Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012853.1

Orthogroup ID

OG0004216

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2259

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012853.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

gagatacatagtgcttcggattctcaacaagcggaagagcatcagccgcgactgctgcctgtccaaaatgattccaaccatcctgaggtggctgcacaaccgaaaacttcaggtgctgcaggggataaccctgaatcaactagtttaaggaagaatcttgtggagcagtcaagttttacctcaagcatcaaggatgtagcgcctaatggtggtgctacagactcgcgtcctttgaaaaagttaaaggacgacaaagtgccagaggctacattatctgttacaccacggcaattgaggaaaactccaaatgataaagaaatgctatgtgaattagccactgcgaccagggaaagcagtggaacaagaggatcgagacgagtaagaaaaccggctgtcagtcagcagctttttcacgtagagagcttggttggtgaaaagaaagttaagacaaagcaagcgaaagatggtgagctagaaaaccaccgggcgcgcactgtcaaaagtgcgcgcactgtcaaaaatgaaggaaggcgttcgaaggctcaatttggaagtgcctgggaaccggttatatgtgcgcttcctagccaagagagacataaggaaaaaagtaaggaagggtatggagttattggttctactggaaatgttgttcaaaaggagggcataagtaaagaagctgaattgcctctcactatagagtcaaaggtcaatggaaagcaggattcatcagctgaatatccatgtcagattcccaacgaagatttgctgaagctcgtgagagatcagaagaagaatgcaaatggtccagcacaagaaaacagcacggattttaagcagcaaccaactgaaggaagcagccacaaaagaaagaggggcagacctagaaaggttcctaaaaactttatcggaatcacacaagccgcacagggaggtaaaaattacttaaactctaaatcatttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet DUF724

Protein Analysis

322

Amino Acids

35.35

Weight (kDa)

