pycom49g00070
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_49
OG0011692
Physical Location & Seq
Forward (+)
122053 .. 123859
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1446 bp
ATGGATCCGTCGATGGAAGCACAAACAGAAACAGGCATGGTGGTGAATAGAGGAATATCAGACGAGCTCAAGGGGTTGCCTCCTGGTTTTCGGTTTCATCCCACGGATGAAGAAATCATAACTAGCTATCTCATAAAGAAGGTCATCAACAGCAGCTTCGAAGCTGTTGCAATCGGCGAAGTTGATTTGAACAAGTGCGAACCTTGGGATTTGCCTAAAGAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTTTGCCAGAGAGACAGGAAGTATCCGACGGGGATGAGGACGAATCGAGCGACGGAATCAGGGTACTGGAAGGCCACAGGAAAAGATAAAGAGATATTCAATAAGGTTAAAAAGCAGCAACAGCAGGGCGGCAAAGGTGCAGGAGGAGGGTGCCTGGTTGGGATGAAGAAGACTCTTGTGTTCTACAAAGGGAGAGCCCCTAAAGGAGAGAAGACCAACTGGGTCATGCATGAATACAGGCTTGATGGCAAAATCCCACTCTACAATAACCTCTCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAGAGTTTTCCACAAGAACATGGGGCTCAAAAGAACCCTTACCCCAACTCGGATGAACTCTTTTGGGAATATTGGGGATCACGATCTCTTGGATTGCTCTTCCCTCCCACCTCTTATGGATCCTACTCTTAATACTTCCAACATCATGACCAACAAACATTCTTCATGCTATGGAGACAATGACTTCAAGCCCGATTCCATTATCACAGCGCCACCCCCATCGGATTATCATGGAATCAACACTAACAGTTACCTCAACTACTTTTCATTGGGGGGAGGCGGCGGCGGTGTTCAAGGCCTCAAGCAGAGTTGCAACTTTCAGCTGCAGCCTAACAATAACTACAACAGTTACCAAGCCAGTAGTCTCAGTAACCCTTCCAACATGTTATATCCTCCACCTCTTCATCATAATCATCAGCATCATCACCAGTTTCAAAATCCTTCTAGTTTCCCAAATTTCCAGCCAAATCAGATGATGAGCGATTCTGATTATTTTCAACAAGGGATGATGAGGGGTACTCAAGGGCAAGGGTCGGTGTTCCAAACAAGTACTATTACTAGTAGTGACCGTGATGACGATGATCAGGCCATTCTAAAAGAAATAGCTGCAGCCAACAACAACAACAAGAGGAAGAATAATAATGAAACATCATCGTCTGGCTTAAGAGGAGGAGGCTTAGACAGGCACTGCAAGGTCGAGCAGTTTTCGTCCAACCAGTCTATGTTTAGCCTCTCCCAAGACACCGGATTGAGCACGGACATGAACACTACCGAGATATCATCATCATTTATTTCAAAGCAAGAATTGGGCAGCACCAACAACTCTTCCTATGATCAAGATCCATCTGTTGTCCCCCTTTCCGACATTGAAGGATTGTGGGACTTTTGA

Protein Analysis

482

Amino Acids

53.68

Weight (kDa)

