Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004216

Physical Location & Seq

Genomic Coordinates Forward (+)

32404679 .. 32410615

Gene Structure 5937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG278800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGCGGGGTTCGATGGCTCCGAATCCCAGCAACAAAACCAGCTATTCAGCGTAGGGTCAGAAGTGGAAGTGAGGAGCGACGAGGACGGGTTCAAAGGAGCGTGGTTCAGAGCCACCATTGTTCAGAGCCCAGCTGCTAGCTCAGCCTCAAAGAAGAAGAAGAGGGCTCTGGTGGAGTACAAGACCTTGGTCACAGAAGACGGGTCTCAGCAGCCACTGAAAGAACAGGTCGATTCCGCTTACATAAGGCCTCTGCCGCCTCACGTGCCTGACCAAGATCTTGAATACGGCCACATAGTCGACGCCGACTACAAAGACGGTTGGTGGACCGGAGTTATTGACAAGGTTATCAAGAAGAACTCCAAATATAGGATCTTCTTTGAGAACCCGCCCGACTTTCTGGAATTCGAGAGAGACCGTCTGCGACTCCATCAGGATTGGGTTGCCGGCTTTTGGGTTCGCCCCGACAAGCAGGAGATACATAGTGCTTCAGATTCTCAACAAGCGGAAGAGCATCAGCCGCGACTGCTGCCTGTCCAAAATGATTCCAACCATCCTGAGGTGGCTGCACAACCGAAAACTTCAGGTGCTGCAGGGGATAACCCTGAATCAACTAGTTTAAGGAAGAATCTTGTGGAGCAGTCAAGTTTTACCTCAAGCATCAAGGATGTAGCGCCTAATGGTGGTGCTACAGACTCGCGTCCTTTGAAAAAGTTAAAGGACGACAAAGTGCCAGAGGCTACATTATCTGTTACACCACGGCAATTGAGGAAAACTCCAAATGATAAAGAAATGCTATGTGAATTAGCCACTGTGACCAGGGAAAGCAGTGGAACTAGAGGATCAAGACGAGTAAGAAAACCGGCTGTTAGTCAGCAGCTTTTTCACGTAGAGAGCTTGGTTGGTGAAAAGAAAGTTAAGACAAAGCAAGCGAAAGATGGTGAGCTAGAAAACCACCGGGCGCGCACTGTCAAAAGTGCGCGCACTGTCAAAAGTGAAGGAAGGCGTTCGAAGGCTCAATTTGGAAGTGCCTGGGAACCGGTTATATGTGCGCTTCCTAGCCAAGAGAGACATAAGGAAAAAAGTAAGGAAGGGTATGGAGTTATTGGTTCTGCTGGAAATGTTGTTCAAAAGGAGGGCATAAGTAAAGAAGCTGAATTGCCTCTCACTATAGAGTCAAAGGCCAATGGAAAGCAGGATTCATCAGCTGAATATCCATGTCAGATTCCCAACGAAGATTTGCTGAAGCTCGTGAGAGATCAGAAGAAGAATGCAAATGGTCCAGCACAAGAAAACAGCACGGATTTTAAGCAGCAACCAACTGAAGGAAGCAGCCACAAAAGAAAGAGGGGCAGACCTAGAAAGGTTCCTAAAAACTTTATCGTAATCACACAAGCCGCACAGGGAGTCAGGGAACTAAATGGATCAAGAAATGTTGCTGACAAAAGTGCTGTAGAAGATCAGAGACTTGATGAAGTTGCTTTGCATTTGCCCGGAGGGAGAGATGCTTCAGATTCACAAGATGCGTCTAGGAGAAATACAGCTGATGTTCCTGGAACAAGGGGCGTACCAAATGAAGCTGCTAGGACCCGTGTTCAAGCATCGGAAAATATAGATGAAGATGACCAACCTCTCTCCACATGGTTTGGAGGAATACAGGGTCCAGCAAACATGGATGAATTAAGTAAAACTGTTGAACAAGTTGAGCTTGCCAGAGATTCTACTCCAGTTGATTCAGTCAGTGACACTGTGCCAGATGATAACCAAATTATGCCATTTGTGAAGAGCTCCCCAATCTGGAAAGCAATTGAATCATTTGACGTATTCAGAATAATGCCACAAAATCCACATTTTCGTCCCTTGGTTAAATGTAAAGAGGAATATCGCGAGGGATTTGCTATTGGCAATATGGTGACCTTTTCCAGTTTGGTGGAGAAGATATCGAGTCTGCATTTTGATGACCCTATACAGGTTTTTGATAGCATTCTGGAGAGTCTTTTTGACTTGGAAAAATATGGATTCAATGTTTCCGTTTTACGTGGGCGTGTGAACGAACTTTTGTCTATCAAACAAAGGCATGGACAGTTTGAGGGAGAATCAAAAGACGTGGAAAGTAAGATGGTGGAGCAAACTCAAGAGAAATCAAAACTTGAAGATGAGGCTGATTGCATCGAGAAAAAAATAATTGAGTTAAAGGAGAAGCATGCATCGATCCAGGCAGAGATAGGGGCTAAAGAGCGTGACATTGCTGGCTTGCAGTTGAGTGTGGATGCTATCAATGAAAGCATTAAGAACACACGTTCTGATTTTGAGAAGGCAGCTTTGGTCCCATTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet DUF724

Protein Analysis

779

Amino Acids

86.86

Weight (kDa)

6.05

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	19 - 87	9e-19	Agenet domain
DUF724	PF05266	591 - 774	2.8e-61	Protein of unknown function (DUF724)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26800 FvH4_1g26800 FvH4_1g26800 FvH4_1g26800
malus_domestica	MD09G1286400.v1.1 MD17G1278800.v1.1
prunus_persica	Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1
pyrus_communis	pycom09g19350 pycom17g27640
rosa_chinensis	RchiOBHm_Chr3g0487021
rosa_laevigata	RLG00000023038
rosa_multiflora	Rmu_co8314393.1_g000001 Rmu_sc0002834.1_g000013 Rmu_sc0005856.1_g000019 Rmu_sc0012853.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395240
rosa_rugosa	Rorug03G0229700 Rorug03G0229800 Rorug03G0229900 Rorug03G0230000 Rorug03G0230100
rosa_samantha	Rh3AG278800 Rh3BG314700 Rh3CG313000 Rh3DG309600
rosa_wichuraiana	Rw3G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	5 cut(s)	523, 700, 964, 982, 1887
AciI	CCGC	7 cut(s)	5, 237, 257, 389, 506, 521, 1398
AclWI	GGATC	4 cut(s)	380, 850, 1432, 2206
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	5 cut(s)	474, 567, 1265, 1344, 1494
AcvI	CACGTG	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	2 cut(s)	179, 1569
AfiI	CCNNNNNNNGG	7 cut(s)	369, 453, 559, 683, 1325, 1797, 1969
AflIII	ACRYGT	1 cut(s)	2297
AgeI	ACCGGT	1 cut(s)	1039
AgsI	TTSAA	9 cut(s)	94, 284, 709, 1130, 1598, 1697, 1811, 2023, 2153
AhlI	ACTAGT	1 cut(s)	614
AjiI	CACGTC	1 cut(s)	2107
AjnI	CCWGG	4 cut(s)	818, 1031, 1552, 2214
AjuI	GAANNNNNNNTTGG	2 cut(s)	2306, 2338
AloI	GAACNNNNNNTCC	2 cut(s)	1110, 1142
Alw21I	GWGCWC	1 cut(s)	1790
Alw26I	GTCTC	4 cut(s)	210, 408, 1063, 1459
AlwI	GGATC	4 cut(s)	380, 850, 1432, 2206
AlwNI	CAGNNNCTG	2 cut(s)	217, 590
AoxI	GGCC	3 cut(s)	248, 289, 1182
ApoI	RAATTY	1 cut(s)	404
AsiGI	ACCGGT	1 cut(s)	1039
Asp700I	GAANNNNTTC	1 cut(s)	1006
