Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314393.1

Orthogroup ID

OG0004216

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 929

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314393.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 775 bp

attcacaagatgcgtccaggagaaatacagctgatgttcctggaacaaggggtgtaccaaatgaagctgctaggacccgtgttcaagcatcggaaaatatagatgatgatgaccaacctctctccacatggtttggaggaatacagggtccagcaaacatggatgaattaagtaaaactgttgaacaagttgagcttgccagagattctactccagttgattcagtcagtgacactgtgccagatgagaaccaaattatgccatttgtgaagagctccccaatctggaaagcaattgaatcatttgacgtattcagaataatgccacaaaatccacattttcgtcccttggttaaatgtaaagaggaatatcgcgagggatttgctattggcaatatggtgaccttttccagtttggtggagaagatatcgagtctgcattttgatgaccctatacaggtttttgatagcattctggagagtctttttgacttggaaaaatatggattcaatgttaccgttttacgtgggcgtgtgaacgaacttttgtctatcaaacaaaggcatggacagtttgagggcgaatcaaaagacgtggaaagtaagatggtggagcaaactcaagagaaatcaaaacttgaagatgaagctgattgcatcgagaaaaaaataattgagttaaaggagaagcatgcatcgatccaggcagagataggggctaaagagcgtgacattgctagcttgcagttgagtgtggatgctatcaatgaaagcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet DUF724

Protein Analysis

257

Amino Acids

28.87

Weight (kDa)

