApeKI	GCWGC	6 cut(s)	503, 698, 1412, 1415, 1879, 2318
ApoI	RAATTY	4 cut(s)	656, 1204, 1213, 1663
ArsI	GACNNNNNNTTYG	2 cut(s)	2119, 2151
Asp718I	GGTACC	1 cut(s)	1960
AspA2I	CCTAGG	1 cut(s)	1838
AspS9I	GGNCC	3 cut(s)	961, 1695, 1799
AsuC2I	CCSGG	1 cut(s)	742
AsuHPI	GGTGA	3 cut(s)	335, 1585, 2467
AsuII	TTCGAA	2 cut(s)	616, 1116
AvaI	CYCGRG	2 cut(s)	936, 1297
AvaII	GGWCC	1 cut(s)	961
AvrII	CCTAGG	1 cut(s)	1838
BanI	GGYRCC	2 cut(s)	1552, 1960
BauI	CACGAG	1 cut(s)	2576
BbrPI	CACGTG	1 cut(s)	532
BbsI	GAAGAC	2 cut(s)	580, 2578
BbvI	GCAGC	6 cut(s)	515, 685, 1399, 1402, 1866, 2305
BccI	CCATC	7 cut(s)	221, 393, 1379, 1749, 1869, 2237, 2560
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	1 cut(s)	2124
BciVI	GTATCC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	8 cut(s)	123, 211, 347, 754, 880, 886, 2164, 2307
BfaI	CTAG	5 cut(s)	584, 804, 864, 1692, 1839
BfmI	CTRYAG	6 cut(s)	210, 1161, 1755, 2319, 2430, 2675
BfuAI	ACCTGC	1 cut(s)	1473
BfuI	GTATCC	1 cut(s)	392
BisI	GCNGC	6 cut(s)	504, 699, 1413, 1416, 1880, 2319
BlnI	CCTAGG	1 cut(s)	1838
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	6 cut(s)	505, 700, 1414, 1417, 1881, 2320
BmcAI	AGTACT	1 cut(s)	1548
Bme1390I	CCNGG	2 cut(s)	742, 2124
Bme18I	GGWCC	1 cut(s)	961
BmeRI	GACNNNNNGTC	1 cut(s)	872
BmeT110I	CYCGRG	2 cut(s)	936, 1297
BmgT120I	GGNCC	3 cut(s)	961, 1695, 1799
BmiI	GGNNCC	3 cut(s)	963, 1554, 1962
BmrFI	CCNGG	2 cut(s)	742, 2124
BmrI	ACTGGG	2 cut(s)	50, 1333
BmuI	ACTGGG	2 cut(s)	50, 1333
BpiI	GAAGAC	2 cut(s)	580, 2578
Bpu1102I	GCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	2 cut(s)	616, 1116
BpuEI	CTTGAG	5 cut(s)	669, 1044, 1216, 1579, 1691
BpuMI	CCSGG	1 cut(s)	742
BsaAI	YACGTR	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	1635
BsaHI	GRCGYC	2 cut(s)	356, 2445
BsaI	GGTCTC	2 cut(s)	211, 880
BsaJI	CCNNGG	6 cut(s)	546, 1626, 1838, 2123, 2147, 2196
Bsc4I	CCNNNNNNNGG	5 cut(s)	785, 859, 1807, 1808, 2413
Bse118I	RCCGGY	1 cut(s)	2517
Bse1I	ACTGG	7 cut(s)	45, 276, 417, 1328, 1554, 1829, 2178
Bse3DI	GCAATG	2 cut(s)	925, 2036
Bse8I	GATNNNNATC	1 cut(s)	1635
BseBI	CCWGG	1 cut(s)	2124
BseDI	CCNNGG	6 cut(s)	546, 1626, 1838, 2123, 2147, 2196
BseGI	GGATG	9 cut(s)	248, 280, 542, 766, 1636, 1789, 1825, 1912, 2278
BseJI	GATNNNNATC	1 cut(s)	1635
BseLI	CCNNNNNNNGG	5 cut(s)	785, 859, 1807, 1808, 2413
BseMI	GCAATG	2 cut(s)	925, 2036
BseMII	CTCAG	9 cut(s)	102, 165, 294, 408, 1695, 1962, 2097, 2253, 2670
BseNI	ACTGG	7 cut(s)	45, 276, 417, 1328, 1554, 1829, 2178
BseXI	GCAGC	6 cut(s)	515, 685, 1399, 1402, 1866, 2305
BseYI	CCCAGC	1 cut(s)	1454
