Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004216

Physical Location & Seq

Genomic Coordinates Forward (+)

21088816 .. 21089846

Gene Structure 1031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0229800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGGACTTCGAACCACCACCAGTCCACAACCATTACCTATGTAACTCCTTGGAAAGTTTAGAAGCTCCTCTACTTAATTCTACCTATGTTCTGTCAATAGTTGATCTTCATTCAAACCAGCTTCAGGGACATTTCCCCTTGTTCTTCAGTAGTAGGTATCTAGATTATTCGAGAAATAATTTCAGCTCTAGTATACCGACTGACATTGGTGACTTCATTTCTACTGAGTCTTACCTTTCTCTTTCAAGCAATAACTTTCACGGGGCCATTCCAAAATCAATATGCAATGCAAGTGGTAAGGTTCTTGATCTGTCCAATAATTCCTTAAGTGGAAACATTCCCCAATGCTTGACTCAATTACCTCAGCTTTCGGTCATTGATTTGAAGAGAAACAACCTAAGTGGCACAATTCCGGATAATTTTCACAACATTTGTGAGCTACAAACTCTAGACCTCAGTAACAATCAGATACAAGGCAAGTTTCCGAAATCTCTTGTCAACTGCTCAAAGTTAGAGGTTTTAAACATTGGAAACAATAACATAGCTGATACTTTTCCATGCTTTTTAATGAGCTTATCCACCTTGCGTATCCTTGTGGAAACAATCACACGCGTGAGCAATGCACTTCCGCACGTGCGTAAGCGCGTGCTGATTTATGCTGGCAAGCAGCTTGGAGATGACAAAACTGCTAAAGACTACAACATTGAGGGTGGCTCTGTCCTTCATTTAGTGCTGGCACTACGTGGTGGTAGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet DUF724

Protein Analysis

253

Amino Acids

27.91

Weight (kDa)

