metalloendopeptidase activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G42390 AT5G42390 |
| fragaria_vesca | FvH4_1g30291 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 FvH4_7g03800 |
| malus_domestica | MD00G1159400.v1.1 MD00G1204700.v1.1 |
| prunus_persica | Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 Prupe.7G271900_v2.0.a1 |
| pyrus_communis | pycom290g00010 |
| rosa_chinensis | RchiOBHm_Chr3g0491051 |
| rosa_laevigata | RLG00000022866 |
| rosa_multiflora | Rmu_co8044182.1_g000001 Rmu_ssc0000386.1_g000043 |
| rosa_roxburghii | Rroxscaffold_5G00351210 Rroxscaffold_6G00393270 |
| rosa_rugosa | Rorug03G0245500 Rorug04G0069600 Rorug04G0069700 Rorug04G0070700 Rorug04G0070800 |
| rosa_samantha | Rh3AG295700 Rh3BG331900 Rh3CG329000 Rh3DG329500 |
| rosa_wichuraiana | Rw3G026110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2952, 3248 |
| AarI | CACCTGC | 1 cut(s) | 1264 |
| Acc36I | ACCTGC | 3 cut(s) | 191, 1264, 2470 |
| AccB1I | GGYRCC | 2 cut(s) | 1970, 2167 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1698 |
| AccBSI | CCGCTC | 1 cut(s) | 2752 |
| AccI | GTMKAC | 1 cut(s) | 184 |
| AccII | CGCG | 1 cut(s) | 1008 |
| AccIII | TCCGGA | 1 cut(s) | 1575 |
| AciI | CCGC | 9 cut(s) | 5, 91, 656, 1817, 2365, 2379, 2588, 2752, 3466 |
| AclWI | GGATC | 4 cut(s) | 703, 1638, 1905, 2294 |
| AcoI | YGGCCR | 1 cut(s) | 6 |
| AcuI | CTGAAG | 1 cut(s) | 3732 |
| AcyI | GRCGYC | 2 cut(s) | 181, 1971 |
| AdeI | CACNNNGTG | 1 cut(s) | 365 |
| AfaI | GTAC | 9 cut(s) | 216, 484, 894, 1136, 1660, 1725, 2433, 2613, 3665 |
| AfeI | AGCGCT | 1 cut(s) | 2705 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 410, 1698, 3376 |
| AflIII | ACRYGT | 1 cut(s) | 745 |
| AjnI | CCWGG | 7 cut(s) | 176, 289, 488, 535, 1411, 3234, 3739 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1200, 1232, 2114, 2146 |
| Alw21I | GWGCWC | 2 cut(s) | 124, 3691 |
| Alw26I | GTCTC | 5 cut(s) | 60, 256, 1235, 2997, 3270 |
| AlwI | GGATC | 4 cut(s) | 703, 1638, 1905, 2294 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 275, 1250, 3050 |
| Aor13HI | TCCGGA | 1 cut(s) | 1575 |
| Aor51HI | AGCGCT | 1 cut(s) | 2705 |
| AoxI | GGCC | 6 cut(s) | 6, 127, 457, 1228, 3046, 3782 |
| ApaI | GGGCCC | 1 cut(s) | 461 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 319, 351 |
| AseI | ATTAAT | 1 cut(s) | 1581 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1327, 1461 |
| AspLEI | GCGC | 5 cut(s) | 630, 1879, 1973, 2220, 2706 |
| AspS9I | GGNCC | 6 cut(s) | 128, 457, 458, 2682, 3047, 3468 |
