Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007360

Physical Location & Seq

Genomic Coordinates Forward (+)

25236228 .. 25237375

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCGTCCTTATCCCCGAAAACTTGTACACCCTCTTAATAAAGAGACCTCCACTGTAGAGCAGTCAGCAATGTCCACATCTCCAAATTTATCTGTTTTGGAGCAAGAAAACCAATCTCCAAAGTCAGTCTTATCTGTGATTGGCTCAGATGCAATGGGTTCAACTGATTCAAGTACACCTAGTGATGGTTTATCCCCTGATTCATCTGCTGCTGGTGTCAATAGTGGGAACTTAATTCCTTCTGAGCCCAACCCATCACTCGAGGAAAGCGGATCTACAATTAACAATTGCTCACTTCCTAACAAGCAATTAAAAATGAAGCTCGAGTTATTTCCCACGGATGATGTTGATGCTAGTGGAGGTTCAGCTGAGGAGGTATCTGCCCGAACCCTTAAGCTCTTTGGAAGGACTGTATTGGTCACAGACTCCCACAGACCATCTTCTCGAGCTGCGGGGGATTCTAAATCACTGCCTTCTGATGTGCAAGAGGAGAAACCTGTGCAGACATCATTACCATGTAACCATACGGATATGGAATCTGCATCCGGGAGTGTAGAACACGTTTGGGATAATTTTCCCTATGGCAGACATCAAGGCATCTACTTTATGCAATTTCAGAATCAAAACTCAAATGTAGTAGAATCTGGTACTAATGCTTATCCTGTACCGTGGTGGAACATATGTCCGCCTTTTATTCCATTCCATATGCAGCAGCAGCCAGTGAATGAAGATGTTGATTCTAAGAAAGTTGAGAGGGAAGGTTCTTGTACCGGTTCAGATGCGGGCACAGCCAGTGATGACGAAATTCGTGACAAAGAAGTTGAGACACAGGGCGATCGACATGTTTCTGACAAAGAACGAGAGCCAAACTCGGTTCTTCAATTCAAGGTGAGTGCAAACTCCGCCTTCTCGGTATTAAGAGCAAGCACCGGACAGTATAGAAAAGGATTTGTCCCGTACAAAAGATGTGTGGCCGAGAGAGACGCCAAGTCCTCAACAATGGCAAGTGAGGACAGGGATGGGAAAAGAGTCCGCCTTTCCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009845 GO:0009889 GO:0009909 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010600 GO:0010817 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032350 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042493 GO:0046677 GO:0046885 GO:0048511 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090351 GO:0090354 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

349

Amino Acids

37.98

Weight (kDa)