AspLEI	GCGC	6 cut(s)	676, 964, 966, 982, 984, 1054
AspS9I	GGNCC	5 cut(s)	327, 1280, 1587, 1661, 2326
AsuC2I	CCSGG	2 cut(s)	959, 1494
AsuHPI	GGTGA	3 cut(s)	917, 953, 1924
AsuII	TTCGAA	1 cut(s)	1010
AsuNHI	GCTAGC	1 cut(s)	137
AvaII	GGWCC	5 cut(s)	327, 1280, 1587, 1661, 2326
AxyI	CCTNAGG	1 cut(s)	558
BanII	GRGCYC	3 cut(s)	131, 169, 1790
BauI	CACGAG	1 cut(s)	1250
BbrPI	CACGTG	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	1790
BccI	CCATC	5 cut(s)	8, 438, 561, 932, 2113
BceAI	ACGGC	2 cut(s)	304, 776
BcgI	CGANNNNNNTGC	2 cut(s)	1877, 1911
BciT130I	CCWGG	4 cut(s)	820, 1033, 1554, 2216
BcnI	CCSGG	2 cut(s)	959, 1494
BcoDI	GTCTC	4 cut(s)	210, 408, 1063, 1459
BcuI	ACTAGT	1 cut(s)	614
BfaI	CTAG	8 cut(s)	138, 615, 837, 947, 1059, 1359, 1530, 1584
BfmI	CTRYAG	4 cut(s)	591, 690, 1170, 1452
BfoI	RGCGCY	1 cut(s)	677
BglII	AGATCT	1 cut(s)	277
BlpI	GCTNAGC	1 cut(s)	142
Bme1390I	CCNGG	6 cut(s)	820, 959, 1033, 1494, 1554, 2216
Bme18I	GGWCC	5 cut(s)	327, 1280, 1587, 1661, 2326
BmgBI	CACGTC	1 cut(s)	2107
BmgT120I	GGNCC	5 cut(s)	327, 1280, 1587, 1661, 2326
BmiI	GGNNCC	6 cut(s)	19, 1038, 1368, 1589, 1662, 2328
BmrFI	CCNGG	6 cut(s)	820, 959, 1033, 1494, 1554, 2216
BmsI	GCATC	8 cut(s)	523, 669, 1495, 1513, 1610, 2178, 2216, 2260
BmtI	GCTAGC	1 cut(s)	141
BoxI	GACNNNNGTC	2 cut(s)	188, 699
BpiI	GAAGAC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
BpmI	CTGGAG	2 cut(s)	1710, 2009
Bpu1102I	GCTNAGC	1 cut(s)	142
Bpu14I	TTCGAA	1 cut(s)	1010
BpuEI	CTTGAG	2 cut(s)	640, 2118
BpuMI	CCSGG	2 cut(s)	959, 1494
Bsa29I	ATCGAT	1 cut(s)	2210
BsaAI	YACGTR	3 cut(s)	265, 889, 2039
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	2 cut(s)	210, 408
BsaJI	CCNNGG	5 cut(s)	186, 758, 819, 1032, 1860
BsaWI	WCCGGW	2 cut(s)	329, 1039
Bsc4I	CCNNNNNNNGG	7 cut(s)	369, 453, 559, 683, 1325, 1797, 1969
Bse118I	RCCGGY	3 cut(s)	446, 862, 1039
Bse1I	ACTGG	2 cut(s)	1727, 1923
Bse21I	CCTNAGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	2244
BseBI	CCWGG	4 cut(s)	820, 1033, 1554, 2216
BseCI	ATCGAT	1 cut(s)	2210
BseDI	CCNNGG	5 cut(s)	186, 758, 819, 1032, 1860
BseGI	GGATG	4 cut(s)	553, 673, 1681, 2275
BseLI	CCNNNNNNNGG	7 cut(s)	369, 453, 559, 683, 1325, 1797, 1969
BseMI	GCAATG	1 cut(s)	2244
BseMII	CTCAG	3 cut(s)	156, 221, 549
BseNI	ACTGG	2 cut(s)	1727, 1923
BsePI	GCGCGC	2 cut(s)	962, 980
BseRI	GAGGAG	1 cut(s)	88