| AsuC2I | CCSGG | 1 cut(s) | 52 |
| AsuHPI | GGTGA | 8 cut(s) | 887, 914, 1535, 1778, 2080, 2087, 2495, 3662 |
| AvaII | GGWCC | 2 cut(s) | 2682, 3468 |
| BaeGI | GKGCMC | 2 cut(s) | 461, 1299 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1582, 1615 |
| BanI | GGYRCC | 2 cut(s) | 1970, 2167 |
| BanII | GRGCYC | 4 cut(s) | 461, 799, 3234, 3691 |
| BauI | CACGAG | 3 cut(s) | 123, 942, 1913 |
| BbsI | GAAGAC | 1 cut(s) | 1830 |
| Bbv12I | GWGCWC | 2 cut(s) | 124, 3691 |
| BceAI | ACGGC | 2 cut(s) | 102, 974 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1361, 1395 |
| BciT130I | CCWGG | 7 cut(s) | 178, 291, 490, 537, 1413, 3236, 3741 |
| BciVI | GTATCC | 1 cut(s) | 3163 |
| BclI | TGATCA | 2 cut(s) | 1342, 3634 |
| BcnI | CCSGG | 1 cut(s) | 52 |
| BcoDI | GTCTC | 5 cut(s) | 60, 256, 1235, 2997, 3270 |
| BfaI | CTAG | 6 cut(s) | 312, 521, 1232, 1263, 1284, 3255 |
| BfmI | CTRYAG | 4 cut(s) | 198, 346, 996, 2025 |
| BfoI | RGCGCY | 2 cut(s) | 1974, 2707 |
| BfuAI | ACCTGC | 3 cut(s) | 191, 1264, 2470 |
| BfuI | GTATCC | 1 cut(s) | 3163 |
| BglII | AGATCT | 2 cut(s) | 3088, 3580 |
| BlpI | GCTNAGC | 1 cut(s) | 1052 |
| Bme1390I | CCNGG | 8 cut(s) | 52, 178, 291, 490, 537, 1413, 3236, 3741 |
| Bme18I | GGWCC | 2 cut(s) | 2682, 3468 |
| BmgT120I | GGNCC | 6 cut(s) | 128, 457, 458, 2682, 3047, 3468 |
| BmiI | GGNNCC | 9 cut(s) | 459, 1064, 1497, 1972, 2139, 2169, 2911, 3233, 3470 |
| BmrFI | CCNGG | 8 cut(s) | 52, 178, 291, 490, 537, 1413, 3236, 3741 |
| BmsI | GCATC | 8 cut(s) | 889, 1777, 1864, 2629, 2800, 3118, 3228, 3582 |
| BpiI | GAAGAC | 1 cut(s) | 1830 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1946, 1978 |
| BpmI | CTGGAG | 3 cut(s) | 527, 558, 3705 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2151 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1052 |
| BpuEI | CTTGAG | 5 cut(s) | 1727, 2183, 2455, 2636, 3675 |
| BpuMI | CCSGG | 1 cut(s) | 52 |
| Bsa29I | ATCGAT | 1 cut(s) | 702 |
| BsaBI | GATNNNNATC | 1 cut(s) | 876 |
| BsaHI | GRCGYC | 2 cut(s) | 181, 1971 |
| BsaJI | CCNNGG | 6 cut(s) | 453, 757, 1974, 2532, 3196, 3554 |
| BsaWI | WCCGGW | 1 cut(s) | 1575 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 255, 285, 2442, 2472 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 410, 1698, 3376 |
| Bse1I | ACTGG | 6 cut(s) | 269, 900, 1018, 1231, 1324, 2596 |
| Bse3DI | GCAATG | 4 cut(s) | 1284, 2739, 2777, 2792 |
| Bse8I | GATNNNNATC | 1 cut(s) | 876 |
| BseAI | TCCGGA | 1 cut(s) | 1575 |
| BseBI | CCWGG | 7 cut(s) | 178, 291, 490, 537, 1413, 3236, 3741 |