5.15

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17300 AT5G17300
malus_domestica	MD09G1279300.v1.1 MD17G1271400.v1.1
prunus_persica	Prupe.3G014900_v2.0.a1 Prupe.3G014900_v2.0.a1
pyrus_communis	pycom09g18750 pycom17g26970
rosa_chinensis	RchiOBHm_Chr3g0488811 RchiOBHm_Chr3g0496521 RchiOBHm_Chr5g0036391
rosa_laevigata	RLG00000022921
rosa_multiflora	Rmu_co8203112.1_g000001 Rmu_co8274331.1_g000001 Rmu_sc0001208.1_g000043 Rmu_sc0006246.1_g000013
rosa_roxburghii	Rroxscaffold_6G00393850
rosa_rugosa	Rorug03G0241600 Rorug03G0241700
rosa_samantha	Rh3AG289800 Rh3BG326900 Rh3CG324300 Rh3DG322800 Rh5DG409800
rosa_wichuraiana	Rw3G025680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	270, 452, 686, 782, 903, 1033
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	972
AcsI	RAATTY	2 cut(s)	85, 804
AcyI	GRCGYC	1 cut(s)	984
AdeI	CACNNNGTG	1 cut(s)	182
AfaI	GTAC	6 cut(s)	27, 175, 649, 666, 769, 959
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflII	CTTAAG	1 cut(s)	392
AflIII	ACRYGT	2 cut(s)	559, 841
AgeI	ACCGGT	1 cut(s)	770
AgsI	TTSAA	4 cut(s)	162, 171, 881, 886
AhdI	GACNNNNNGTC	1 cut(s)	988
AluBI	AGCT	4 cut(s)	322, 368, 397, 449
AluI	AGCT	4 cut(s)	322, 368, 397, 449
Alw26I	GTCTC	3 cut(s)	38, 818, 975
AlwI	GGATC	1 cut(s)	280
Ama87I	CYCGRG	3 cut(s)	260, 323, 444
AoxI	GGCC	1 cut(s)	972
ApeKI	GCWGC	5 cut(s)	209, 449, 709, 712, 715
ApoI	RAATTY	2 cut(s)	85, 804
AsiGI	ACCGGT	1 cut(s)	770
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	1 cut(s)	901
AvaI	CYCGRG	3 cut(s)	260, 323, 444
BaeGI	GKGCMC	1 cut(s)	788
BanII	GRGCYC	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	5 cut(s)	196, 436, 721, 724, 727
BccI	CCATC	4 cut(s)	179, 262, 445, 1013
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	3 cut(s)	38, 818, 975
BfaI	CTAG	2 cut(s)	180, 354
BfmI	CTRYAG	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	5 cut(s)	210, 450, 710, 713, 716
BlsI	GCNGC	5 cut(s)	211, 451, 711, 714, 717
Bme1390I	CCNGG	1 cut(s)	547
BmeRI	GACNNNNNGTC	1 cut(s)	988
BmeT110I	CYCGRG	3 cut(s)	260, 323, 444
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	5 cut(s)	139, 340, 551, 606, 769
BplI	GAGNNNNNCTC	2 cut(s)	854, 886
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	984
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	336, 668
BsaWI	WCCGGW	2 cut(s)	770, 929
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	2 cut(s)	719, 792
Bse3DI	GCAATG	2 cut(s)	75, 159
BseDI	CCNNGG	2 cut(s)	336, 668
BseGI	GGATG	3 cut(s)	346, 542, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	2 cut(s)	75, 159
BseMII	CTCAG	3 cut(s)	159, 234, 360
BseNI	ACTGG	2 cut(s)	719, 792
BseRI	GAGGAG	2 cut(s)	386, 503
BseSI	GKGCMC	1 cut(s)	788
BseXI	GCAGC	5 cut(s)	196, 436, 721, 724, 727
BsgI	GTGCAG	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	838
BshFI	GGCC	1 cut(s)	974
BshTI	ACCGGT	1 cut(s)	770
BsiEI	CGRYCG	1 cut(s)	838
BsiHKCI	CYCGRG	3 cut(s)	260, 323, 444
BsiSI	CCGG	3 cut(s)	546, 771, 930
BslFI	GGGAC	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	3 cut(s)	38, 818, 975
BsmBI	CGTCTC	1 cut(s)	975
BsmFI	GGGAC	1 cut(s)	938
BsnI	GGCC	1 cut(s)	974