BseYI	CCCAGC	2 cut(s)	27, 130
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	5 cut(s)	523, 700, 964, 982, 1887
BshFI	GGCC	3 cut(s)	250, 291, 1184
BshTI	ACCGGT	1 cut(s)	1039
BshVI	ATCGAT	1 cut(s)	2210
BsiHKAI	GWGCWC	1 cut(s)	1790
BsiSI	CCGG	6 cut(s)	330, 447, 863, 958, 1040, 1494
BslFI	GGGAC	2 cut(s)	1842, 2312
BslI	CCNNNNNNNGG	7 cut(s)	369, 453, 559, 683, 1325, 1797, 1969
BsmAI	GTCTC	4 cut(s)	210, 408, 1063, 1459
BsmFI	GGGAC	2 cut(s)	1842, 2312
BsmI	GAATGC	2 cut(s)	1276, 1983
BsnI	GGCC	3 cut(s)	250, 291, 1184
Bso31I	GGTCTC	2 cut(s)	210, 408
Bsp119I	TTCGAA	1 cut(s)	1010
Bsp1286I	GDGCHC	3 cut(s)	131, 169, 1790
Bsp143I	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
Bsp1720I	GCTNAGC	1 cut(s)	142
Bsp68I	TCGCGA	1 cut(s)	1887
BspACI	CCGC	7 cut(s)	5, 237, 257, 389, 506, 521, 1398
BspANI	GGCC	3 cut(s)	250, 291, 1184
BspCNI	CTCAG	3 cut(s)	155, 220, 550
BspDI	ATCGAT	1 cut(s)	2210
BspFNI	CGCG	5 cut(s)	523, 700, 964, 982, 1887
BspLI	GGNNCC	6 cut(s)	19, 1038, 1368, 1589, 1662, 2328
BspMAI	CTGCAG	1 cut(s)	595
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	4 cut(s)	380, 850, 1432, 2206
BspQI	GCTCTTC	2 cut(s)	504, 1778
BspT104I	TTCGAA	1 cut(s)	1010
BspTNI	GGTCTC	2 cut(s)	210, 408
BsrDI	GCAATG	1 cut(s)	2244
BsrFI	RCCGGY	3 cut(s)	446, 862, 1039
BsrI	ACTGG	2 cut(s)	1727, 1923
BssAI	RCCGGY	3 cut(s)	446, 862, 1039
BssECI	CCNNGG	5 cut(s)	186, 758, 819, 1032, 1860
BssHII	GCGCGC	2 cut(s)	962, 980
BssMI	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
BssNI	GRCGYC	1 cut(s)	303
BssSI	CACGAG	1 cut(s)	1250
BssT1I	CCWWGG	2 cut(s)	186, 1860
Bst2BI	CACGAG	1 cut(s)	1250
Bst2UI	CCWGG	4 cut(s)	820, 1033, 1554, 2216
Bst4CI	ACNGT	8 cut(s)	320, 419, 814, 970, 988, 1693, 1750, 2085
Bst6I	CTCTTC	3 cut(s)	155, 504, 1778
BstACI	GRCGYC	1 cut(s)	303
BstBAI	YACGTR	3 cut(s)	265, 889, 2039
BstBI	TTCGAA	1 cut(s)	1010
BstC8I	GCNNGC	9 cut(s)	139, 448, 930, 964, 982, 1710, 2205, 2251, 2255
BstDEI	CTNAG	3 cut(s)	142, 207, 558
BstDSI	CCRYGG	1 cut(s)	758
BstEII	GGTNACC	1 cut(s)	1912
BstF5I	GGATG	4 cut(s)	553, 673, 1681, 2275
BstFNI	CGCG	5 cut(s)	523, 700, 964, 982, 1887
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	6 cut(s)	676, 964, 966, 982, 984, 1054
BstKTI	GATC	7 cut(s)	280, 375, 845, 1261, 1427, 1462, 2214
BstMAI	GTCTC	4 cut(s)	210, 408, 1063, 1459