6.43

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	101 - 203	4.9e-07	Leucine-rich repeat region
LRR_8	PF13855	122 - 182	2.3e-10	Leucine rich repeat
LRR_8	PF13855	147 - 198	1.2e-06	Leucine rich repeat
LRR_4	PF12799	147 - 184	5.5e-08	Leucine Rich repeats (2 copies)
ubiquitin	PF00240	213 - 248	1.8e-09	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26800 FvH4_1g26800 FvH4_1g26800 FvH4_1g26800
malus_domestica	MD09G1286400.v1.1 MD17G1278800.v1.1
prunus_persica	Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1
pyrus_communis	pycom09g19350 pycom17g27640
rosa_chinensis	RchiOBHm_Chr3g0487021
rosa_laevigata	RLG00000023038
rosa_multiflora	Rmu_co8314393.1_g000001 Rmu_sc0002834.1_g000013 Rmu_sc0005856.1_g000019 Rmu_sc0012853.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395240
rosa_rugosa	Rorug03G0229700 Rorug03G0229800 Rorug03G0229900 Rorug03G0230000 Rorug03G0230100
rosa_samantha	Rh3AG278800 Rh3BG314700 Rh3CG313000 Rh3DG309600
rosa_wichuraiana	Rw3G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	196
AccII	CGCG	2 cut(s)	615, 648
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	1 cut(s)	632
AcuI	CTGAAG	2 cut(s)	110, 133
AcvI	CACGTG	1 cut(s)	637
AdeI	CACNNNGTG	1 cut(s)	746
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflII	CTTAAG	1 cut(s)	328
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	3 cut(s)	117, 249, 388
AleI	CACNNNNGTG	1 cut(s)	614
AluBI	AGCT	8 cut(s)	68, 124, 189, 370, 442, 548, 576, 673
AluI	AGCT	8 cut(s)	68, 124, 189, 370, 442, 548, 576, 673
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	670
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	12
BarI	GAAGNNNNNNTAC	2 cut(s)	57, 89
BbrPI	CACGTG	1 cut(s)	637
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	1 cut(s)	682
BciVI	GTATCC	1 cut(s)	602
BfaI	CTAG	3 cut(s)	164, 192, 452
BfrI	CTTAAG	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	602
BisI	GCNGC	1 cut(s)	671
BlsI	GCNGC	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	268
BplI	GAGNNNNNCTC	2 cut(s)	701, 733
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	12
BsaAI	YACGTR	2 cut(s)	637, 746
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	23
Bse3DI	GCAATG	2 cut(s)	295, 628
BseAI	TCCGGA	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	2 cut(s)	295, 628
BseMII	CTCAG	3 cut(s)	219, 380, 472
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	682
Bsh1236I	CGCG	2 cut(s)	615, 648
BshFI	GGCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	12
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	106, 310
BspACI	CCGC	1 cut(s)	632
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	220, 379, 471
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	2 cut(s)	615, 648
BspLI	GGNNCC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	295, 628
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	106, 310
BssNAI	GTATAC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	51
Bst1107I	GTATAC	1 cut(s)	197
Bst6I	CTCTTC	1 cut(s)	383
BstAFI	CTTAAG	1 cut(s)	328
BstBAI	YACGTR	2 cut(s)	637, 746
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	650, 664, 668, 738
BstDEI	CTNAG	4 cut(s)	228, 366, 401, 458
BstFNI	CGCG	2 cut(s)	615, 648
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	2 cut(s)	109, 313
BstMBI	GATC	2 cut(s)	106, 310
BstUI	CGCG	2 cut(s)	615, 648
BstV1I	GCAGC	1 cut(s)	682
BstZ17I	GTATAC	1 cut(s)	197
BsuI	GTATCC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	269
Cac8I	GCNNGC	4 cut(s)	650, 664, 668, 738
CfoI	GCGC	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	267
CspCI	CAANNNNNGTGG	4 cut(s)	277, 312, 385, 420
CviAII	CATG	1 cut(s)	561
DdeI	CTNAG	4 cut(s)	228, 366, 401, 458
DpnI	GATC	2 cut(s)	108, 312
DpnII	GATC	2 cut(s)	106, 310
DraI	TTTAAA	1 cut(s)	525
DraIII	CACNNNGTG	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	110, 133
Eco72I	CACGTG	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	1 cut(s)	564
FaiI	YATR	8 cut(s)	43, 90, 197, 286, 545, 562, 660, 760
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	1 cut(s)	560
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	671
Fsp4HI	GCNGC	1 cut(s)	671
FspBI	CTAG	3 cut(s)	164, 192, 452
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	1 cut(s)	564
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	2 cut(s)	230, 355
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	28, 197, 502
Hpy188I	TCNGA	2 cut(s)	471, 489
Hpy188III	TCNNGA	5 cut(s)	164, 174, 308, 416, 452
Hpy8I	GTNNAC	3 cut(s)	28, 197, 502
HpyAV	CCTTC	1 cut(s)	734
HpyCH4IV	ACGT	2 cut(s)	636, 745
HpyCH4V	TGCA	3 cut(s)	288, 293, 626
HpyF3I	CTNAG	4 cut(s)	228, 366, 401, 458
HpySE526I	ACGT	2 cut(s)	636, 745
Hsp92II	CATG	1 cut(s)	564
HspAI	GCGC	1 cut(s)	646
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	106, 310
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	36, 113, 134, 429, 648, 722
Lsp1109I	GCAGC	1 cut(s)	682
MaeI	CTAG	3 cut(s)	164, 192, 452
MaeII	ACGT	2 cut(s)	636, 745
MaeIII	GTNAC	3 cut(s)	44, 212, 461
MalI	GATC	2 cut(s)	108, 312
MboI	GATC	2 cut(s)	106, 310
MboII	GAAGA	3 cut(s)	101, 139, 400
MluCI	AATT	6 cut(s)	79, 181, 322, 359, 411, 421
MluI	ACGCGT	1 cut(s)	613
MlyI	GAGTC	2 cut(s)	239, 349
MnlI	CCTC	5 cut(s)	81, 375, 467, 511, 703
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	78, 329, 524, 569
MslI	CAYNNNNRTG	1 cut(s)	614
MspCI	CTTAAG	1 cut(s)	328
MspI	CCGG	1 cut(s)	416
MvnI	CGCG	2 cut(s)	615, 648
NdeII	GATC	2 cut(s)	106, 310
NlaIII	CATG	1 cut(s)	564
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	212
NspV	TTCGAA	1 cut(s)	12
OliI	CACNNNNGTG	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	672
PleI	GAGTC	2 cut(s)	238, 349
PmaCI	CACGTG	1 cut(s)	637
PmlI	CACGTG	1 cut(s)	637
PpsI	GAGTC	2 cut(s)	238, 349
Ppu21I	YACGTR	2 cut(s)	637, 746
PspCI	CACGTG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	614
SaqAI	TTAA	4 cut(s)	78, 329, 524, 569
SatI	GCNGC	1 cut(s)	671
Sau3AI	GATC	2 cut(s)	106, 310
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	239, 349
SfuI	TTCGAA	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	6 cut(s)	79, 181, 322, 359, 411, 421
SsiI	CCGC	1 cut(s)	632
SspMI	CTAG	3 cut(s)	164, 192, 452
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	2 cut(s)	639, 748
TaqI	TCGA	2 cut(s)	12, 173
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	6 cut(s)	79, 181, 322, 359, 411, 421
Tru1I	TTAA	4 cut(s)	78, 329, 524, 569
Tru9I	TTAA	4 cut(s)	78, 329, 524, 569
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	17, 101, 208, 716
Vha464I	CTTAAG	1 cut(s)	328
XbaI	TCTAGA	2 cut(s)	163, 451
XmiI	GTMKAC	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	164, 192, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.