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	3 cut(s)	260, 323, 444
Bsp1286I	GDGCHC	2 cut(s)	249, 788
Bsp1407I	TGTACA	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	272, 835
BspACI	CCGC	6 cut(s)	270, 452, 686, 782, 903, 1033
BspANI	GGCC	1 cut(s)	974
BspCNI	CTCAG	3 cut(s)	158, 235, 361
BspPI	GGATC	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	75, 159
BsrFI	RCCGGY	1 cut(s)	770
BsrGI	TGTACA	1 cut(s)	25
BsrI	ACTGG	2 cut(s)	719, 792
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	336, 668
BssMI	GATC	2 cut(s)	272, 835
BssNI	GRCGYC	1 cut(s)	984
Bst4CI	ACNGT	4 cut(s)	55, 412, 669, 936
BstACI	GRCGYC	1 cut(s)	984
BstAFI	CTTAAG	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	784, 925
BstDEI	CTNAG	4 cut(s)	145, 243, 369, 741
BstDSI	CCRYGG	2 cut(s)	336, 668
BstF5I	GGATG	3 cut(s)	346, 542, 1024
BstKTI	GATC	2 cut(s)	275, 838
BstMAI	GTCTC	3 cut(s)	38, 818, 975
BstMBI	GATC	2 cut(s)	272, 835
BstMCI	CGRYCG	1 cut(s)	838
BstMWI	GCNNNNNNNGC	3 cut(s)	715, 788, 902
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	788
BstV1I	GCAGC	5 cut(s)	196, 436, 721, 724, 727
BstX2I	RGATCY	1 cut(s)	272
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	974
BtgI	CCRYGG	2 cut(s)	336, 668
BtsCI	GGATG	3 cut(s)	346, 542, 1024
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	4 cut(s)	51, 467, 726, 799
Cac8I	GCNNGC	2 cut(s)	784, 925
Cfr10I	RCCGGY	1 cut(s)	770
CseI	GACGC	1 cut(s)	992
Csp6I	GTAC	6 cut(s)	26, 174, 648, 665, 768, 958
CspAI	ACCGGT	1 cut(s)	770
CviAII	CATG	2 cut(s)	516, 842
CviQI	GTAC	6 cut(s)	26, 174, 648, 665, 768, 958
DdeI	CTNAG	4 cut(s)	145, 243, 369, 741
DpnI	GATC	2 cut(s)	274, 837
DpnII	GATC	2 cut(s)	272, 835
DraIII	CACNNNGTG	1 cut(s)	182
DriI	GACNNNNNGTC	1 cut(s)	988
EaeI	YGGCCR	1 cut(s)	972
Eam1105I	GACNNNNNGTC	1 cut(s)	988
EciI	GGCGGA	3 cut(s)	675, 892, 1022
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	38
Eco88I	CYCGRG	3 cut(s)	260, 323, 444
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	1 cut(s)	975
FaeI	CATG	2 cut(s)	519, 845
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	938
FatI	CATG	2 cut(s)	515, 841
FauI	CCCGC	2 cut(s)	445, 775
FauNDI	CATATG	2 cut(s)	680, 705
Fnu4HI	GCNGC	5 cut(s)	210, 450, 710, 713, 716
FokI	GGATG	3 cut(s)	353, 529, 1031
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	210, 450, 710, 713, 716
FspBI	CTAG	2 cut(s)	180, 354
GluI	GCNGC	5 cut(s)	210, 450, 710, 713, 716
HaeIII	GGCC	1 cut(s)	974
HapII	CCGG	3 cut(s)	546, 771, 930
HgaI	GACGC	1 cut(s)	992
Hin1I	GRCGYC	1 cut(s)	984
Hin1II	CATG	2 cut(s)	519, 845
HinfI	GANTC	9 cut(s)	167, 200, 425, 458, 536, 619, 641, 737, 1029
HpaII	CCGG	3 cut(s)	546, 771, 930
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	3 cut(s)	28, 75, 176
Hpy188I	TCNGA	6 cut(s)	148, 244, 478, 618, 778, 850
Hpy188III	TCNNGA	2 cut(s)	444, 809
Hpy8I	GTNNAC	3 cut(s)	28, 75, 176
HpyAV	CCTTC	5 cut(s)	249, 399, 483, 752, 916
HpyCH4III	ACNGT	4 cut(s)	55, 412, 669, 936
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	7 cut(s)	152, 484, 502, 542, 610, 709, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	715, 788, 902
HpyF3I	CTNAG	4 cut(s)	145, 243, 369, 741
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	984
