Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000215

Orthogroup ID

OG0010368

Physical Location & Seq

Genomic Coordinates Reverse (-)

182014 .. 183411

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGATGGGCAGCAGGGGGAGTAGAGAAGATGATGGAGGAGCGGGGAAGGGTTTGTTGTGGAAGCTTCCAATCCTCAGAACCCAGCAACTAGGGAAGGTGGGTCCCGCCTTTGGCCTCGGCGCTGGCTGCGGCTTAGGTTTCGGCATCGGCCTCCTCGGCGGCGCAGGATTTGGTCCTGGGATTCCTGGCTTGCAAGTTGGCTTTGGCCTTGGTGCTGGATGCGGGGTCGGCTTAGGATTCGGCTACGGTGTCGGAAGGGGCATTGCCTACGATGACAATCGCAGATACTCTAATGTAGGCAACCTTTTTCGTGGTGAAAATGTCGGCATTTCTCCTGCTACTCAGGATGATATTGGTGCACTTGTTGAGGAGCTTGTTGATAATACGAAGAAACTTGTCAGAGCTACTACAAGAGAGATGGACAAGTGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

14.91

Weight (kDa)

9.34

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10330
fragaria_vesca	FvH4_2g00130
malus_domestica	MD00G1103300.v1.1 MD02G1202800.v1.1 MD05G1000400.v1.1 MD11G1234100.v1.1
prunus_persica	Prupe.8G001100_v2.0.a1
pyrus_communis	pycom10g00020 pycom215g00060
rosa_chinensis	RchiOBHm_Chr6g0249391
rosa_laevigata	RLG00000015584 RLG00000026303
rosa_multiflora	Rmu_sc0000278.1_g000004 Rmu_sc0018750.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217770
rosa_rugosa	Rorug05G0491900
rosa_samantha	Rh6AG001700 Rh6BG008400 Rh6CG000700 Rh6DG000800
rosa_wichuraiana	Rw6G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	41
AciI	CCGC	5 cut(s)	41, 105, 129, 159, 222
AfiI	CCNNNNNNNGG	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	175, 184
AluBI	AGCT	3 cut(s)	64, 373, 404
AluI	AGCT	3 cut(s)	64, 373, 404
Alw21I	GWGCWC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	357
AoxI	GGCC	3 cut(s)	112, 148, 205
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	9, 126
AspLEI	GCGC	2 cut(s)	122, 164
AspS9I	GGNCC	2 cut(s)	101, 173
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	101, 173
BaeGI	GKGCMC	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	2 cut(s)	21, 113
BccI	CCATC	2 cut(s)	26, 412
BciT130I	CCWGG	2 cut(s)	177, 186
BfaI	CTAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	4 cut(s)	10, 127, 130, 160
BlsI	GCNGC	4 cut(s)	11, 128, 131, 161
Bme1390I	CCNGG	2 cut(s)	177, 186
Bme18I	GGWCC	2 cut(s)	101, 173
BmgT120I	GGNCC	2 cut(s)	101, 173
BmiI	GGNNCC	2 cut(s)	102, 103
BmrFI	CCNGG	2 cut(s)	177, 186
BmsI	GCATC	2 cut(s)	153, 209
Bpu10I	CCTNAGC	2 cut(s)	133, 232
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	115, 154, 176, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	177, 186
BseDI	CCNNGG	4 cut(s)	115, 154, 176, 208
BseGI	GGATG	2 cut(s)	224, 352
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	88, 356
BseRI	GAGGAG	3 cut(s)	51, 143, 383
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	2 cut(s)	21, 113
BseYI	CCCAGC	1 cut(s)	81
BshFI	GGCC	3 cut(s)	114, 150, 207
BsiHKAI	GWGCWC	1 cut(s)	361
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	3 cut(s)	114, 150, 207
Bsp1286I	GDGCHC	1 cut(s)	361
BspACI	CCGC	5 cut(s)	41, 105, 129, 159, 222
BspANI	GGCC	3 cut(s)	114, 150, 207
BspCNI	CTCAG	2 cut(s)	87, 355
BspLI	GGNNCC	2 cut(s)	102, 103
BsrBI	CCGCTC	1 cut(s)	41
BsrDI	GCAATG	1 cut(s)	261