6.36

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 27 - 165 3.1e-48 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011692)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04060 AT5G18270 AT5G18270
fragaria_vesca FvH4_1g27900
malus_domestica MD12G1001200.v1.1 MD14G1001200.v1.1
prunus_persica Prupe.7G001400_v2.0.a1
pyrus_communis pycom12g00110 pycom49g00070
rosa_chinensis RchiOBHm_Chr3g0497471
rosa_laevigata RLG00000022457
rosa_multiflora Rmu_sc0008086.1_g000018
rosa_roxburghii Rroxscaffold_6G00387990
rosa_rugosa Rorug03G0293100
rosa_samantha Rh3AG336800 Rh3BG375100 Rh3CG371100 Rh3DG371800
rosa_wichuraiana Rw3G029600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 402
AciI CCGC 4 cut(s) 381, 837, 840, 843
AclWI GGATC 5 cut(s) 12, 642, 671, 684, 1391
AcsI RAATTY 1 cut(s) 1012
AfaI GTAC 4 cut(s) 248, 317, 1075, 1108
AfiI CCNNNNNNNGG 2 cut(s) 529, 606
AflII CTTAAG 1 cut(s) 1219
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 8 cut(s) 190, 352, 745, 851, 992, 1055, 1353, 1427
AhlI ACTAGT 1 cut(s) 1115
AjnI CCWGG 2 cut(s) 82, 405
AluBI AGCT 6 cut(s) 67, 126, 156, 164, 880, 1163
AluI AGCT 6 cut(s) 67, 126, 156, 164, 880, 1163
Alw21I GWGCWC 2 cut(s) 69, 1313
Alw26I GTCTC 3 cut(s) 258, 726, 926
AlwI GGATC 5 cut(s) 12, 642, 671, 684, 1391
AlwNI CAGNNNCTG 1 cut(s) 1245
AoxI GGCC 3 cut(s) 324, 853, 1143
ApeKI GCWGC 8 cut(s) 153, 367, 533, 880, 883, 1163, 1166, 1368
ApoI RAATTY 1 cut(s) 1012
AspLEI GCGC 1 cut(s) 769
AsuHPI GGTGA 2 cut(s) 55, 974
AsuII TTCGAA 1 cut(s) 159
BamHI GGATCC 2 cut(s) 4, 676
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 3 cut(s) 69, 451, 585
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 2 cut(s) 428, 470
Bbv12I GWGCWC 2 cut(s) 69, 1313
BbvI GCAGC 8 cut(s) 165, 379, 520, 867, 895, 1150, 1178, 1380
BccI CCATC 5 cut(s) 7, 223, 491, 784, 1408
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BciT130I CCWGG 2 cut(s) 84, 407
BciVI GTATCC 1 cut(s) 285
BclI TGATCA 2 cut(s) 1138, 1390
BcoDI GTCTC 3 cut(s) 258, 726, 926
BcuI ACTAGT 1 cut(s) 1115
BfaI CTAG 3 cut(s) 123, 1002, 1116
BfmI CTRYAG 2 cut(s) 881, 1164
BfoI RGCGCY 1 cut(s) 770
BfrI CTTAAG 1 cut(s) 1219
BfuI GTATCC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 1108
Bme1390I CCNGG 2 cut(s) 84, 407
BmiI GGNNCC 3 cut(s) 6, 404, 678
BmrFI CCNGG 2 cut(s) 84, 407
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 1 cut(s) 985
BmuI ACTGGG 1 cut(s) 481
BpiI GAAGAC 2 cut(s) 428, 470
BplI GAGNNNNNCTC 2 cut(s) 1060, 1092
Bpu14I TTCGAA 1 cut(s) 159
BpuEI CTTGAG 3 cut(s) 53, 842, 1062
BsaBI GATNNNNATC 2 cut(s) 639, 1395
BsaJI CCNNGG 3 cut(s) 102, 203, 528
BsaWI WCCGGW 1 cut(s) 1301
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 606
Bse1I ACTGG 5 cut(s) 323, 476, 915, 985, 1273
Bse8I GATNNNNATC 2 cut(s) 639, 1395
BseBI CCWGG 2 cut(s) 84, 407
BseDI CCNNGG 3 cut(s) 102, 203, 528
BseGI GGATG 7 cut(s) 97, 112, 291, 420, 547, 615, 1068
BseJI GATNNNNATC 2 cut(s) 639, 1395
BseLI CCNNNNNNNGG 2 cut(s) 529, 606
BseMII CTCAG 1 cut(s) 937
BseNI ACTGG 5 cut(s) 323, 476, 915, 985, 1273
BseRI GAGGAG 3 cut(s) 411, 1239, 1242
BseXI GCAGC 8 cut(s) 165, 379, 520, 867, 895, 1150, 1178, 1380
BsgI GTGCAG 2 cut(s) 411, 577
BshFI GGCC 3 cut(s) 326, 855, 1145
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 2 cut(s) 69, 1313
BsiSI CCGG 1 cut(s) 1302
BslFI GGGAC 1 cut(s) 1394
BslI CCNNNNNNNGG 2 cut(s) 529, 606
BsmAI GTCTC 3 cut(s) 258, 726, 926
BsmFI GGGAC 1 cut(s) 1394
BsnI GGCC 3 cut(s) 326, 855, 1145
Bsp119I TTCGAA 1 cut(s) 159