Hsp92II	CATG	2 cut(s)	519, 845
Kzo9I	GATC	2 cut(s)	272, 835
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	5 cut(s)	196, 436, 721, 724, 727
LweI	GCATC	5 cut(s)	139, 340, 551, 606, 769
MaeI	CTAG	2 cut(s)	180, 354
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	418, 518, 809
MalI	GATC	2 cut(s)	274, 837
MboI	GATC	2 cut(s)	272, 835
MboII	GAAGA	3 cut(s)	432, 740, 869
MfeI	CAATTG	1 cut(s)	286
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	249, 788
MluCI	AATT	9 cut(s)	85, 234, 279, 286, 308, 571, 611, 804, 881
MlyI	GAGTC	2 cut(s)	419, 1038
MseI	TTAA	6 cut(s)	36, 233, 282, 311, 393, 917
MslI	CAYNNNNRTG	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	368
MspCI	CTTAAG	1 cut(s)	392
MspI	CCGG	3 cut(s)	546, 771, 930
MspR9I	CCNGG	1 cut(s)	547
MunI	CAATTG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	715, 788, 902
NciI	CCSGG	1 cut(s)	547
NdeI	CATATG	2 cut(s)	680, 705
NdeII	GATC	2 cut(s)	272, 835
NlaIII	CATG	2 cut(s)	519, 845
NmeAIII	GCCGAG	1 cut(s)	1000
NmuCI	GTSAC	2 cut(s)	418, 809
NspI	RCATGY	1 cut(s)	845
PaeR7I	CTCGAG	3 cut(s)	260, 323, 444
PciI	ACATGT	1 cut(s)	841
PfeI	GAWTC	7 cut(s)	167, 200, 458, 536, 619, 641, 737
PfoI	TCCNGGA	1 cut(s)	545
PinAI	ACCGGT	1 cut(s)	770
PkrI	GCNGC	5 cut(s)	211, 451, 711, 714, 717
Ple19I	CGATCG	1 cut(s)	838
PleI	GAGTC	2 cut(s)	419, 1037
PpsI	GAGTC	2 cut(s)	419, 1037
PscI	ACATGT	1 cut(s)	841
PspXI	VCTCGAGB	2 cut(s)	260, 323
PsuI	RGATCY	1 cut(s)	272
PvuI	CGATCG	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	6 cut(s)	27, 175, 649, 666, 769, 959
RsaNI	GTAC	6 cut(s)	26, 174, 648, 665, 768, 958
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	6 cut(s)	36, 233, 282, 311, 393, 917
SatI	GCNGC	5 cut(s)	210, 450, 710, 713, 716
Sau3AI	GATC	2 cut(s)	272, 835
SchI	GAGTC	2 cut(s)	419, 1038
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	249, 788
SfaNI	GCATC	5 cut(s)	139, 340, 551, 606, 769
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	3 cut(s)	260, 323, 444
SlaI	CTCGAG	3 cut(s)	260, 323, 444
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	4 cut(s)	260, 323, 392, 444
SmoI	CTYRAG	4 cut(s)	260, 323, 392, 444
Sse9I	AATT	9 cut(s)	85, 234, 279, 286, 308, 571, 611, 804, 881
SsiI	CCGC	6 cut(s)	270, 452, 686, 782, 903, 1033
SspMI	CTAG	2 cut(s)	180, 354
StyD4I	CCNGG	1 cut(s)	545
TaaI	ACNGT	4 cut(s)	55, 412, 669, 936
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	261, 324, 445, 838
TasI	AATT	9 cut(s)	85, 234, 279, 286, 308, 571, 611, 804, 881
TatI	WGTACW	2 cut(s)	25, 173
TfiI	GAWTC	7 cut(s)	167, 200, 458, 536, 619, 641, 737
Tru1I	TTAA	6 cut(s)	36, 233, 282, 311, 393, 917
Tru9I	TTAA	6 cut(s)	36, 233, 282, 311, 393, 917
TscAI	CASTG	4 cut(s)	58, 474, 726, 799
TseFI	GTSAC	2 cut(s)	418, 809
TseI	GCWGC	5 cut(s)	209, 449, 709, 712, 715
Tsp45I	GTSAC	2 cut(s)	418, 809
TspDTI	ATGAA	3 cut(s)	192, 332, 741
TspGWI	ACGGA	2 cut(s)	353, 542
TspRI	CASTG	4 cut(s)	58, 474, 726, 799
Vha464I	CTTAAG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	85, 804
XceI	RCATGY	1 cut(s)	845
XhoI	CTCGAG	3 cut(s)	260, 323, 444
XspI	CTAG	2 cut(s)	180, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.