9.64

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26800 FvH4_1g26800 FvH4_1g26800 FvH4_1g26800
malus_domestica	MD09G1286400.v1.1 MD17G1278800.v1.1
prunus_persica	Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1
pyrus_communis	pycom09g19350 pycom17g27640
rosa_chinensis	RchiOBHm_Chr3g0487021
rosa_laevigata	RLG00000023038
rosa_multiflora	Rmu_co8314393.1_g000001 Rmu_sc0002834.1_g000013 Rmu_sc0005856.1_g000019 Rmu_sc0012853.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395240
rosa_rugosa	Rorug03G0229700 Rorug03G0229800 Rorug03G0229900 Rorug03G0230000 Rorug03G0230100
rosa_samantha	Rh3AG278800 Rh3BG314700 Rh3CG313000 Rh3DG309600
rosa_wichuraiana	Rw3G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	49, 226, 490, 508
AciI	CCGC	3 cut(s)	32, 47, 924
AclWI	GGATC	1 cut(s)	376
AcuI	CTGAAG	3 cut(s)	93, 791, 870
AfiI	CCNNNNNNNGG	3 cut(s)	85, 209, 851
AgeI	ACCGGT	1 cut(s)	565
AgsI	TTSAA	2 cut(s)	235, 656
AhlI	ACTAGT	1 cut(s)	140
AjnI	CCWGG	2 cut(s)	344, 557
AloI	GAACNNNNNNTCC	2 cut(s)	636, 668
AluBI	AGCT	6 cut(s)	406, 423, 472, 680, 734, 775
AluI	AGCT	6 cut(s)	406, 423, 472, 680, 734, 775
Alw26I	GTCTC	2 cut(s)	367, 589
AlwI	GGATC	1 cut(s)	376
AlwNI	CAGNNNCTG	1 cut(s)	116
ApeKI	GCWGC	6 cut(s)	55, 92, 116, 403, 838, 858
AsiGI	ACCGGT	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	6 cut(s)	202, 490, 492, 508, 510, 580
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	443, 479
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	806
AxyI	CCTNAGG	1 cut(s)	84
BauI	CACGAG	1 cut(s)	776
BbvI	GCAGC	6 cut(s)	42, 79, 103, 415, 850, 870
BccI	CCATC	2 cut(s)	87, 458
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	346, 559
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	2 cut(s)	367, 589
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	4 cut(s)	141, 473, 585, 885
BfmI	CTRYAG	3 cut(s)	117, 216, 696
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	8 cut(s)	47, 56, 93, 117, 404, 839, 859, 924
BlsI	GCNGC	8 cut(s)	48, 57, 94, 118, 405, 840, 860, 925
Bme1390I	CCNGG	3 cut(s)	346, 485, 559
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	2 cut(s)	564, 894
BmrFI	CCNGG	3 cut(s)	346, 485, 559
BmsI	GCATC	2 cut(s)	49, 195
BoxI	GACNNNNGTC	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	286, 318
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	415
BsaJI	CCNNGG	3 cut(s)	284, 345, 558
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 209, 851
Bse118I	RCCGGY	2 cut(s)	388, 565
Bse1I	ACTGG	1 cut(s)	646
Bse21I	CCTNAGG	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	346, 559
BseDI	CCNNGG	3 cut(s)	284, 345, 558
BseGI	GGATG	2 cut(s)	79, 199
BseLI	CCNNNNNNNGG	3 cut(s)	85, 209, 851
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	646
BsePI	GCGCGC	2 cut(s)	488, 506
BseXI	GCAGC	6 cut(s)	42, 79, 103, 415, 850, 870
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	4 cut(s)	49, 226, 490, 508
BshTI	ACCGGT	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	389, 484, 566
BslI	CCNNNNNNNGG	3 cut(s)	85, 209, 851
BsmAI	GTCTC	2 cut(s)	367, 589
BsmBI	CGTCTC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	802
Bsp119I	TTCGAA	1 cut(s)	536
Bsp143I	GATC	2 cut(s)	368, 784
BspACI	CCGC	3 cut(s)	32, 47, 924
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	4 cut(s)	49, 226, 490, 508
BspLI	GGNNCC	2 cut(s)	564, 894
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	536
BsrFI	RCCGGY	2 cut(s)	388, 565
BsrI	ACTGG	1 cut(s)	646
BssAI	RCCGGY	2 cut(s)	388, 565
BssECI	CCNNGG	3 cut(s)	284, 345, 558
BssHII	GCGCGC	2 cut(s)	488, 506
BssMI	GATC	2 cut(s)	368, 784
BssSI	CACGAG	1 cut(s)	776
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	2 cut(s)	346, 559
Bst4CI	ACNGT	2 cut(s)	496, 514
Bst6I	CTCTTC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	456, 490, 508
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	79, 199
BstFNI	CGCG	4 cut(s)	49, 226, 490, 508
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	6 cut(s)	202, 490, 492, 508, 510, 580
BstKTI	GATC	2 cut(s)	371, 787
BstMAI	GTCTC	2 cut(s)	367, 589
BstMBI	GATC	2 cut(s)	368, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 52, 55
BstNI	CCWGG	2 cut(s)	346, 559
BstPAI	GACNNNNGTC	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	344, 483, 557
BstSFI	CTRYAG	3 cut(s)	117, 216, 696
BstUI	CGCG	4 cut(s)	49, 226, 490, 508
BstV1I	GCAGC	6 cut(s)	42, 79, 103, 415, 850, 870
Bsu36I	CCTNAGG	1 cut(s)	84
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	79, 199
BtsI	GCAGTG	2 cut(s)	336, 361
BtsIMutI	CAGTG	4 cut(s)	336, 361, 492, 510
Cac8I	GCNNGC	3 cut(s)	456, 490, 508
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	6 cut(s)	202, 490, 492, 508, 510, 580
