Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004216

Physical Location & Seq

Genomic Coordinates Reverse (-)

25773808 .. 25776461

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGGGCTCGGAGGGCAGAGAAGAAGAGCAGCAGGAGCTCCAATTGTTCAGCGTGGGCTCAGAAGTAGAAGTGAGGACCGACGAGGAAGGGTTCAAAGGCGCATTGTTCAGAGCCACCATTGTCACAAGCCCCACAAACTCCGCCTCAAAGAAGAGGAAAAGGGCGTTGGTCGAGTACAAGAACTTGGTCACGGAAGACGGGTCTAAGCAGCTCAAGGAGTACGTCGATTTGGAGCACCTGAGGCCCACGCCGCCGCAGCTCGCTGACCGGAATTTTGAGGAGGGAGATGTGGTGGATGCGGATTACAGAGATGGGTGGTGGACTGGGGTCGTAGGGAAGGTTGTCGAGAACAATTCCAAGTACACCGTCGTCTTCGACAACCCTCCGGATTTGATCGAATTTCAGAAAGAACGTCTCAGATTGCATCAAGATTGGGTTAATGGCGAATGGGTTCGGCCCAATAAGCAGGAAGTATTGGCTGCTTTAGATACTCCACAAGAATTAGAGCATGTGTTGCCTGCTCAAAAAGATTCTAACAATCTTGCAGTGGCTACTAAACTAGAAAATTTGAGTGCTGCAGAGGAGAATCCTGAATCAACCAATTCAGGGAAGAAAATGGAGCAGCCAAGTTATCCACGAAGCGTCAAGGACAAAAAGATGTTAGCCCGCAATGGTAGTGCTACAGACTCGCGTCCGGTTAAAAAGTTGAAGGACGACAAGGCAGCCGAGCCCATATTATCCATTACAGCACGTCAATTGAGGAAAACGCCTGACAATAAAGAAATGCCCCAGGAATTACCTCAACTGAGCACAGGAGTTAGGGGAACAAGACGCACACGGAAACCTGTTGTACGCCATCAGTTTATTAAAACAGAGAGCCTGCTGGGGAAAAATAATGTTAAGACTAAGCAAGAGAAGGACGGTGAAGTGAATAGCCAGTGGATTCATCCCGTAGCAAGTAAAGGAAGGCGCACAAAATCTCAAACTGGAAGTCGATTGATCTCAGAATCAGATAAGGAAGCGTCTGCAAATGTTTCTTTGGCTGGACAAAATATTCAGAATGAGGGTAATATTAAAGAAACTGAAGTGCCTCAAACTATCGGGTCAACAACTAAGGGCAAGGAAGTTTCACTGGCTGAAAAACCGGCTCACTACCTGATCAAGAGTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet DUF724

Protein Analysis

393

Amino Acids

43.92

Weight (kDa)

