Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000810

Orthogroup ID

OG0009480

Physical Location & Seq

Genomic Coordinates Forward (+)

15423 .. 24930

Gene Structure 9508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTACCTTCTTCCAAAGGCTCGCCAAGGCGGCGCCGATCGCCTTCAACAGCTCGTTTCGAGGTCAATCGAAGTCCAGCTTTCGCATTCCCTTCGGGGCAGTCGCAGCCGTCTCCGGCGGAATCTCCTATCTCTGCTACTATTCCTCGCCGGATTTGGTCTATCTAGATGAAATCAAAGAACAGACTGGCCCAAAAGTTGCACTTAATCCAGACAAATGGGTTGAATTTAAGTTGCAAGATACTGCAAGGGTTAGCCATAATACACAATTATTCAGGTTTACATTTGATCCGAATGCCAAGTCGGGTATATATGTTGCTTCATGTCTCCTTACGAGGGCTCCATTAGAACAAGATGCTGAAGGGAAACCAAAATATGTCATACGCCCGTATACTCCTATTTCAGATCCAGATGCCAAGGGATACTTTGACTTGTTAATTAAGGTGTATCCACAAGGAAAAATGAGCCAGCATTTCGCAAGTTTAAAACCAGGCGACATAGTTGAAATGAAGGGGCCCATTGAAAAACTCAGATATACTCCCAACATGAAGAAACATATAGGCATGATTGCCGGTGGTACAGGTATTACTCCAATGCTTCAGGTTATTGAGGCCATACTGAAAAATCCTGACGACACAACTCAGGTGTCACTTCTTTATGCGAATGTCTCCCCTGATGACATACTGCTTAAACAGAAACTCGACATACTTGCAGCTAGCCACCCAAATTTAAAGGTATTTTACACTGTAGATAATCCAACAAAGAGTTGGAATGGGGGAAAAGGTTACATATCAAAGGATATGGCAGTTAAAGGCTTACCTGCTCCTGGTGAAGATACTCTCATCCTGGTATGTGGTCCTCCTGGGATGATGAAACATATATCTGGTGACAAGGCTCAAGACCGATCGCAAGGAGAGCTCACTGGCATACTAAAAGAACTCGGGTACACTGAAGAAATGGTATTTTTGATTCAGCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005758 GO:0005794 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009505 GO:0009628 GO:0009651 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0030312 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0055114 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

328

Amino Acids

35.96

Weight (kDa)