| BseCI | ATCGAT | 1 cut(s) | 702 |
| BseDI | CCNNGG | 6 cut(s) | 453, 757, 1974, 2532, 3196, 3554 |
| BseJI | GATNNNNATC | 1 cut(s) | 876 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 410, 1698, 3376 |
| BseMI | GCAATG | 4 cut(s) | 1284, 2739, 2777, 2792 |
| BseMII | CTCAG | 7 cut(s) | 2073, 2142, 2883, 3008, 3188, 3231, 3483 |
| BseNI | ACTGG | 6 cut(s) | 269, 900, 1018, 1231, 1324, 2596 |
| BseRI | GAGGAG | 2 cut(s) | 2888, 3161 |
| BseSI | GKGCMC | 2 cut(s) | 461, 1299 |
| BseYI | CCCAGC | 1 cut(s) | 1879 |
| BsgI | GTGCAG | 3 cut(s) | 1236, 1998, 3036 |
| Bsh1236I | CGCG | 1 cut(s) | 1008 |
| Bsh1285I | CGRYCG | 1 cut(s) | 337 |
| BshFI | GGCC | 6 cut(s) | 8, 129, 459, 1230, 3048, 3784 |
| BshNI | GGYRCC | 2 cut(s) | 1970, 2167 |
| BshVI | ATCGAT | 1 cut(s) | 702 |
| BsiEI | CGRYCG | 1 cut(s) | 337 |
| BsiHKAI | GWGCWC | 2 cut(s) | 124, 3691 |
| BsiSI | CCGG | 2 cut(s) | 52, 1576 |
| BslFI | GGGAC | 4 cut(s) | 17, 34, 802, 2876 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 410, 1698, 3376 |
| BsmAI | GTCTC | 5 cut(s) | 60, 256, 1235, 2997, 3270 |
| BsmBI | CGTCTC | 1 cut(s) | 60 |
| BsmFI | GGGAC | 4 cut(s) | 17, 34, 802, 2876 |
| BsmI | GAATGC | 3 cut(s) | 1036, 2586, 2950 |
| BsnI | GGCC | 6 cut(s) | 8, 129, 459, 1230, 3048, 3784 |
| Bsp120I | GGGCCC | 1 cut(s) | 457 |
| Bsp1286I | GDGCHC | 6 cut(s) | 124, 461, 799, 1299, 3234, 3691 |
| Bsp13I | TCCGGA | 1 cut(s) | 1575 |
| Bsp1407I | TGTACA | 2 cut(s) | 214, 1723 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1052 |
| BspACI | CCGC | 9 cut(s) | 5, 91, 656, 1817, 2365, 2379, 2588, 2752, 3466 |
| BspANI | GGCC | 6 cut(s) | 8, 129, 459, 1230, 3048, 3784 |
| BspCNI | CTCAG | 7 cut(s) | 2074, 2143, 2882, 3007, 3187, 3232, 3484 |
| BspDI | ATCGAT | 1 cut(s) | 702 |
| BspEI | TCCGGA | 1 cut(s) | 1575 |
| BspFNI | CGCG | 1 cut(s) | 1008 |
| BspLI | GGNNCC | 9 cut(s) | 459, 1064, 1497, 1972, 2139, 2169, 2911, 3233, 3470 |
| BspMAI | CTGCAG | 2 cut(s) | 202, 2029 |
| BspMI | ACCTGC | 3 cut(s) | 191, 1264, 2470 |
| BspPI | GGATC | 4 cut(s) | 703, 1638, 1905, 2294 |
| BspQI | GCTCTTC | 1 cut(s) | 1074 |
| BspT107I | GGYRCC | 2 cut(s) | 1970, 2167 |
| BsrBI | CCGCTC | 1 cut(s) | 2752 |
| BsrDI | GCAATG | 4 cut(s) | 1284, 2739, 2777, 2792 |
| BsrGI | TGTACA | 2 cut(s) | 214, 1723 |
| BsrI | ACTGG | 6 cut(s) | 269, 900, 1018, 1231, 1324, 2596 |
| BssECI | CCNNGG | 6 cut(s) | 453, 757, 1974, 2532, 3196, 3554 |
| BssNI | GRCGYC | 2 cut(s) | 181, 1971 |
| BssSI | CACGAG | 3 cut(s) | 123, 942, 1913 |