Bsp1286I GDGCHC 4 cut(s) 69, 451, 585, 1313
Bsp143I GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
BspACI CCGC 4 cut(s) 381, 837, 840, 843
BspANI GGCC 3 cut(s) 326, 855, 1145
BspCNI CTCAG 1 cut(s) 936
BspHI TCATGA 1 cut(s) 702
BspLI GGNNCC 3 cut(s) 6, 404, 678
BspMAI CTGCAG 2 cut(s) 885, 1168
BspPI GGATC 5 cut(s) 12, 642, 671, 684, 1391
BspQI GCTCTTC 1 cut(s) 661
BspT104I TTCGAA 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 402
BspTI CTTAAG 1 cut(s) 1219
BsrI ACTGG 5 cut(s) 323, 476, 915, 985, 1273
BssECI CCNNGG 3 cut(s) 102, 203, 528
BssMI GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
BssT1I CCWWGG 2 cut(s) 203, 528
Bst2UI CCWGG 2 cut(s) 84, 407
Bst4CI ACNGT 3 cut(s) 806, 905, 1127
Bst6I CTCTTC 3 cut(s) 661, 963, 1387
BstAFI CTTAAG 1 cut(s) 1219
BstBI TTCGAA 1 cut(s) 159
BstDEI CTNAG 2 cut(s) 923, 1234
BstDSI CCRYGG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 7 cut(s) 97, 112, 291, 420, 547, 615, 1068
BstH2I RGCGCY 1 cut(s) 770
BstHHI GCGC 1 cut(s) 769
BstKTI GATC 7 cut(s) 7, 637, 643, 679, 1141, 1393, 1399
BstMAI GTCTC 3 cut(s) 258, 726, 926
BstMBI GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 2 cut(s) 84, 407
BstNSI RCATGY 1 cut(s) 943
BstSCI CCNGG 2 cut(s) 82, 405
BstSFI CTRYAG 2 cut(s) 881, 1164
BstV1I GCAGC 8 cut(s) 165, 379, 520, 867, 895, 1150, 1178, 1380
BstV2I GAAGAC 2 cut(s) 428, 470
BstX2I RGATCY 3 cut(s) 4, 676, 1396
BstYI RGATCY 3 cut(s) 4, 676, 1396
BsuI GTATCC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 326, 855, 1145
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 7 cut(s) 97, 112, 291, 420, 547, 615, 1068
BtsI GCAGTG 1 cut(s) 1243
BtsIMutI CAGTG 1 cut(s) 1243
CaiI CAGNNNCTG 1 cut(s) 1245
CciI TCATGA 1 cut(s) 702
CfoI GCGC 1 cut(s) 769
Csp6I GTAC 4 cut(s) 247, 316, 1074, 1107
CviAII CATG 9 cut(s) 37, 478, 482, 577, 703, 723, 788, 940, 1318
CviQI GTAC 4 cut(s) 247, 316, 1074, 1107
DdeI CTNAG 2 cut(s) 923, 1234
DpnI GATC 7 cut(s) 6, 636, 642, 678, 1140, 1392, 1398
DpnII GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
Eam1104I CTCTTC 3 cut(s) 661, 963, 1387
EarI CTCTTC 3 cut(s) 661, 963, 1387
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 203, 528
Eco147I AGGCCT 1 cut(s) 855
Eco24I GRGCYC 3 cut(s) 69, 451, 585
Eco32I GATATC 1 cut(s) 1335
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 82, 405
EcoRV GATATC 1 cut(s) 1335
EcoT14I CCWWGG 2 cut(s) 203, 528
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 3 cut(s) 69, 451, 585
ErhI CCWWGG 2 cut(s) 203, 528
FaeI CATG 9 cut(s) 40, 481, 485, 580, 706, 726, 791, 943, 1321
FaqI GGGAC 1 cut(s) 1394
FatI CATG 9 cut(s) 36, 477, 481, 576, 702, 722, 787, 939, 1317
FbaI TGATCA 2 cut(s) 1138, 1390
FokI GGATG 7 cut(s) 84, 119, 298, 427, 554, 622, 1075
FriOI GRGCYC 3 cut(s) 69, 451, 585
FspBI CTAG 3 cut(s) 123, 1002, 1116
GlaI GCGC 1 cut(s) 768
HaeII RGCGCY 1 cut(s) 770
HaeIII GGCC 3 cut(s) 326, 855, 1145
HapII CCGG 1 cut(s) 1302
HhaI GCGC 1 cut(s) 769
Hin1II CATG 9 cut(s) 40, 481, 485, 580, 706, 726, 791, 943, 1321
Hin6I GCGC 1 cut(s) 767
HinP1I GCGC 1 cut(s) 767
HinfI GANTC 6 cut(s) 295, 308, 424, 752, 792, 1040
HpaII CCGG 1 cut(s) 1302
HphI GGTGA 2 cut(s) 55, 974
Hpy188I TCNGA 7 cut(s) 61, 279, 609, 781, 1029, 1045, 1420
Hpy188III TCNNGA 3 cut(s) 638, 703, 1394
Hpy99I CGWCG 3 cut(s) 13, 283, 307
HpyAV CCTTC 6 cut(s) 133, 232, 316, 942, 1008, 1421
HpyCH4III ACNGT 3 cut(s) 806, 905, 1127
HpyCH4V TGCA 9 cut(s) 170, 392, 481, 536, 558, 870, 883, 1166, 1248