4.67

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004216)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26800 FvH4_1g26800 FvH4_1g26800 FvH4_1g26800
malus_domestica	MD09G1286400.v1.1 MD17G1278800.v1.1
prunus_persica	Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1 Prupe.3G007100_v2.0.a1
pyrus_communis	pycom09g19350 pycom17g27640
rosa_chinensis	RchiOBHm_Chr3g0487021
rosa_laevigata	RLG00000023038
rosa_multiflora	Rmu_co8314393.1_g000001 Rmu_sc0002834.1_g000013 Rmu_sc0005856.1_g000019 Rmu_sc0012853.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395240
rosa_rugosa	Rorug03G0229700 Rorug03G0229800 Rorug03G0229900 Rorug03G0230000 Rorug03G0230100
rosa_samantha	Rh3AG278800 Rh3BG314700 Rh3CG313000 Rh3DG309600
rosa_wichuraiana	Rw3G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AclWI	GGATC	1 cut(s)	693
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	284, 456
AgsI	TTSAA	5 cut(s)	85, 184, 298, 510, 640
AjiI	CACGTC	1 cut(s)	594
AjnI	CCWGG	3 cut(s)	16, 39, 701
AluBI	AGCT	6 cut(s)	31, 67, 195, 275, 649, 740
AluI	AGCT	6 cut(s)	31, 67, 195, 275, 649, 740
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	693
ApeKI	GCWGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	74, 148
AsuHPI	GGTGA	1 cut(s)	411
AsuNHI	GCTAGC	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	74, 148
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	600
BcgI	CGANNNNNNTGC	2 cut(s)	364, 398
BciT130I	CCWGG	3 cut(s)	18, 41, 703
BfaI	CTAG	2 cut(s)	71, 737
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	3 cut(s)	18, 41, 703
Bme18I	GGWCC	2 cut(s)	74, 148
BmgBI	CACGTC	1 cut(s)	594
BmgT120I	GGNCC	2 cut(s)	74, 148
BmiI	GGNNCC	2 cut(s)	76, 149
BmrFI	CCNGG	3 cut(s)	18, 41, 703
BmsI	GCATC	4 cut(s)	97, 665, 703, 747
BmtI	GCTAGC	1 cut(s)	740
BpmI	CTGGAG	2 cut(s)	197, 496
BpuEI	CTTGAG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	697
BsaAI	YACGTR	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 456
Bse1I	ACTGG	2 cut(s)	214, 410
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	3 cut(s)	18, 41, 703
BseCI	ATCGAT	1 cut(s)	697
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	2 cut(s)	168, 762
BseLI	CCNNNNNNNGG	2 cut(s)	284, 456
BseMI	GCAATG	1 cut(s)	731
BseNI	ACTGG	2 cut(s)	214, 410
BseXI	GCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	374
BshVI	ATCGAT	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	284, 456
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	698
Bsp68I	TCGCGA	1 cut(s)	374
BspDI	ATCGAT	1 cut(s)	697
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	2 cut(s)	76, 149
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	1 cut(s)	693
BspQI	GCTCTTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	214, 410
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	698
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	3 cut(s)	18, 41, 703
Bst4CI	ACNGT	4 cut(s)	180, 237, 519, 572
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	526
BstC8I	GCNNGC	4 cut(s)	197, 692, 738, 742
BstEII	GGTNACC	1 cut(s)	399
BstF5I	GGATG	2 cut(s)	168, 762
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	1 cut(s)	701
BstMBI	GATC	1 cut(s)	698
BstNI	CCWGG	3 cut(s)	18, 41, 703
BstNSI	RCATGY	1 cut(s)	694
BstPI	GGTNACC	1 cut(s)	399
BstSCI	CCNGG	3 cut(s)	16, 39, 701
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	417
Bsu15I	ATCGAT	1 cut(s)	697
BsuTUI	ATCGAT	1 cut(s)	697
BtrI	CACGTC	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	168, 762
BtsIMutI	CAGTG	2 cut(s)	233, 234
BtuMI	TCGCGA	1 cut(s)	374
Cac8I	GCNNGC	4 cut(s)	197, 692, 738, 742
Cfr13I	GGNCC	2 cut(s)	74, 148
ClaI	ATCGAT	1 cut(s)	697
CseI	GACGC	1 cut(s)	2
Csp6I	GTAC	1 cut(s)	55
CspCI	CAANNNNNGTGG	4 cut(s)	114, 149, 575, 610
CviAII	CATG	4 cut(s)	128, 159, 565, 691
CviJI	RGCY	7 cut(s)	31, 67, 195, 275, 649, 718, 740
CviKI_1	RGCY	7 cut(s)	31, 67, 195, 275, 649, 718, 740
CviQI	GTAC	1 cut(s)	55
DpnI	GATC	1 cut(s)	700
DpnII	GATC	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	74, 148