| BssT1I | CCWWGG | 3 cut(s) | 757, 1974, 3554 |
| Bst2BI | CACGAG | 3 cut(s) | 123, 942, 1913 |
| Bst2UI | CCWGG | 7 cut(s) | 178, 291, 490, 537, 1413, 3236, 3741 |
| Bst6I | CTCTTC | 4 cut(s) | 1074, 1541, 1947, 2025 |
| BstACI | GRCGYC | 2 cut(s) | 181, 1971 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2221, 3041, 3050 |
| BstAUI | TGTACA | 2 cut(s) | 214, 1723 |
| BstC8I | GCNNGC | 7 cut(s) | 424, 963, 2222, 2586, 3046, 3400, 3540 |
| BstDSI | CCRYGG | 2 cut(s) | 453, 3196 |
| BstFNI | CGCG | 1 cut(s) | 1008 |
| BstH2I | RGCGCY | 2 cut(s) | 1974, 2707 |
| BstHHI | GCGC | 5 cut(s) | 630, 1879, 1973, 2220, 2706 |
| BstMAI | GTCTC | 5 cut(s) | 60, 256, 1235, 2997, 3270 |
| BstMCI | CGRYCG | 1 cut(s) | 337 |
| BstNI | CCWGG | 7 cut(s) | 178, 291, 490, 537, 1413, 3236, 3741 |
| BstNSI | RCATGY | 6 cut(s) | 434, 749, 2063, 2224, 3033, 3402 |
| BstSCI | CCNGG | 8 cut(s) | 50, 176, 289, 488, 535, 1411, 3234, 3739 |
| BstSFI | CTRYAG | 4 cut(s) | 198, 346, 996, 2025 |
| BstSLI | GKGCMC | 2 cut(s) | 461, 1299 |
| BstUI | CGCG | 1 cut(s) | 1008 |
| BstV2I | GAAGAC | 1 cut(s) | 1830 |
| BstX2I | RGATCY | 2 cut(s) | 3088, 3580 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1981, 2698, 3063 |
| BstYI | RGATCY | 2 cut(s) | 3088, 3580 |
| Bsu15I | ATCGAT | 1 cut(s) | 702 |
| BsuI | GTATCC | 1 cut(s) | 3163 |
| BsuRI | GGCC | 6 cut(s) | 8, 129, 459, 1230, 3048, 3784 |
| BsuTUI | ATCGAT | 1 cut(s) | 702 |
| BtgI | CCRYGG | 2 cut(s) | 453, 3196 |
| BtsI | GCAGTG | 1 cut(s) | 2820 |
| BtsIMutI | CAGTG | 4 cut(s) | 276, 813, 837, 2820 |
| BveI | ACCTGC | 3 cut(s) | 191, 1264, 2470 |
| Cac8I | GCNNGC | 7 cut(s) | 424, 963, 2222, 2586, 3046, 3400, 3540 |
| CaiI | CAGNNNCTG | 3 cut(s) | 275, 1250, 3050 |
| CfoI | GCGC | 5 cut(s) | 630, 1879, 1973, 2220, 2706 |
| Cfr13I | GGNCC | 6 cut(s) | 128, 457, 458, 2682, 3047, 3468 |
| ClaI | ATCGAT | 1 cut(s) | 702 |
| CseI | GACGC | 1 cut(s) | 170 |
| Csp6I | GTAC | 9 cut(s) | 215, 483, 893, 1135, 1659, 1724, 2432, 2612, 3664 |
| CviQI | GTAC | 9 cut(s) | 215, 483, 893, 1135, 1659, 1724, 2432, 2612, 3664 |
| DinI | GGCGCC | 1 cut(s) | 1972 |
| DraI | TTTAAA | 1 cut(s) | 1360 |
| DraIII | CACNNNGTG | 1 cut(s) | 365 |
| EaeI | YGGCCR | 1 cut(s) | 6 |
| Eam1104I | CTCTTC | 4 cut(s) | 1074, 1541, 1947, 2025 |
| EarI | CTCTTC | 4 cut(s) | 1074, 1541, 1947, 2025 |
| EciI | GGCGGA | 1 cut(s) | 645 |
| Ecl136II | GAGCTC | 1 cut(s) | 3689 |
| Eco130I | CCWWGG | 3 cut(s) | 757, 1974, 3554 |
| Eco24I | GRGCYC | 4 cut(s) | 461, 799, 3234, 3691 |