BshFI	GGCC	4 cut(s)	637, 1697, 1730, 1800
BshNI	GGYRCC	2 cut(s)	1552, 1960
BsiHKCI	CYCGRG	2 cut(s)	936, 1297
BsiSI	CCGG	2 cut(s)	742, 2518
BslFI	GGGAC	3 cut(s)	1553, 2140, 2429
BslI	CCNNNNNNNGG	5 cut(s)	785, 859, 1807, 1808, 2413
BsmAI	GTCTC	8 cut(s)	123, 211, 347, 754, 880, 886, 2164, 2307
BsmBI	CGTCTC	3 cut(s)	347, 754, 2307
BsmFI	GGGAC	3 cut(s)	1553, 2140, 2429
BsnI	GGCC	4 cut(s)	637, 1697, 1730, 1800
Bso31I	GGTCTC	2 cut(s)	211, 880
BsoBI	CYCGRG	2 cut(s)	936, 1297
Bsp119I	TTCGAA	2 cut(s)	616, 1116
Bsp143I	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
Bsp1720I	GCTNAGC	1 cut(s)	417
Bsp19I	CCATGG	2 cut(s)	1626, 2196
BspACI	CCGC	6 cut(s)	1289, 1328, 1882, 2120, 2193, 2407
BspANI	GGCC	4 cut(s)	637, 1697, 1730, 1800
BspCNI	CTCAG	9 cut(s)	103, 166, 293, 409, 1696, 1963, 2098, 2254, 2669
BspHI	TCATGA	3 cut(s)	328, 673, 1108
BspLI	GGNNCC	3 cut(s)	963, 1554, 1962
BspMAI	CTGCAG	3 cut(s)	214, 1165, 2323
BspMI	ACCTGC	1 cut(s)	1473
BspPI	GGATC	5 cut(s)	1096, 1113, 1318, 1785, 2543
BspT104I	TTCGAA	2 cut(s)	616, 1116
BspT107I	GGYRCC	2 cut(s)	1552, 1960
BspTNI	GGTCTC	2 cut(s)	211, 880
BsrDI	GCAATG	2 cut(s)	925, 2036
BsrFI	RCCGGY	1 cut(s)	2517
BsrI	ACTGG	7 cut(s)	45, 276, 417, 1328, 1554, 1829, 2178
BssAI	RCCGGY	1 cut(s)	2517
BssECI	CCNNGG	6 cut(s)	546, 1626, 1838, 2123, 2147, 2196
BssMI	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
BssNAI	GTATAC	1 cut(s)	1336
BssNI	GRCGYC	2 cut(s)	356, 2445
BssSI	CACGAG	1 cut(s)	2576
BssT1I	CCWWGG	4 cut(s)	546, 1626, 1838, 2196
Bst1107I	GTATAC	1 cut(s)	1336
Bst2BI	CACGAG	1 cut(s)	2576
Bst2UI	CCWGG	1 cut(s)	2124
Bst4CI	ACNGT	7 cut(s)	560, 1069, 1340, 1490, 2131, 2222, 2676
Bst6I	CTCTTC	9 cut(s)	210, 285, 684, 722, 987, 1716, 2295, 2305, 2431
BstACI	GRCGYC	2 cut(s)	356, 2445
BstAPI	GCANNNNNTGC	1 cut(s)	2527
BstBAI	YACGTR	1 cut(s)	532
BstBI	TTCGAA	2 cut(s)	616, 1116
BstC8I	GCNNGC	9 cut(s)	29, 635, 787, 817, 1420, 1728, 2346, 2515, 2519
BstDEI	CTNAG	9 cut(s)	111, 174, 280, 417, 1704, 1971, 2106, 2262, 2656
BstDSI	CCRYGG	2 cut(s)	1626, 2196
BstF5I	GGATG	9 cut(s)	248, 280, 542, 766, 1636, 1789, 1825, 1912, 2278
BstKTI	GATC	9 cut(s)	328, 824, 1091, 1108, 1313, 1780, 2488, 2551, 2575
BstMAI	GTCTC	8 cut(s)	123, 211, 347, 754, 880, 886, 2164, 2307
BstMBI	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
BstMWI	GCNNNNNNNGC	6 cut(s)	243, 1142, 1412, 1550, 1888, 2527
BstNI	CCWGG	1 cut(s)	2124
BstNSI	RCATGY	6 cut(s)	31, 1422, 1587, 1848, 2517, 2585
BstSCI	CCNGG	2 cut(s)	740, 2122
BstSFI	CTRYAG	6 cut(s)	210, 1161, 1755, 2319, 2430, 2675
BstV1I	GCAGC	6 cut(s)	515, 685, 1399, 1402, 1866, 2305