Cfr10I	RCCGGY	2 cut(s)	388, 565
Cfr13I	GGNCC	1 cut(s)	806
CseI	GACGC	1 cut(s)	215
CspAI	ACCGGT	1 cut(s)	565
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	1 cut(s)	744
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	370, 786
DpnII	GATC	2 cut(s)	368, 784
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	806
Eco57I	CTGAAG	3 cut(s)	93, 791, 870
Eco81I	CCTNAGG	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	344, 557
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	1 cut(s)	747
FaiI	YATR	9 cut(s)	9, 325, 572, 574, 600, 624, 668, 698, 745
FatI	CATG	1 cut(s)	743
Fnu4HI	GCNGC	8 cut(s)	47, 56, 93, 117, 404, 839, 859, 924
FokI	GGATG	2 cut(s)	66, 206
Fsp4HI	GCNGC	8 cut(s)	47, 56, 93, 117, 404, 839, 859, 924
FspBI	CTAG	4 cut(s)	141, 473, 585, 885
GlaI	GCGC	6 cut(s)	201, 489, 491, 507, 509, 579
GluI	GCNGC	8 cut(s)	47, 56, 93, 117, 404, 839, 859, 924
HaeII	RGCGCY	1 cut(s)	203
HapII	CCGG	3 cut(s)	389, 484, 566
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	6 cut(s)	202, 490, 492, 508, 510, 580
Hin1II	CATG	1 cut(s)	747
Hin6I	GCGC	6 cut(s)	200, 488, 490, 506, 508, 578
HinP1I	GCGC	6 cut(s)	200, 488, 490, 506, 508, 578
HinfI	GANTC	9 cut(s)	20, 71, 134, 154, 221, 701, 725, 751, 912
HpaII	CCGG	3 cut(s)	389, 484, 566
HphI	GGTGA	2 cut(s)	443, 479
Hpy188I	TCNGA	4 cut(s)	19, 750, 789, 911
Hpy188III	TCNNGA	3 cut(s)	83, 372, 778
HpyAV	CCTTC	5 cut(s)	518, 522, 532, 611, 845
HpyCH4III	ACNGT	2 cut(s)	496, 514
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	3 cut(s)	95, 119, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 52, 55
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	1 cut(s)	747
HspAI	GCGC	6 cut(s)	200, 488, 490, 506, 508, 578
Kzo9I	GATC	2 cut(s)	368, 784
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	163
Lsp1109I	GCAGC	6 cut(s)	42, 79, 103, 415, 850, 870
LweI	GCATC	2 cut(s)	49, 195
MaeI	CTAG	4 cut(s)	141, 473, 585, 885
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	370, 786
MboI	GATC	2 cut(s)	368, 784
MboII	GAAGA	5 cut(s)	47, 163, 773, 802, 805
MfeI	CAATTG	1 cut(s)	290
MluCI	AATT	5 cut(s)	290, 329, 545, 683, 940
MlyI	GAGTC	2 cut(s)	215, 710
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	9 cut(s)	79, 190, 256, 288, 359, 655, 699, 867, 926
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	5 cut(s)	146, 242, 444, 834, 947
MslI	CAYNNNNRTG	1 cut(s)	964
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	3 cut(s)	389, 484, 566
MspR9I	CCNGG	3 cut(s)	346, 485, 559
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	2 cut(s)	346, 559
MvnI	CGCG	4 cut(s)	49, 226, 490, 508
MwoI	GCNNNNNNNGC	3 cut(s)	46, 52, 55
NciI	CCSGG	1 cut(s)	485
NdeII	GATC	2 cut(s)	368, 784
NlaIII	CATG	1 cut(s)	747
NlaIV	GGNNCC	2 cut(s)	564, 894
NspV	TTCGAA	1 cut(s)	536
PauI	GCGCGC	2 cut(s)	488, 506
PciSI	GCTCTTC	1 cut(s)	30
PctI	GAATGC	1 cut(s)	802
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	7 cut(s)	20, 71, 134, 154, 725, 751, 912
PinAI	ACCGGT	1 cut(s)	565
PkrI	GCNGC	8 cut(s)	48, 57, 94, 118, 405, 840, 860, 925
PleI	GAGTC	2 cut(s)	215, 709
PpsI	GAGTC	2 cut(s)	215, 709
Ppu21I	YACGTR	1 cut(s)	415
PshAI	GACNNNNGTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	344, 557
PspGI	CCWGG	2 cut(s)	344, 557
PspN4I	GGNNCC	2 cut(s)	564, 894
PspPI	GGNCC	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	116
PteI	GCGCGC	2 cut(s)	488, 506
PvuII	CAGCTG	1 cut(s)	734
RseI	CAYNNNNRTG	1 cut(s)	964
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	5 cut(s)	146, 242, 444, 834, 947
SatI	GCNGC	8 cut(s)	47, 56, 93, 117, 404, 839, 859, 924
Sau3AI	GATC	2 cut(s)	368, 784
Sau96I	GGNCC	1 cut(s)	806
SchI	GAGTC	2 cut(s)	215, 710
ScrFI	CCNGG	3 cut(s)	346, 485, 559
SfaNI	GCATC	2 cut(s)	49, 195
SfcI	CTRYAG	3 cut(s)	117, 216, 696
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	964
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	140
Sse9I	AATT	5 cut(s)	290, 329, 545, 683, 940
SsiI	CCGC	3 cut(s)	32, 47, 924
SspMI	CTAG	4 cut(s)	141, 473, 585, 885
StyD4I	CCNGG	3 cut(s)	344, 483, 557
TaaI	ACNGT	2 cut(s)	496, 514
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	2 cut(s)	371, 536
TasI	AATT	5 cut(s)	290, 329, 545, 683, 940
TauI	GCSGC	2 cut(s)	49, 926
TfiI	GAWTC	7 cut(s)	20, 71, 134, 154, 725, 751, 912
Tru1I	TTAA	5 cut(s)	146, 242, 444, 834, 947
Tru9I	TTAA	5 cut(s)	146, 242, 444, 834, 947
TscAI	CASTG	4 cut(s)	343, 361, 499, 517
TseI	GCWGC	6 cut(s)	55, 92, 116, 403, 838, 858
TspDTI	ATGAA	2 cut(s)	537, 717
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	4 cut(s)	343, 361, 499, 517
VpaK11BI	GGWCC	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	4 cut(s)	141, 473, 585, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.