| Eco32I | GATATC | 1 cut(s) | 2184 |
| Eco47I | GGWCC | 2 cut(s) | 2682, 3468 |
| Eco47III | AGCGCT | 1 cut(s) | 2705 |
| Eco53kI | GAGCTC | 1 cut(s) | 3689 |
| Eco57I | CTGAAG | 1 cut(s) | 3732 |
| EcoICRI | GAGCTC | 1 cut(s) | 3689 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3047 |
| EcoRI | GAATTC | 2 cut(s) | 97, 2552 |
| EcoRII | CCWGG | 7 cut(s) | 176, 289, 488, 535, 1411, 3234, 3739 |
| EcoRV | GATATC | 1 cut(s) | 2184 |
| EcoT14I | CCWWGG | 3 cut(s) | 757, 1974, 3554 |
| EcoT22I | ATGCAT | 2 cut(s) | 2644, 3674 |
| EcoT38I | GRGCYC | 4 cut(s) | 461, 799, 3234, 3691 |
| EgeI | GGCGCC | 1 cut(s) | 1972 |
| EheI | GGCGCC | 1 cut(s) | 1972 |
| ErhI | CCWWGG | 3 cut(s) | 757, 1974, 3554 |
| Esp3I | CGTCTC | 1 cut(s) | 60 |
| FaqI | GGGAC | 4 cut(s) | 17, 34, 802, 2876 |
| FauNDI | CATATG | 5 cut(s) | 735, 1519, 2607, 3295, 3631 |
| FbaI | TGATCA | 2 cut(s) | 1342, 3634 |
| FblI | GTMKAC | 1 cut(s) | 184 |
| FriOI | GRGCYC | 4 cut(s) | 461, 799, 3234, 3691 |
| FspBI | CTAG | 6 cut(s) | 312, 521, 1232, 1263, 1284, 3255 |
| GlaI | GCGC | 5 cut(s) | 629, 1878, 1972, 2219, 2705 |
| GsaI | CCCAGC | 1 cut(s) | 1883 |
| GsuI | CTGGAG | 3 cut(s) | 527, 558, 3705 |
| HaeII | RGCGCY | 2 cut(s) | 1974, 2707 |
| HaeIII | GGCC | 6 cut(s) | 8, 129, 459, 1230, 3048, 3784 |
| HapII | CCGG | 2 cut(s) | 52, 1576 |
| HgaI | GACGC | 1 cut(s) | 170 |
| HhaI | GCGC | 5 cut(s) | 630, 1879, 1973, 2220, 2706 |
| Hin1I | GRCGYC | 2 cut(s) | 181, 1971 |
| Hin6I | GCGC | 5 cut(s) | 628, 1877, 1971, 2218, 2704 |
| HinP1I | GCGC | 5 cut(s) | 628, 1877, 1971, 2218, 2704 |
| HincII | GTYRAC | 2 cut(s) | 1012, 1960 |
| HindII | GTYRAC | 2 cut(s) | 1012, 1960 |
| HindIII | AAGCTT | 3 cut(s) | 1049, 1301, 2695 |
| HpaII | CCGG | 2 cut(s) | 52, 1576 |
| HphI | GGTGA | 8 cut(s) | 887, 914, 1535, 1778, 2080, 2087, 2495, 3662 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 342, 345 |
| HpyAV | CCTTC | 9 cut(s) | 220, 1641, 1646, 1731, 2239, 2800, 2988, 3482, 3553 |
| HpyCH4IV | ACGT | 2 cut(s) | 30, 772 |
| HpySE526I | ACGT | 2 cut(s) | 30, 772 |
| Hsp92I | GRCGYC | 2 cut(s) | 181, 1971 |
| HspAI | GCGC | 5 cut(s) | 628, 1877, 1971, 2218, 2704 |
| KasI | GGCGCC | 1 cut(s) | 1970 |
| Kpn2I | TCCGGA | 1 cut(s) | 1575 |
| Ksp22I | TGATCA | 2 cut(s) | 1342, 3634 |
| LguI | GCTCTTC | 1 cut(s) | 1074 |
| LmnI | GCTCC | 7 cut(s) | 517, 1264, 2476, 2701, 3148, 3237, 3686 |
| LweI | GCATC | 8 cut(s) | 889, 1777, 1864, 2629, 2800, 3118, 3228, 3582 |
| MaeI | CTAG | 6 cut(s) | 312, 521, 1232, 1263, 1284, 3255 |