Eco53kI	GAGCTC	1 cut(s)	275
Eco91I	GGTNACC	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	399
EcoRII	CCWGG	3 cut(s)	16, 39, 701
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	131, 162, 568, 694
FaiI	YATR	9 cut(s)	100, 129, 160, 259, 397, 454, 503, 566, 692
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	4 cut(s)	127, 158, 564, 690
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	2 cut(s)	175, 769
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	2 cut(s)	71, 737
GluI	GCNGC	1 cut(s)	68
GsuI	CTGGAG	2 cut(s)	197, 496
HgaI	GACGC	1 cut(s)	2
Hin1II	CATG	4 cut(s)	131, 162, 568, 694
HinfI	GANTC	7 cut(s)	205, 220, 298, 432, 480, 506, 583
HphI	GGTGA	1 cut(s)	411
Hpy166II	GTNNAC	2 cut(s)	55, 537
Hpy188I	TCNGA	2 cut(s)	93, 316
Hpy188III	TCNNGA	5 cut(s)	285, 373, 475, 622, 660
Hpy8I	GTNNAC	2 cut(s)	55, 537
HpyCH4III	ACNGT	4 cut(s)	180, 237, 519, 572
HpyCH4IV	ACGT	3 cut(s)	308, 525, 593
HpyCH4V	TGCA	4 cut(s)	438, 656, 694, 744
HpySE526I	ACGT	3 cut(s)	308, 525, 593
Hsp92II	CATG	4 cut(s)	131, 162, 568, 694
Kzo9I	GATC	1 cut(s)	698
LguI	GCTCTTC	1 cut(s)	265
LmnI	GCTCC	2 cut(s)	280, 612
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	4 cut(s)	97, 665, 703, 747
MaeI	CTAG	2 cut(s)	71, 737
MaeII	ACGT	3 cut(s)	308, 525, 593
MaeIII	GTNAC	4 cut(s)	229, 399, 513, 727
MalI	GATC	1 cut(s)	700
MboI	GATC	1 cut(s)	698
MboII	GAAGA	3 cut(s)	282, 435, 652
MfeI	CAATTG	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	4 cut(s)	166, 254, 293, 671
MlyI	GAGTC	2 cut(s)	441, 489
MnlI	CCTC	5 cut(s)	128, 130, 357, 369, 570
Mph1103I	ATGCAT	1 cut(s)	696
MseI	TTAA	3 cut(s)	169, 353, 679
MslI	CAYNNNNRTG	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	31
MspR9I	CCNGG	3 cut(s)	18, 41, 703
MunI	CAATTG	1 cut(s)	293
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	3 cut(s)	18, 41, 703
MvnI	CGCG	1 cut(s)	374
NdeII	GATC	1 cut(s)	698
NheI	GCTAGC	1 cut(s)	736
NlaIII	CATG	4 cut(s)	131, 162, 568, 694
NlaIV	GGNNCC	2 cut(s)	76, 149
NmuCI	GTSAC	3 cut(s)	229, 399, 727
NruI	TCGCGA	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	1 cut(s)	694
PaeI	GCATGC	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	265
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	5 cut(s)	205, 220, 298, 506, 583
PfoI	TCCNGGA	2 cut(s)	16, 39
PkrI	GCNGC	1 cut(s)	69
PleI	GAGTC	2 cut(s)	440, 488
PpsI	GAGTC	2 cut(s)	440, 488
Ppu21I	YACGTR	1 cut(s)	526
PpuMI	RGGWCCY	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	277
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	3 cut(s)	16, 39, 701
PspEI	GGTNACC	1 cut(s)	399
PspGI	CCWGG	3 cut(s)	16, 39, 701
PspN4I	GGNNCC	2 cut(s)	76, 149
PspPI	GGNCC	2 cut(s)	74, 148
PspPPI	RGGWCCY	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	374
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	265
SaqAI	TTAA	3 cut(s)	169, 353, 679
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	1 cut(s)	698
Sau96I	GGNCC	2 cut(s)	74, 148
SchI	GAGTC	2 cut(s)	441, 489
ScrFI	CCNGG	3 cut(s)	18, 41, 703
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	4 cut(s)	97, 665, 703, 747
SinI	GGWCC	2 cut(s)	74, 148
SmiMI	CAYNNNNRTG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	4 cut(s)	166, 254, 293, 671
SspMI	CTAG	2 cut(s)	71, 737
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	16, 39, 701
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	4 cut(s)	180, 237, 519, 572
TaiI	ACGT	3 cut(s)	311, 528, 596
TaqI	TCGA	3 cut(s)	430, 659, 697
TasI	AATT	4 cut(s)	166, 254, 293, 671
TfiI	GAWTC	5 cut(s)	205, 220, 298, 506, 583
Tru1I	TTAA	3 cut(s)	169, 353, 679
Tru9I	TTAA	3 cut(s)	169, 353, 679
TscAI	CASTG	2 cut(s)	234, 240
TseFI	GTSAC	3 cut(s)	229, 399, 727
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	3 cut(s)	229, 399, 727
TspDTI	ATGAA	3 cut(s)	77, 179, 659
TspRI	CASTG	2 cut(s)	234, 240
VpaK11BI	GGWCC	2 cut(s)	74, 148
XceI	RCATGY	1 cut(s)	694
XspI	CTAG	2 cut(s)	71, 737
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.