BstMBI	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 256, 265, 520, 526, 529
BstNI	CCWGG	4 cut(s)	820, 1033, 1554, 2216
BstNSI	RCATGY	1 cut(s)	2207
BstPAI	GACNNNNGTC	2 cut(s)	188, 699
BstPI	GGTNACC	1 cut(s)	1912
BstSCI	CCNGG	6 cut(s)	818, 957, 1031, 1492, 1552, 2214
BstSFI	CTRYAG	4 cut(s)	591, 690, 1170, 1452
BstUI	CGCG	5 cut(s)	523, 700, 964, 982, 1887
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	277, 372
BstXI	CCANNNNNNTGG	1 cut(s)	1930
BstYI	RGATCY	2 cut(s)	277, 372
Bsu15I	ATCGAT	1 cut(s)	2210
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	250, 291, 1184
BsuTUI	ATCGAT	1 cut(s)	2210
BtgI	CCRYGG	1 cut(s)	758
BtrI	CACGTC	1 cut(s)	2107
BtsCI	GGATG	4 cut(s)	553, 673, 1681, 2275
BtsI	GCAGTG	1 cut(s)	835
BtsIMutI	CAGTG	7 cut(s)	215, 810, 835, 966, 984, 1746, 1747
BtuMI	TCGCGA	1 cut(s)	1887
Cac8I	GCNNGC	9 cut(s)	139, 448, 930, 964, 982, 1710, 2205, 2251, 2255
CaiI	CAGNNNCTG	2 cut(s)	217, 590
CfoI	GCGC	6 cut(s)	676, 964, 966, 982, 984, 1054
Cfr10I	RCCGGY	3 cut(s)	446, 862, 1039
Cfr13I	GGNCC	5 cut(s)	327, 1280, 1587, 1661, 2326
ClaI	ATCGAT	1 cut(s)	2210
CseI	GACGC	3 cut(s)	311, 689, 1515
Csp6I	GTAC	2 cut(s)	178, 1568
CspAI	ACCGGT	1 cut(s)	1039
CspCI	CAANNNNNGTGG	6 cut(s)	747, 782, 1627, 1662, 2088, 2123
CviAII	CATG	5 cut(s)	1218, 1641, 1672, 2078, 2204
CviQI	GTAC	2 cut(s)	178, 1568
DdeI	CTNAG	3 cut(s)	142, 207, 558
DpnI	GATC	7 cut(s)	279, 374, 844, 1260, 1426, 1461, 2213
DpnII	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	3 cut(s)	155, 504, 1778
EarI	CTCTTC	3 cut(s)	155, 504, 1778
Ecl136II	GAGCTC	1 cut(s)	1788
Eco130I	CCWWGG	2 cut(s)	186, 1860
Eco147I	AGGCCT	1 cut(s)	250
Eco24I	GRGCYC	3 cut(s)	131, 169, 1790
Eco31I	GGTCTC	2 cut(s)	210, 408
Eco32I	GATATC	1 cut(s)	1941
Eco47I	GGWCC	5 cut(s)	327, 1280, 1587, 1661, 2326
Eco53kI	GAGCTC	1 cut(s)	1788
Eco57I	CTGAAG	5 cut(s)	474, 567, 1265, 1344, 1494
Eco72I	CACGTG	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	558
Eco91I	GGTNACC	1 cut(s)	1912
EcoICRI	GAGCTC	1 cut(s)	1788
EcoO109I	RGGNCCY	1 cut(s)	1587
EcoO65I	GGTNACC	1 cut(s)	1912
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	4 cut(s)	818, 1031, 1552, 2214
EcoRV	GATATC	1 cut(s)	1941
EcoT14I	CCWWGG	2 cut(s)	186, 1860
EcoT22I	ATGCAT	1 cut(s)	2209
EcoT38I	GRGCYC	3 cut(s)	131, 169, 1790
ErhI	CCWWGG	2 cut(s)	186, 1860