BssECI	CCNNGG	4 cut(s)	115, 154, 176, 208
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	177, 186
Bst4CI	ACNGT	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	124, 191
BstDEI	CTNAG	4 cut(s)	74, 133, 232, 342
BstF5I	GGATG	2 cut(s)	224, 352
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 164
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 156, 228
BstNI	CCWGG	2 cut(s)	177, 186
BstSCI	CCNGG	2 cut(s)	175, 184
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	21, 113
BsuRI	GGCC	3 cut(s)	114, 150, 207
BtsCI	GGATG	2 cut(s)	224, 352
Cac8I	GCNNGC	2 cut(s)	124, 191
CfoI	GCGC	2 cut(s)	122, 164
Cfr13I	GGNCC	2 cut(s)	101, 173
DdeI	CTNAG	4 cut(s)	74, 133, 232, 342
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	101, 173
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	175, 184
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaqI	GGGAC	1 cut(s)	87
FauI	CCCGC	3 cut(s)	34, 112, 215
Fnu4HI	GCNGC	4 cut(s)	10, 127, 130, 160
FokI	GGATG	2 cut(s)	231, 359
Fsp4HI	GCNGC	4 cut(s)	10, 127, 130, 160
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	2 cut(s)	121, 163
GluI	GCNGC	4 cut(s)	10, 127, 130, 160
GsaI	CCCAGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	3 cut(s)	114, 150, 207
HhaI	GCGC	2 cut(s)	122, 164
Hin6I	GCGC	2 cut(s)	120, 162
HinP1I	GCGC	2 cut(s)	120, 162
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	181, 237
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	77, 254, 401
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	3 cut(s)	40, 88, 249
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	193, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 156, 228
HpyF3I	CTNAG	4 cut(s)	74, 133, 232, 342
HspAI	GCGC	2 cut(s)	120, 162
KflI	GGGWCCC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	38, 370
Lsp1109I	GCAGC	2 cut(s)	21, 113
LweI	GCATC	2 cut(s)	153, 209
MaeI	CTAG	1 cut(s)	89
MbiI	CCGCTC	1 cut(s)	41
MboII	GAAGA	2 cut(s)	38, 400
MhlI	GDGCHC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	29, 83, 125, 161, 164, 361
MspR9I	CCNGG	2 cut(s)	177, 186
MvaI	CCWGG	2 cut(s)	177, 186
MwoI	GCNNNNNNNGC	3 cut(s)	126, 156, 228
NlaIV	GGNNCC	2 cut(s)	102, 103
NmeAIII	GCCGAG	2 cut(s)	96, 135
PfeI	GAWTC	2 cut(s)	181, 237
PkrI	GCNGC	4 cut(s)	11, 128, 131, 161
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	2 cut(s)	175, 184
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	175, 184
PspN4I	GGNNCC	2 cut(s)	102, 103
PspPI	GGNCC	2 cut(s)	101, 173
PspPPI	RGGWCCY	1 cut(s)	101
SatI	GCNGC	4 cut(s)	10, 127, 130, 160
Sau96I	GGNCC	2 cut(s)	101, 173
ScrFI	CCNGG	2 cut(s)	177, 186
SduI	GDGCHC	1 cut(s)	361
SetI	ASST	6 cut(s)	66, 99, 139, 306, 375, 406
SfaNI	GCATC	2 cut(s)	153, 209
SinI	GGWCC	2 cut(s)	101, 173
SsiI	CCGC	5 cut(s)	41, 105, 129, 159, 222
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	175, 184
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	248
TauI	GCSGC	2 cut(s)	132, 162
TfiI	GAWTC	2 cut(s)	181, 237
TseI	GCWGC	2 cut(s)	9, 126
VneI	GTGCAC	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	101, 173
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.