8.61

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26800 FvH4_1g26800 FvH4_1g26800 FvH4_1g26800
malus_domestica	MD09G1286400.v1.1 MD17G1278800.v1.1
prunus_persica	Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1
pyrus_communis	pycom09g19350 pycom17g27640
rosa_chinensis	RchiOBHm_Chr3g0487021
rosa_laevigata	RLG00000023038
rosa_multiflora	Rmu_co8314393.1_g000001 Rmu_sc0002834.1_g000013 Rmu_sc0005856.1_g000019 Rmu_sc0012853.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395240
rosa_rugosa	Rorug03G0229700 Rorug03G0229800 Rorug03G0229900 Rorug03G0230000 Rorug03G0230100
rosa_samantha	Rh3AG278800 Rh3BG314700 Rh3CG313000 Rh3DG309600
rosa_wichuraiana	Rw3G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	694
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	6 cut(s)	5, 144, 254, 257, 302, 670
AcsI	RAATTY	3 cut(s)	274, 401, 568
AcuI	CTGAAG	1 cut(s)	1107
AfaI	GTAC	4 cut(s)	179, 224, 365, 855
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	2 cut(s)	97, 712
AjiI	CACGTC	1 cut(s)	755
AjnI	CCWGG	1 cut(s)	792
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	3 cut(s)	40, 214, 262
AluI	AGCT	3 cut(s)	40, 214, 262
Alw21I	GWGCWC	3 cut(s)	42, 240, 815
Alw26I	GTCTC	1 cut(s)	422
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	2 cut(s)	245, 458
ApeKI	GCWGC	7 cut(s)	31, 211, 259, 482, 578, 625, 725
ApoI	RAATTY	3 cut(s)	274, 401, 568
ArsI	GACNNNNNNTTYG	4 cut(s)	260, 292, 979, 1011
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	104, 975
AspS9I	GGNCC	3 cut(s)	78, 246, 459
AsuHPI	GGTGA	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	78
AxyI	CCTNAGG	1 cut(s)	242
BanII	GRGCYC	4 cut(s)	11, 42, 62, 735
BbsI	GAAGAC	2 cut(s)	204, 367
Bbv12I	GWGCWC	3 cut(s)	42, 240, 815
BbvI	GCAGC	7 cut(s)	43, 223, 271, 469, 565, 637, 737
BccI	CCATC	2 cut(s)	308, 867
BciT130I	CCWGG	1 cut(s)	794
BclI	TGATCA	1 cut(s)	1161
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	1 cut(s)	563
BfmI	CTRYAG	2 cut(s)	579, 684
BisI	GCNGC	9 cut(s)	32, 212, 254, 257, 260, 483, 579, 626, 726
BlsI	GCNGC	9 cut(s)	33, 213, 255, 258, 261, 484, 580, 627, 727
Bme1390I	CCNGG	1 cut(s)	794
Bme18I	GGWCC	1 cut(s)	78
BmgBI	CACGTC	1 cut(s)	755
BmgT120I	GGNCC	3 cut(s)	78, 246, 459
BmrFI	CCNGG	1 cut(s)	794
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	2 cut(s)	289, 436
BmuI	ACTGGG	1 cut(s)	336
BoxI	GACNNNNGTC	2 cut(s)	329, 693
BpiI	GAAGAC	2 cut(s)	204, 367
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	792
BsaWI	WCCGGW	3 cut(s)	270, 388, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	1147
Bse1I	ACTGG	4 cut(s)	331, 940, 994, 1140
Bse21I	CCTNAGG	1 cut(s)	242
Bse3DI	GCAATG	1 cut(s)	679
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	794
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	2 cut(s)	304, 949
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	1 cut(s)	679
BseMII	CTCAG	5 cut(s)	75, 233, 433, 800, 1020
BseNI	ACTGG	4 cut(s)	331, 940, 994, 1140
BseRI	GAGGAG	2 cut(s)	296, 599
BseXI	GCAGC	7 cut(s)	43, 223, 271, 469, 565, 637, 737
BseYI	CCCAGC	1 cut(s)	886
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	2 cut(s)	247, 460
BsiHKAI	GWGCWC	3 cut(s)	42, 240, 815
BsiSI	CCGG	4 cut(s)	271, 389, 698, 1148
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsnI	GGCC	2 cut(s)	247, 460
Bsp1286I	GDGCHC	6 cut(s)	11, 42, 62, 240, 735, 815
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	396, 1002, 1161