FaeI	CATG	5 cut(s)	1221, 1644, 1675, 2081, 2207
FalI	AAGNNNNNCTT	2 cut(s)	1692, 1724
FaqI	GGGAC	2 cut(s)	1842, 2312
FatI	CATG	5 cut(s)	1217, 1640, 1671, 2077, 2203
FauI	CCCGC	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	300
FokI	GGATG	4 cut(s)	540, 680, 1688, 2282
FriOI	GRGCYC	3 cut(s)	131, 169, 1790
FspBI	CTAG	8 cut(s)	138, 615, 837, 947, 1059, 1359, 1530, 1584
GlaI	GCGC	6 cut(s)	675, 963, 965, 981, 983, 1053
GsaI	CCCAGC	2 cut(s)	31, 134
GsuI	CTGGAG	2 cut(s)	1710, 2009
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	250, 291, 1184
HapII	CCGG	6 cut(s)	330, 447, 863, 958, 1040, 1494
HgaI	GACGC	3 cut(s)	311, 689, 1515
HhaI	GCGC	6 cut(s)	676, 964, 966, 982, 984, 1054
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	5 cut(s)	1221, 1644, 1675, 2081, 2207
Hin6I	GCGC	6 cut(s)	674, 962, 964, 980, 982, 1052
HinP1I	GCGC	6 cut(s)	674, 962, 964, 980, 982, 1052
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HpaII	CCGG	6 cut(s)	330, 447, 863, 958, 1040, 1494
HphI	GGTGA	3 cut(s)	917, 953, 1924
Hpy166II	GTNNAC	3 cut(s)	301, 327, 2050
Hpy8I	GTNNAC	3 cut(s)	301, 327, 2050
Hpy99I	CGWCG	2 cut(s)	83, 305
HpyAV	CCTTC	6 cut(s)	992, 996, 1006, 1085, 1319, 2308
HpyCH4III	ACNGT	8 cut(s)	320, 419, 814, 970, 988, 1693, 1750, 2085
HpyCH4IV	ACGT	6 cut(s)	264, 888, 1821, 2038, 2106, 2299
HpyCH4V	TGCA	8 cut(s)	569, 593, 1274, 1486, 1951, 2169, 2207, 2257
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 256, 265, 520, 526, 529
HpyF3I	CTNAG	3 cut(s)	142, 207, 558
HpySE526I	ACGT	6 cut(s)	264, 888, 1821, 2038, 2106, 2299
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	1221, 1644, 1675, 2081, 2207
HspAI	GCGC	6 cut(s)	674, 962, 964, 980, 982, 1052
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
LguI	GCTCTTC	2 cut(s)	504, 1778
LmnI	GCTCC	6 cut(s)	23, 75, 98, 637, 1793, 2125
LweI	GCATC	8 cut(s)	523, 669, 1495, 1513, 1610, 2178, 2216, 2260
MaeI	CTAG	8 cut(s)	138, 615, 837, 947, 1059, 1359, 1530, 1584
MaeII	ACGT	6 cut(s)	264, 888, 1821, 2038, 2106, 2299
MaeIII	GTNAC	6 cut(s)	190, 751, 814, 1742, 1912, 2240
MalI	GATC	7 cut(s)	279, 374, 844, 1260, 1426, 1461, 2213
MboI	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
MfeI	CAATTG	2 cut(s)	764, 1806
MflI	RGATCY	2 cut(s)	277, 372
MhlI	GDGCHC	3 cut(s)	131, 169, 1790