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 2 cut(s) 923, 1234
Hsp92II CATG 9 cut(s) 40, 481, 485, 580, 706, 726, 791, 943, 1321
HspAI GCGC 1 cut(s) 767
Ksp22I TGATCA 2 cut(s) 1138, 1390
Kzo9I GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
LguI GCTCTTC 1 cut(s) 661
Lsp1109I GCAGC 8 cut(s) 165, 379, 520, 867, 895, 1150, 1178, 1380
LweI GCATC 1 cut(s) 985
MaeI CTAG 3 cut(s) 123, 1002, 1116
MaeIII GTNAC 4 cut(s) 806, 905, 926, 1121
MalI GATC 7 cut(s) 6, 636, 642, 678, 1140, 1392, 1398
MboI GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
MboII GAAGA 9 cut(s) 122, 430, 433, 475, 648, 711, 950, 1201, 1374
MflI RGATCY 3 cut(s) 4, 676, 1396
MhlI GDGCHC 4 cut(s) 69, 451, 585, 1313
MluCI AATT 2 cut(s) 1012, 1361
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 5 cut(s) 302, 720, 960, 1293, 1443
Mph1103I ATGCAT 1 cut(s) 483
MseI TTAA 3 cut(s) 360, 687, 1220
MslI CAYNNNNRTG 2 cut(s) 41, 1316
MspA1I CMGCKG 1 cut(s) 880
MspCI CTTAAG 1 cut(s) 1219
MspI CCGG 1 cut(s) 1302
MspR9I CCNGG 2 cut(s) 84, 407
MvaI CCWGG 2 cut(s) 84, 407
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
NlaIII CATG 9 cut(s) 40, 481, 485, 580, 706, 726, 791, 943, 1321
NlaIV GGNNCC 3 cut(s) 6, 404, 678
NmuCI GTSAC 1 cut(s) 1121
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 943
NspV TTCGAA 1 cut(s) 159
PagI TCATGA 1 cut(s) 702
PceI AGGCCT 1 cut(s) 855
PciI ACATGT 1 cut(s) 939
PciSI GCTCTTC 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 299
PfeI GAWTC 5 cut(s) 295, 308, 752, 792, 1040
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PscI ACATGT 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 82, 405
PspGI CCWGG 2 cut(s) 82, 405
PspN4I GGNNCC 3 cut(s) 6, 404, 678
PstI CTGCAG 2 cut(s) 885, 1168
PstNI CAGNNNCTG 1 cut(s) 1245
PsuI RGATCY 3 cut(s) 4, 676, 1396
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 4 cut(s) 248, 317, 1075, 1108
RsaNI GTAC 4 cut(s) 247, 316, 1074, 1107
RseI CAYNNNNRTG 2 cut(s) 41, 1316
SacI GAGCTC 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 661
SaqAI TTAA 3 cut(s) 360, 687, 1220
Sau3AI GATC 7 cut(s) 4, 634, 640, 676, 1138, 1390, 1396
ScaI AGTACT 1 cut(s) 1108
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 84, 407
SduI GDGCHC 4 cut(s) 69, 451, 585, 1313
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 2 cut(s) 881, 1164
SfuI TTCGAA 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 41, 1316
SmlI CTYRAG 4 cut(s) 68, 857, 1077, 1219
SmoI CTYRAG 4 cut(s) 68, 857, 1077, 1219
SpeI ACTAGT 1 cut(s) 1115
Sse9I AATT 2 cut(s) 1012, 1361
SseBI AGGCCT 1 cut(s) 855
SsiI CCGC 4 cut(s) 381, 837, 840, 843
SspI AATATT 1 cut(s) 628
SspMI CTAG 3 cut(s) 123, 1002, 1116
SstI GAGCTC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 855
StyD4I CCNGG 2 cut(s) 82, 405
StyI CCWWGG 2 cut(s) 203, 528
TaaI ACNGT 3 cut(s) 806, 905, 1127
TaqI TCGA 4 cut(s) 11, 159, 298, 1254
TasI AATT 2 cut(s) 1012, 1361
TatI WGTACW 1 cut(s) 1106
TauI GCSGC 3 cut(s) 384, 840, 843
TfiI GAWTC 5 cut(s) 295, 308, 752, 792, 1040
Tru1I TTAA 3 cut(s) 360, 687, 1220
Tru9I TTAA 3 cut(s) 360, 687, 1220
TscAI CASTG 1 cut(s) 1250
TseFI GTSAC 1 cut(s) 1121
TseI GCWGC 8 cut(s) 153, 367, 533, 880, 883, 1163, 1166, 1368
Tsp45I GTSAC 1 cut(s) 1121
TspGWI ACGGA 3 cut(s) 119, 320, 1328
TspRI CASTG 1 cut(s) 1250
Vha464I CTTAAG 1 cut(s) 1219
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 1 cut(s) 1012
XceI RCATGY 1 cut(s) 943
XspI CTAG 3 cut(s) 123, 1002, 1116
ZrmI AGTACT 1 cut(s) 1108
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.