| MaeII | ACGT | 2 cut(s) | 30, 772 |
| MbiI | CCGCTC | 1 cut(s) | 2752 |
| MfeI | CAATTG | 3 cut(s) | 1620, 2660, 3638 |
| MflI | RGATCY | 2 cut(s) | 3088, 3580 |
| MhlI | GDGCHC | 6 cut(s) | 124, 461, 799, 1299, 3234, 3691 |
| Mly113I | GGCGCC | 1 cut(s) | 1971 |
| MlyI | GAGTC | 6 cut(s) | 1634, 2414, 2534, 2894, 3107, 3272 |
| MmeI | TCCRAC | 3 cut(s) | 197, 1962, 3432 |
| Mph1103I | ATGCAT | 2 cut(s) | 2644, 3674 |
| MroI | TCCGGA | 1 cut(s) | 1575 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1327, 1461 |
| MslI | CAYNNNNRTG | 3 cut(s) | 435, 3126, 3224 |
| MspA1I | CMGCKG | 1 cut(s) | 2393 |
| MspI | CCGG | 2 cut(s) | 52, 1576 |
| MspR9I | CCNGG | 8 cut(s) | 52, 178, 291, 490, 537, 1413, 3236, 3741 |
| MunI | CAATTG | 3 cut(s) | 1620, 2660, 3638 |
| Mva1269I | GAATGC | 3 cut(s) | 1036, 2586, 2950 |
| MvaI | CCWGG | 7 cut(s) | 178, 291, 490, 537, 1413, 3236, 3741 |
| MvnI | CGCG | 1 cut(s) | 1008 |
| NarI | GGCGCC | 1 cut(s) | 1971 |
| NciI | CCSGG | 1 cut(s) | 52 |
| NdeI | CATATG | 5 cut(s) | 735, 1519, 2607, 3295, 3631 |
| NlaIV | GGNNCC | 9 cut(s) | 459, 1064, 1497, 1972, 2139, 2169, 2911, 3233, 3470 |
| NmuCI | GTSAC | 6 cut(s) | 271, 1404, 1523, 1637, 1663, 2257 |
| NsiI | ATGCAT | 2 cut(s) | 2644, 3674 |
| NspI | RCATGY | 6 cut(s) | 434, 749, 2063, 2224, 3033, 3402 |
| PaeI | GCATGC | 2 cut(s) | 2224, 3402 |
| PaqCI | CACCTGC | 1 cut(s) | 1264 |
| PciI | ACATGT | 1 cut(s) | 745 |
| PciSI | GCTCTTC | 1 cut(s) | 1074 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 121 |
| PctI | GAATGC | 3 cut(s) | 1036, 2586, 2950 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1327, 1461 |
| PfeI | GAWTC | 8 cut(s) | 866, 967, 1462, 2500, 3334, 3656, 3722, 3744 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1698 |
| PfoI | TCCNGGA | 5 cut(s) | 50, 289, 535, 1411, 3739 |
| PleI | GAGTC | 6 cut(s) | 1634, 2413, 2533, 2893, 3106, 3272 |
| PluTI | GGCGCC | 1 cut(s) | 1974 |
| PpsI | GAGTC | 6 cut(s) | 1634, 2413, 2533, 2893, 3106, 3272 |
| PscI | ACATGT | 1 cut(s) | 745 |
| PshBI | ATTAAT | 1 cut(s) | 1581 |
| PsiI | TTATAA | 2 cut(s) | 2952, 3248 |
| Psp124BI | GAGCTC | 1 cut(s) | 3691 |
| Psp6I | CCWGG | 7 cut(s) | 176, 289, 488, 535, 1411, 3234, 3739 |
| PspFI | CCCAGC | 1 cut(s) | 1879 |
| PspGI | CCWGG | 7 cut(s) | 176, 289, 488, 535, 1411, 3234, 3739 |
| PspN4I | GGNNCC | 9 cut(s) | 459, 1064, 1497, 1972, 2139, 2169, 2911, 3233, 3470 |
| PspOMI | GGGCCC | 1 cut(s) | 457 |
| PspPI | GGNCC | 6 cut(s) | 128, 457, 458, 2682, 3047, 3468 |
| PstI | CTGCAG | 2 cut(s) | 202, 2029 |