MluCI	AATT	9 cut(s)	404, 764, 803, 1019, 1157, 1679, 1767, 1806, 2184
MlyI	GAGTC	6 cut(s)	420, 689, 1184, 1416, 1954, 2002
MmeI	TCCRAC	1 cut(s)	573
Mph1103I	ATGCAT	1 cut(s)	2209
MroNI	GCCGGC	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	1006
MseI	TTAA	8 cut(s)	620, 716, 918, 1308, 1682, 1866, 2192, 2289
MslI	CAYNNNNRTG	1 cut(s)	1956
MspA1I	CMGCKG	3 cut(s)	134, 1208, 1544
MspI	CCGG	6 cut(s)	330, 447, 863, 958, 1040, 1494
MspR9I	CCNGG	6 cut(s)	820, 959, 1033, 1494, 1554, 2216
MunI	CAATTG	2 cut(s)	764, 1806
Mva1269I	GAATGC	2 cut(s)	1276, 1983
MvaI	CCWGG	4 cut(s)	820, 1033, 1554, 2216
MvnI	CGCG	5 cut(s)	523, 700, 964, 982, 1887
MwoI	GCNNNNNNNGC	6 cut(s)	143, 256, 265, 520, 526, 529
NaeI	GCCGGC	1 cut(s)	448
NciI	CCSGG	2 cut(s)	959, 1494
NdeII	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
NgoMIV	GCCGGC	1 cut(s)	446
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	5 cut(s)	1221, 1644, 1675, 2081, 2207
NlaIV	GGNNCC	6 cut(s)	19, 1038, 1368, 1589, 1662, 2328
NmuCI	GTSAC	5 cut(s)	190, 814, 1742, 1912, 2240
NruI	TCGCGA	1 cut(s)	1887
NsiI	ATGCAT	1 cut(s)	2209
NspI	RCATGY	1 cut(s)	2207
NspV	TTCGAA	1 cut(s)	1010
PaeI	GCATGC	1 cut(s)	2207
PauI	GCGCGC	2 cut(s)	962, 980
PceI	AGGCCT	1 cut(s)	250
PciSI	GCTCTTC	2 cut(s)	504, 1778
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	2 cut(s)	1276, 1983
PdiI	GCCGGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	1006
PfoI	TCCNGGA	1 cut(s)	1552
PinAI	ACCGGT	1 cut(s)	1039
PleI	GAGTC	6 cut(s)	420, 689, 1183, 1415, 1953, 2001
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
PpsI	GAGTC	6 cut(s)	420, 689, 1183, 1415, 1953, 2001
Ppu21I	YACGTR	3 cut(s)	265, 889, 2039
PpuMI	RGGWCCY	1 cut(s)	1587
PshAI	GACNNNNGTC	2 cut(s)	188, 699
Psp124BI	GAGCTC	1 cut(s)	1790
Psp5II	RGGWCCY	1 cut(s)	1587
Psp6I	CCWGG	4 cut(s)	818, 1031, 1552, 2214
PspCI	CACGTG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	1912
PspFI	CCCAGC	2 cut(s)	27, 130
PspGI	CCWGG	4 cut(s)	818, 1031, 1552, 2214
PspN4I	GGNNCC	6 cut(s)	19, 1038, 1368, 1589, 1662, 2328
PspPI	GGNCC	5 cut(s)	327, 1280, 1587, 1661, 2326
PspPPI	RGGWCCY	1 cut(s)	1587
PstI	CTGCAG	1 cut(s)	595
PstNI	CAGNNNCTG	2 cut(s)	217, 590
PsuI	RGATCY	2 cut(s)	277, 372
PteI	GCGCGC	2 cut(s)	962, 980
PvuII	CAGCTG	3 cut(s)	134, 1208, 1544
RruI	TCGCGA	1 cut(s)	1887