BstV2I	GAAGAC	2 cut(s)	580, 2578
BstX2I	RGATCY	1 cut(s)	1310
BstXI	CCANNNNNNTGG	1 cut(s)	2173
BstYI	RGATCY	1 cut(s)	1310
BstZ17I	GTATAC	1 cut(s)	1336
BsuI	GTATCC	1 cut(s)	392
BsuRI	GGCC	4 cut(s)	637, 1697, 1730, 1800
BtgI	CCRYGG	2 cut(s)	1626, 2196
BtsCI	GGATG	9 cut(s)	248, 280, 542, 766, 1636, 1789, 1825, 1912, 2278
BtsI	GCAGTG	1 cut(s)	1158
BtsIMutI	CAGTG	2 cut(s)	1158, 2664
BveI	ACCTGC	1 cut(s)	1473
Cac8I	GCNNGC	9 cut(s)	29, 635, 787, 817, 1420, 1728, 2346, 2515, 2519
CaiI	CAGNNNCTG	3 cut(s)	785, 1488, 2129
CciI	TCATGA	3 cut(s)	328, 673, 1108
Cfr10I	RCCGGY	1 cut(s)	2517
Cfr13I	GGNCC	3 cut(s)	961, 1695, 1799
CseI	GACGC	5 cut(s)	58, 364, 1550, 2324, 2453
Csp6I	GTAC	8 cut(s)	561, 621, 1321, 1486, 1547, 1784, 1961, 2474
CviQI	GTAC	8 cut(s)	561, 621, 1321, 1486, 1547, 1784, 1961, 2474
DdeI	CTNAG	9 cut(s)	111, 174, 280, 417, 1704, 1971, 2106, 2262, 2656
DpnI	GATC	9 cut(s)	327, 823, 1090, 1107, 1312, 1779, 2487, 2550, 2574
DpnII	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
DraI	TTTAAA	1 cut(s)	774
DrdI	GACNNNNNNGTC	1 cut(s)	137
DriI	GACNNNNNGTC	1 cut(s)	872
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	9 cut(s)	210, 285, 684, 722, 987, 1716, 2295, 2305, 2431
Eam1105I	GACNNNNNGTC	1 cut(s)	872
EarI	CTCTTC	9 cut(s)	210, 285, 684, 722, 987, 1716, 2295, 2305, 2431
EciI	GGCGGA	2 cut(s)	1343, 2109
Eco130I	CCWWGG	4 cut(s)	546, 1626, 1838, 2196
Eco147I	AGGCCT	1 cut(s)	1730
Eco31I	GGTCTC	2 cut(s)	211, 880
Eco47I	GGWCC	1 cut(s)	961
Eco57I	CTGAAG	4 cut(s)	420, 703, 1514, 2589
Eco72I	CACGTG	1 cut(s)	532
Eco88I	CYCGRG	2 cut(s)	936, 1297
EcoO109I	RGGNCCY	2 cut(s)	961, 1695
EcoRII	CCWGG	1 cut(s)	2122
EcoT14I	CCWWGG	4 cut(s)	546, 1626, 1838, 2196
ErhI	CCWWGG	4 cut(s)	546, 1626, 1838, 2196
Esp3I	CGTCTC	3 cut(s)	347, 754, 2307
FaqI	GGGAC	3 cut(s)	1553, 2140, 2429
FauI	CCCGC	2 cut(s)	1875, 2200
FauNDI	CATATG	1 cut(s)	2290
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	1335
Fnu4HI	GCNGC	6 cut(s)	504, 699, 1413, 1416, 1880, 2319
FokI	GGATG	9 cut(s)	255, 287, 529, 773, 1623, 1776, 1812, 1899, 2285
Fsp4HI	GCNGC	6 cut(s)	504, 699, 1413, 1416, 1880, 2319
FspBI	CTAG	5 cut(s)	584, 804, 864, 1692, 1839
GluI	GCNGC	6 cut(s)	504, 699, 1413, 1416, 1880, 2319
GsaI	CCCAGC	1 cut(s)	1458
HaeIII	GGCC	4 cut(s)	637, 1697, 1730, 1800
HapII	CCGG	2 cut(s)	742, 2518
HgaI	GACGC	5 cut(s)	58, 364, 1550, 2324, 2453
Hin1I	GRCGYC	2 cut(s)	356, 2445
HincII	GTYRAC	1 cut(s)	2443
HindII	GTYRAC	1 cut(s)	2443
HindIII	AAGCTT	1 cut(s)	235
HpaII	CCGG	2 cut(s)	742, 2518
HphI	GGTGA	3 cut(s)	335, 1585, 2467