BspACI	CCGC	6 cut(s)	5, 144, 254, 257, 302, 670
BspANI	GGCC	2 cut(s)	247, 460
BspCNI	CTCAG	5 cut(s)	74, 234, 432, 801, 1019
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	583
BspQI	GCTCTTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	1147
BsrI	ACTGG	4 cut(s)	331, 940, 994, 1140
BssAI	RCCGGY	1 cut(s)	1147
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	3 cut(s)	396, 1002, 1161
Bst2UI	CCWGG	1 cut(s)	794
Bst4CI	ACNGT	2 cut(s)	370, 926
Bst6I	CTCTTC	2 cut(s)	21, 149
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	5 cut(s)	7, 264, 522, 670, 884
BstDEI	CTNAG	8 cut(s)	61, 207, 242, 419, 809, 909, 1006, 1116
BstF5I	GGATG	2 cut(s)	304, 949
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	2 cut(s)	104, 975
BstKTI	GATC	3 cut(s)	399, 1005, 1164
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	3 cut(s)	396, 1002, 1161
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 37, 244, 253, 259, 466, 517
BstNI	CCWGG	1 cut(s)	794
BstNSI	RCATGY	1 cut(s)	515
BstPAI	GACNNNNGTC	2 cut(s)	329, 693
BstSCI	CCNGG	1 cut(s)	792
BstSFI	CTRYAG	2 cut(s)	579, 684
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	7 cut(s)	43, 223, 271, 469, 565, 637, 737
BstV2I	GAAGAC	2 cut(s)	204, 367
Bsu36I	CCTNAGG	1 cut(s)	242
BsuRI	GGCC	2 cut(s)	247, 460
BtrI	CACGTC	1 cut(s)	755
BtsCI	GGATG	2 cut(s)	304, 949
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	3 cut(s)	555, 947, 1133
Cac8I	GCNNGC	5 cut(s)	7, 264, 522, 670, 884
CfoI	GCGC	2 cut(s)	104, 975
Cfr10I	RCCGGY	1 cut(s)	1147
Cfr13I	GGNCC	3 cut(s)	78, 246, 459
CseI	GACGC	4 cut(s)	634, 683, 843, 1014
Csp6I	GTAC	4 cut(s)	178, 223, 364, 854
CviAII	CATG	1 cut(s)	512
CviQI	GTAC	4 cut(s)	178, 223, 364, 854
DdeI	CTNAG	8 cut(s)	61, 207, 242, 419, 809, 909, 1006, 1116
DpnI	GATC	3 cut(s)	398, 1004, 1163
DpnII	GATC	3 cut(s)	396, 1002, 1161
Eam1104I	CTCTTC	2 cut(s)	21, 149
EarI	CTCTTC	2 cut(s)	21, 149
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	4 cut(s)	11, 42, 62, 735
Eco47I	GGWCC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	1107
Eco81I	CCTNAGG	1 cut(s)	242
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	792
EcoT38I	GRGCYC	4 cut(s)	11, 42, 62, 735
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	515
FaiI	YATR	2 cut(s)	513, 737
FatI	CATG	1 cut(s)	511
FauI	CCCGC	1 cut(s)	677
FbaI	TGATCA	1 cut(s)	1161
Fnu4HI	GCNGC	9 cut(s)	32, 212, 254, 257, 260, 483, 579, 626, 726
FokI	GGATG	2 cut(s)	311, 936
FriOI	GRGCYC	4 cut(s)	11, 42, 62, 735
Fsp4HI	GCNGC	9 cut(s)	32, 212, 254, 257, 260, 483, 579, 626, 726
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	2 cut(s)	103, 974
GluI	GCNGC	9 cut(s)	32, 212, 254, 257, 260, 483, 579, 626, 726
GsaI	CCCAGC	1 cut(s)	890
HaeIII	GGCC	2 cut(s)	247, 460
HapII	CCGG	4 cut(s)	271, 389, 698, 1148
HgaI	GACGC	4 cut(s)	634, 683, 843, 1014
HhaI	GCGC	2 cut(s)	104, 975
Hin1II	CATG	1 cut(s)	515
Hin6I	GCGC	2 cut(s)	102, 973
HinP1I	GCGC	2 cut(s)	102, 973
HincII	GTYRAC	1 cut(s)	1110
HindII	GTYRAC	1 cut(s)	1110
HinfI	GANTC	6 cut(s)	533, 589, 596, 689, 946, 1010
HpaII	CCGG	4 cut(s)	271, 389, 698, 1148
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	3 cut(s)	324, 366, 1110
Hpy188I	TCNGA	8 cut(s)	13, 64, 113, 408, 422, 1009, 1015, 1062
Hpy188III	TCNNGA	5 cut(s)	349, 389, 431, 593, 1165
Hpy8I	GTNNAC	3 cut(s)	324, 366, 1110
Hpy99I	CGWCG	3 cut(s)	86, 230, 374
HpyAV	CCTTC	5 cut(s)	83, 334, 706, 913, 963