| PstNI | CAGNNNCTG | 3 cut(s) | 275, 1250, 3050 |
| PsuI | RGATCY | 2 cut(s) | 3088, 3580 |
| PvuII | CAGCTG | 1 cut(s) | 2393 |
| RsaI | GTAC | 9 cut(s) | 216, 484, 894, 1136, 1660, 1725, 2433, 2613, 3665 |
| RsaNI | GTAC | 9 cut(s) | 215, 483, 893, 1135, 1659, 1724, 2432, 2612, 3664 |
| RseI | CAYNNNNRTG | 3 cut(s) | 435, 3126, 3224 |
| SacI | GAGCTC | 1 cut(s) | 3691 |
| SapI | GCTCTTC | 1 cut(s) | 1074 |
| Sau96I | GGNCC | 6 cut(s) | 128, 457, 458, 2682, 3047, 3468 |
| SchI | GAGTC | 6 cut(s) | 1634, 2414, 2534, 2894, 3107, 3272 |
| ScrFI | CCNGG | 8 cut(s) | 52, 178, 291, 490, 537, 1413, 3236, 3741 |
| SduI | GDGCHC | 6 cut(s) | 124, 461, 799, 1299, 3234, 3691 |
| SfaNI | GCATC | 8 cut(s) | 889, 1777, 1864, 2629, 2800, 3118, 3228, 3582 |
| SfcI | CTRYAG | 4 cut(s) | 198, 346, 996, 2025 |
| SfoI | GGCGCC | 1 cut(s) | 1972 |
| SinI | GGWCC | 2 cut(s) | 2682, 3468 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 435, 3126, 3224 |
| SmlI | CTYRAG | 5 cut(s) | 1742, 2162, 2470, 2615, 3690 |
| SmoI | CTYRAG | 5 cut(s) | 1742, 2162, 2470, 2615, 3690 |
| SphI | GCATGC | 2 cut(s) | 2224, 3402 |
| SsiI | CCGC | 9 cut(s) | 5, 91, 656, 1817, 2365, 2379, 2588, 2752, 3466 |
| SspDI | GGCGCC | 1 cut(s) | 1970 |
| SspI | AATATT | 1 cut(s) | 1554 |
| SspMI | CTAG | 6 cut(s) | 312, 521, 1232, 1263, 1284, 3255 |
| SstI | GAGCTC | 1 cut(s) | 3691 |
| StyD4I | CCNGG | 8 cut(s) | 50, 176, 289, 488, 535, 1411, 3234, 3739 |
| StyI | CCWWGG | 3 cut(s) | 757, 1974, 3554 |
| TaiI | ACGT | 2 cut(s) | 33, 775 |
| TaqI | TCGA | 6 cut(s) | 604, 702, 799, 2921, 3309, 3717 |
| TaqII | GACCGA | 1 cut(s) | 2670 |
| TatI | WGTACW | 6 cut(s) | 214, 482, 892, 1658, 1723, 3663 |
| TauI | GCSGC | 5 cut(s) | 8, 94, 1820, 2368, 2591 |
| TfiI | GAWTC | 8 cut(s) | 866, 967, 1462, 2500, 3334, 3656, 3722, 3744 |
| TscAI | CASTG | 4 cut(s) | 276, 820, 837, 2820 |
| TseFI | GTSAC | 6 cut(s) | 271, 1404, 1523, 1637, 1663, 2257 |
| Tsp45I | GTSAC | 6 cut(s) | 271, 1404, 1523, 1637, 1663, 2257 |
| TspGWI | ACGGA | 8 cut(s) | 32, 36, 876, 1327, 2546, 2757, 3032, 3185 |
| TspRI | CASTG | 4 cut(s) | 276, 820, 837, 2820 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1698 |
| VpaK11BI | GGWCC | 2 cut(s) | 2682, 3468 |
| VspI | ATTAAT | 1 cut(s) | 1581 |
| XceI | RCATGY | 6 cut(s) | 434, 749, 2063, 2224, 3033, 3402 |
| XmiI | GTMKAC | 1 cut(s) | 184 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1327, 1461 |
| XspI | CTAG | 6 cut(s) | 312, 521, 1232, 1263, 1284, 3255 |
| Zsp2I | ATGCAT | 2 cut(s) | 2644, 3674 |