Hpy166II	GTNNAC	4 cut(s)	449, 1336, 1834, 2443
Hpy8I	GTNNAC	4 cut(s)	449, 1336, 1834, 2443
HpyAV	CCTTC	8 cut(s)	456, 671, 1301, 1390, 1604, 1915, 2126, 2333
HpyCH4III	ACNGT	7 cut(s)	560, 1069, 1340, 1490, 2131, 2222, 2676
HpyCH4IV	ACGT	5 cut(s)	379, 531, 1427, 1933, 2472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	243, 1142, 1412, 1550, 1888, 2527
HpyF3I	CTNAG	9 cut(s)	111, 174, 280, 417, 1704, 1971, 2106, 2262, 2656
HpySE526I	ACGT	5 cut(s)	379, 531, 1427, 1933, 2472
Hsp92I	GRCGYC	2 cut(s)	356, 2445
KpnI	GGTACC	1 cut(s)	1964
KroI	GCCGGC	1 cut(s)	2517
KroNI	GCCGGC	1 cut(s)	2519
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
LmnI	GCTCC	1 cut(s)	2194
Lsp1109I	GCAGC	6 cut(s)	515, 685, 1399, 1402, 1866, 2305
MaeI	CTAG	5 cut(s)	584, 804, 864, 1692, 1839
MaeII	ACGT	5 cut(s)	379, 531, 1427, 1933, 2472
MaeIII	GTNAC	5 cut(s)	334, 602, 1009, 1474, 2383
MalI	GATC	9 cut(s)	327, 823, 1090, 1107, 1312, 1779, 2487, 2550, 2574
MboI	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
MflI	RGATCY	1 cut(s)	1310
MlyI	GAGTC	5 cut(s)	159, 272, 1471, 1530, 2411
MmeI	TCCRAC	4 cut(s)	1581, 1664, 1665, 1739
MroNI	GCCGGC	1 cut(s)	2517
MseI	TTAA	9 cut(s)	347, 728, 773, 1071, 1596, 1700, 1899, 2058, 2399
MslI	CAYNNNNRTG	5 cut(s)	901, 1151, 1362, 1794, 2580
MspA1I	CMGCKG	1 cut(s)	2546
MspI	CCGG	2 cut(s)	742, 2518
MspR9I	CCNGG	2 cut(s)	742, 2124
MvaI	CCWGG	1 cut(s)	2124
MwoI	GCNNNNNNNGC	6 cut(s)	243, 1142, 1412, 1550, 1888, 2527
NaeI	GCCGGC	1 cut(s)	2519
NciI	CCSGG	1 cut(s)	742
NcoI	CCATGG	2 cut(s)	1626, 2196
NdeI	CATATG	1 cut(s)	2290
NdeII	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
NgoMIV	GCCGGC	1 cut(s)	2517
NlaIV	GGNNCC	3 cut(s)	963, 1554, 1962
NmeAIII	GCCGAG	1 cut(s)	2172
NmuCI	GTSAC	3 cut(s)	334, 1009, 1474
NspI	RCATGY	6 cut(s)	31, 1422, 1587, 1848, 2517, 2585
NspV	TTCGAA	2 cut(s)	616, 1116
OliI	CACNNNNGTG	1 cut(s)	1151
PaeI	GCATGC	3 cut(s)	31, 1422, 2517
PaeR7I	CTCGAG	1 cut(s)	1297
PagI	TCATGA	3 cut(s)	328, 673, 1108
PceI	AGGCCT	1 cut(s)	1730
PciI	ACATGT	2 cut(s)	1583, 1844
PdiI	GCCGGC	1 cut(s)	2519
PfeI	GAWTC	7 cut(s)	79, 143, 170, 362, 1256, 1967, 2652
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	6 cut(s)	505, 700, 1414, 1417, 1881, 2320
PleI	GAGTC	5 cut(s)	158, 272, 1471, 1529, 2411
PmaCI	CACGTG	1 cut(s)	532
PmlI	CACGTG	1 cut(s)	532
PpsI	GAGTC	5 cut(s)	158, 272, 1471, 1529, 2411
Ppu21I	YACGTR	1 cut(s)	532
PpuMI	RGGWCCY	1 cut(s)	961
PscI	ACATGT	2 cut(s)	1583, 1844
Psp1406I	AACGTT	1 cut(s)	1933
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	1 cut(s)	2122