HpyCH4III	ACNGT	2 cut(s)	370, 926
HpyCH4IV	ACGT	3 cut(s)	225, 415, 754
HpyCH4V	TGCA	5 cut(s)	427, 548, 581, 1031, 1173
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 37, 244, 253, 259, 466, 517
HpyF3I	CTNAG	8 cut(s)	61, 207, 242, 419, 809, 909, 1006, 1116
HpySE526I	ACGT	3 cut(s)	225, 415, 754
Hsp92II	CATG	1 cut(s)	515
HspAI	GCGC	2 cut(s)	102, 973
Kpn2I	TCCGGA	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	1161
Kzo9I	GATC	3 cut(s)	396, 1002, 1161
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	4 cut(s)	37, 45, 235, 622
Lsp1109I	GCAGC	7 cut(s)	43, 223, 271, 469, 565, 637, 737
LweI	GCATC	2 cut(s)	289, 436
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	3 cut(s)	225, 415, 754
MaeIII	GTNAC	2 cut(s)	124, 190
MalI	GATC	3 cut(s)	398, 1004, 1163
MboI	GATC	3 cut(s)	396, 1002, 1161
MboII	GAAGA	6 cut(s)	35, 38, 166, 209, 367, 625
MfeI	CAATTG	2 cut(s)	44, 758
MhlI	GDGCHC	6 cut(s)	11, 42, 62, 240, 735, 815
MluCI	AATT	9 cut(s)	44, 274, 355, 401, 503, 568, 604, 758, 797
MlyI	GAGTC	1 cut(s)	683
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	5 cut(s)	441, 702, 870, 903, 1077
MspI	CCGG	4 cut(s)	271, 389, 698, 1148
MspR9I	CCNGG	1 cut(s)	794
MunI	CAATTG	2 cut(s)	44, 758
MvaI	CCWGG	1 cut(s)	794
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	7 cut(s)	15, 37, 244, 253, 259, 466, 517
NdeII	GATC	3 cut(s)	396, 1002, 1161
NlaIII	CATG	1 cut(s)	515
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	2 cut(s)	124, 190
NspI	RCATGY	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	533, 589, 596, 946, 1010
PkrI	GCNGC	9 cut(s)	33, 213, 255, 258, 261, 484, 580, 627, 727
PleI	GAGTC	1 cut(s)	683
PpsI	GAGTC	1 cut(s)	683
PshAI	GACNNNNGTC	2 cut(s)	329, 693
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	792
PspPI	GGNCC	3 cut(s)	78, 246, 459
PstI	CTGCAG	1 cut(s)	583
RsaI	GTAC	4 cut(s)	179, 224, 365, 855
RsaNI	GTAC	4 cut(s)	178, 223, 364, 854
SacI	GAGCTC	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	441, 702, 870, 903, 1077
SatI	GCNGC	9 cut(s)	32, 212, 254, 257, 260, 483, 579, 626, 726
Sau3AI	GATC	3 cut(s)	396, 1002, 1161
Sau96I	GGNCC	3 cut(s)	78, 246, 459
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	1 cut(s)	794
SduI	GDGCHC	6 cut(s)	11, 42, 62, 240, 735, 815
SfaNI	GCATC	2 cut(s)	289, 436
SfcI	CTRYAG	2 cut(s)	579, 684
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	9 cut(s)	44, 274, 355, 401, 503, 568, 604, 758, 797
SsiI	CCGC	6 cut(s)	5, 144, 254, 257, 302, 670
SspI	AATATT	2 cut(s)	1057, 1075
SspMI	CTAG	1 cut(s)	563
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	370, 926
TaiI	ACGT	3 cut(s)	228, 418, 757
TaqI	TCGA	6 cut(s)	174, 228, 348, 378, 399, 997
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	9 cut(s)	44, 274, 355, 401, 503, 568, 604, 758, 797
TatI	WGTACW	2 cut(s)	177, 363
TauI	GCSGC	2 cut(s)	256, 259
TfiI	GAWTC	5 cut(s)	533, 589, 596, 946, 1010
Tru1I	TTAA	5 cut(s)	441, 702, 870, 903, 1077
Tru9I	TTAA	5 cut(s)	441, 702, 870, 903, 1077
TscAI	CASTG	3 cut(s)	555, 947, 1140
TseFI	GTSAC	2 cut(s)	124, 190
TseI	GCWGC	7 cut(s)	31, 211, 259, 482, 578, 625, 725
Tsp45I	GTSAC	2 cut(s)	124, 190
TspDTI	ATGAA	1 cut(s)	938
TspGWI	ACGGA	2 cut(s)	209, 856
TspRI	CASTG	3 cut(s)	555, 947, 1140
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	3 cut(s)	274, 401, 568
XceI	RCATGY	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.