RsaI	GTAC	2 cut(s)	179, 1569
RsaNI	GTAC	2 cut(s)	178, 1568
RseI	CAYNNNNRTG	1 cut(s)	1956
SacI	GAGCTC	1 cut(s)	1790
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	2 cut(s)	504, 1778
SaqAI	TTAA	8 cut(s)	620, 716, 918, 1308, 1682, 1866, 2192, 2289
Sau3AI	GATC	7 cut(s)	277, 372, 842, 1258, 1424, 1459, 2211
Sau96I	GGNCC	5 cut(s)	327, 1280, 1587, 1661, 2326
SchI	GAGTC	6 cut(s)	420, 689, 1184, 1416, 1954, 2002
ScrFI	CCNGG	6 cut(s)	820, 959, 1033, 1494, 1554, 2216
SduI	GDGCHC	3 cut(s)	131, 169, 1790
SfaNI	GCATC	8 cut(s)	523, 669, 1495, 1513, 1610, 2178, 2216, 2260
SfcI	CTRYAG	4 cut(s)	591, 690, 1170, 1452
SfuI	TTCGAA	1 cut(s)	1010
SinI	GGWCC	5 cut(s)	327, 1280, 1587, 1661, 2326
SmiMI	CAYNNNNRTG	1 cut(s)	1956
SmlI	CTYRAG	2 cut(s)	655, 2133
SmoI	CTYRAG	2 cut(s)	655, 2133
SpeI	ACTAGT	1 cut(s)	614
SphI	GCATGC	1 cut(s)	2207
Sse9I	AATT	9 cut(s)	404, 764, 803, 1019, 1157, 1679, 1767, 1806, 2184
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	7 cut(s)	5, 237, 257, 389, 506, 521, 1398
SspMI	CTAG	8 cut(s)	138, 615, 837, 947, 1059, 1359, 1530, 1584
SstI	GAGCTC	1 cut(s)	1790
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	6 cut(s)	818, 957, 1031, 1492, 1552, 2214
StyI	CCWWGG	2 cut(s)	186, 1860
TaaI	ACNGT	8 cut(s)	320, 419, 814, 970, 988, 1693, 1750, 2085
TaiI	ACGT	6 cut(s)	267, 891, 1824, 2041, 2109, 2302
TaqI	TCGA	8 cut(s)	12, 231, 300, 408, 1010, 1943, 2172, 2210
TasI	AATT	9 cut(s)	404, 764, 803, 1019, 1157, 1679, 1767, 1806, 2184
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	3 cut(s)	259, 523, 1400
Tru1I	TTAA	8 cut(s)	620, 716, 918, 1308, 1682, 1866, 2192, 2289
Tru9I	TTAA	8 cut(s)	620, 716, 918, 1308, 1682, 1866, 2192, 2289
TscAI	CASTG	7 cut(s)	222, 817, 835, 973, 991, 1747, 1753
TseFI	GTSAC	5 cut(s)	190, 814, 1742, 1912, 2240
Tsp45I	GTSAC	5 cut(s)	190, 814, 1742, 1912, 2240
TspDTI	ATGAA	6 cut(s)	1191, 1488, 1590, 1632, 1692, 2295
TspGWI	ACGGA	2 cut(s)	1316, 2020
TspRI	CASTG	7 cut(s)	222, 817, 835, 973, 991, 1747, 1753
VpaK11BI	GGWCC	5 cut(s)	327, 1280, 1587, 1661, 2326
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	1 cut(s)	2207
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	1006
XspI	CTAG	8 cut(s)	138, 615, 837, 947, 1059, 1359, 1530, 1584
Zsp2I	ATGCAT	1 cut(s)	2209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.