PspCI	CACGTG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	1454
PspGI	CCWGG	1 cut(s)	2122
PspN4I	GGNNCC	3 cut(s)	963, 1554, 1962
PspPI	GGNCC	3 cut(s)	961, 1695, 1799
PspPPI	RGGWCCY	1 cut(s)	961
PstI	CTGCAG	3 cut(s)	214, 1165, 2323
PstNI	CAGNNNCTG	3 cut(s)	785, 1488, 2129
PsuI	RGATCY	1 cut(s)	1310
PvuII	CAGCTG	1 cut(s)	2546
RsaI	GTAC	8 cut(s)	562, 622, 1322, 1487, 1548, 1785, 1962, 2475
RsaNI	GTAC	8 cut(s)	561, 621, 1321, 1486, 1547, 1784, 1961, 2474
RseI	CAYNNNNRTG	5 cut(s)	901, 1151, 1362, 1794, 2580
SaqAI	TTAA	9 cut(s)	347, 728, 773, 1071, 1596, 1700, 1899, 2058, 2399
SatI	GCNGC	6 cut(s)	504, 699, 1413, 1416, 1880, 2319
Sau3AI	GATC	9 cut(s)	325, 821, 1088, 1105, 1310, 1777, 2485, 2548, 2572
Sau96I	GGNCC	3 cut(s)	961, 1695, 1799
ScaI	AGTACT	1 cut(s)	1548
SchI	GAGTC	5 cut(s)	159, 272, 1471, 1530, 2411
ScrFI	CCNGG	2 cut(s)	742, 2124
SfcI	CTRYAG	6 cut(s)	210, 1161, 1755, 2319, 2430, 2675
Sfr274I	CTCGAG	1 cut(s)	1297
SfuI	TTCGAA	2 cut(s)	616, 1116
SinI	GGWCC	1 cut(s)	961
SlaI	CTCGAG	1 cut(s)	1297
SmiMI	CAYNNNNRTG	5 cut(s)	901, 1151, 1362, 1794, 2580
SmlI	CTYRAG	6 cut(s)	684, 1059, 1195, 1297, 1558, 1670
SmoI	CTYRAG	6 cut(s)	684, 1059, 1195, 1297, 1558, 1670
SphI	GCATGC	3 cut(s)	31, 1422, 2517
SseBI	AGGCCT	1 cut(s)	1730
SsiI	CCGC	6 cut(s)	1289, 1328, 1882, 2120, 2193, 2407
SspI	AATATT	4 cut(s)	163, 800, 837, 2280
SspMI	CTAG	5 cut(s)	584, 804, 864, 1692, 1839
StuI	AGGCCT	1 cut(s)	1730
StyD4I	CCNGG	2 cut(s)	740, 2122
StyI	CCWWGG	4 cut(s)	546, 1626, 1838, 2196
TaaI	ACNGT	7 cut(s)	560, 1069, 1340, 1490, 2131, 2222, 2676
TaiI	ACGT	5 cut(s)	382, 534, 1430, 1936, 2475
TaqI	TCGA	8 cut(s)	141, 616, 824, 848, 1116, 1298, 2378, 2389
TaqII	GACCGA	1 cut(s)	2609
TatI	WGTACW	3 cut(s)	620, 1320, 1546
TfiI	GAWTC	7 cut(s)	79, 143, 170, 362, 1256, 1967, 2652
Tru1I	TTAA	9 cut(s)	347, 728, 773, 1071, 1596, 1700, 1899, 2058, 2399
Tru9I	TTAA	9 cut(s)	347, 728, 773, 1071, 1596, 1700, 1899, 2058, 2399
TscAI	CASTG	2 cut(s)	1158, 2664
TseFI	GTSAC	3 cut(s)	334, 1009, 1474
TseI	GCWGC	6 cut(s)	503, 698, 1412, 1415, 1879, 2318
Tsp45I	GTSAC	3 cut(s)	334, 1009, 1474
TspDTI	ATGAA	7 cut(s)	345, 416, 425, 690, 891, 1250, 1778
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	2 cut(s)	1158, 2664
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	961
XapI	RAATTY	4 cut(s)	656, 1204, 1213, 1663
XceI	RCATGY	6 cut(s)	31, 1422, 1587, 1848, 2517, 2585
XhoI	CTCGAG	1 cut(s)	1297
XmaJI	CCTAGG	1 cut(s)	1838
XmiI	GTMKAC	1 cut(s)	1335
XspI	CTAG	5 cut(s)	584, 804, 864, 1692, 1839
ZrmI	AGTACT	1 cut(s)	1548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.