8.7

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	77 - 179	4.6e-24	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	189 - 294	1.3e-31	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20080
fragaria_vesca	FvH4_1g03580
malus_domestica	MD00G1107200.v1.1 MD02G1035100.v1.1
prunus_persica	Prupe.7G239800_v2.0.a1
pyrus_communis	pycom02g02870 pycom02g02890 pycom02g02910 pycom15g15760 pycom810g00010 pycom810g00030
rosa_chinensis	RchiOBHm_Chr2g0089111
rosa_laevigata	RLG00000015992
rosa_multiflora	Rmu_sc0003668.1_g000001 Rmu_sc0005510.1_g000001
rosa_roxburghii	Rroxscaffold_2G00152240
rosa_rugosa	Rorug01G0487500
rosa_samantha	Rh2AG043000 Rh2BG041500 Rh2CG043100 Rh2DG042100
rosa_wichuraiana	Rw2G003460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	829
AccB1I	GGYRCC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	392
AciI	CCGC	2 cut(s)	32, 120
AclWI	GGATC	2 cut(s)	284, 401
AcsI	RAATTY	2 cut(s)	227, 727
AcuI	CTGAAG	3 cut(s)	381, 584, 972
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	2 cut(s)	580, 947
AfiI	CCNNNNNNNGG	2 cut(s)	337, 827
AgsI	TTSAA	4 cut(s)	49, 227, 506, 524
AjnI	CCWGG	4 cut(s)	490, 826, 846, 862
AluBI	AGCT	4 cut(s)	54, 81, 716, 919
AluI	AGCT	4 cut(s)	54, 81, 716, 919
Alw21I	GWGCWC	1 cut(s)	921
Alw26I	GTCTC	3 cut(s)	118, 332, 673
AlwI	GGATC	2 cut(s)	284, 401
Ama87I	CYCGRG	1 cut(s)	941
AoxI	GGCC	3 cut(s)	190, 515, 612
ApaI	GGGCCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	107, 713
ApoI	RAATTY	2 cut(s)	227, 727
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	4 cut(s)	191, 515, 516, 857
AsuHPI	GGTGA	2 cut(s)	842, 899
AsuNHI	GCTAGC	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	3 cut(s)	343, 519, 921
Bbv12I	GWGCWC	1 cut(s)	921
BbvI	GCAGC	2 cut(s)	119, 725
BceAI	ACGGC	1 cut(s)	95
BcgI	CGANNNNNNTGC	4 cut(s)	76, 110, 692, 726
BciT130I	CCWGG	4 cut(s)	492, 828, 848, 864
BciVI	GTATCC	2 cut(s)	416, 459
BcoDI	GTCTC	3 cut(s)	118, 332, 673
BfaI	CTAG	2 cut(s)	167, 717
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	829
BfuI	GTATCC	2 cut(s)	416, 459
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	33, 108, 714
BlsI	GCNGC	3 cut(s)	34, 109, 715
Bme1390I	CCNGG	4 cut(s)	492, 828, 848, 864
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	4 cut(s)	191, 515, 516, 857
BmiI	GGNNCC	4 cut(s)	36, 342, 516, 517
BmrFI	CCNGG	4 cut(s)	492, 828, 848, 864
BmsI	GCATC	2 cut(s)	346, 403
BmtI	GCTAGC	1 cut(s)	720
BpuEI	CTTGAG	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	3 cut(s)	27, 417, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 827
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	193, 928
BseBI	CCWGG	4 cut(s)	492, 828, 848, 864
BseDI	CCNNGG	3 cut(s)	27, 417, 863
BseGI	GGATG	2 cut(s)	843, 873
BseLI	CCNNNNNNNGG	2 cut(s)	337, 827
BseMII	CTCAG	2 cut(s)	544, 656
BseNI	ACTGG	2 cut(s)	193, 928
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	119, 725
Bsh1285I	CGRYCG	2 cut(s)	42, 908
BshFI	GGCC	3 cut(s)	192, 517, 614
BshNI	GGYRCC	1 cut(s)	34
BsiEI	CGRYCG	2 cut(s)	42, 908
BsiHKAI	GWGCWC	1 cut(s)	921
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	3 cut(s)	117, 152, 573
BslI	CCNNNNNNNGG	2 cut(s)	337, 827
BsmAI	GTCTC	3 cut(s)	118, 332, 673
BsmBI	CGTCTC	1 cut(s)	118
BsmI	GAATGC	2 cut(s)	87, 301
BsnI	GGCC	3 cut(s)	192, 517, 614
BsoBI	CYCGRG	1 cut(s)	941
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	3 cut(s)	343, 519, 921
Bsp143I	GATC	4 cut(s)	39, 289, 406, 905
BspACI	CCGC	2 cut(s)	32, 120
BspANI	GGCC	3 cut(s)	192, 517, 614
BspCNI	CTCAG	2 cut(s)	543, 655
BspLI	GGNNCC	4 cut(s)	36, 342, 516, 517
BspMI	ACCTGC	1 cut(s)	829
BspOI	GCTAGC	1 cut(s)	720
BspPI	GGATC	2 cut(s)	284, 401
BspT107I	GGYRCC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	2 cut(s)	193, 928
BssAI	RCCGGY	1 cut(s)	572
BssECI	CCNNGG	3 cut(s)	27, 417, 863
BssMI	GATC	4 cut(s)	39, 289, 406, 905
BssNAI	GTATAC	1 cut(s)	393
BssNI	GRCGYC	1 cut(s)	35
BssT1I	CCWWGG	2 cut(s)	27, 417
Bst1107I	GTATAC	1 cut(s)	393
Bst2UI	CCWGG	4 cut(s)	492, 828, 848, 864
Bst4CI	ACNGT	1 cut(s)	748
BstACI	GRCGYC	1 cut(s)	35
BstC8I	GCNNGC	3 cut(s)	24, 470, 718
BstDEI	CTNAG	2 cut(s)	530, 642
BstF5I	GGATG	2 cut(s)	843, 873
BstH2I	RGCGCY	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	42, 292, 409, 908
BstMAI	GTCTC	3 cut(s)	118, 332, 673
BstMBI	GATC	4 cut(s)	39, 289, 406, 905
BstMCI	CGRYCG	2 cut(s)	42, 908
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 41, 107, 916
BstNI	CCWGG	4 cut(s)	492, 828, 848, 864
BstSCI	CCNGG	4 cut(s)	490, 826, 846, 862
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	119, 725
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	393
BsuI	GTATCC	2 cut(s)	416, 459
BsuRI	GGCC	3 cut(s)	192, 517, 614
BtsCI	GGATG	2 cut(s)	843, 873
BtsIMutI	CAGTG	3 cut(s)	744, 921, 948
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	3 cut(s)	24, 470, 718
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	4 cut(s)	191, 515, 516, 857
Csp6I	GTAC	2 cut(s)	579, 946
CviAII	CATG	3 cut(s)	324, 547, 565
CviQI	GTAC	2 cut(s)	579, 946
DdeI	CTNAG	2 cut(s)	530, 642
DinI	GGCGCC	1 cut(s)	36
DpnI	GATC	4 cut(s)	41, 291, 408, 907
DpnII	GATC	4 cut(s)	39, 289, 406, 905
DraI	TTTAAA	2 cut(s)	486, 732
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	919
Eco130I	CCWWGG	2 cut(s)	27, 417
Eco24I	GRGCYC	3 cut(s)	343, 519, 921
Eco47I	GGWCC	1 cut(s)	857
Eco53kI	GAGCTC	1 cut(s)	919
Eco57I	CTGAAG	3 cut(s)	381, 584, 972
Eco88I	CYCGRG	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	919
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRII	CCWGG	4 cut(s)	490, 826, 846, 862
EcoT14I	CCWWGG	2 cut(s)	27, 417
EcoT38I	GRGCYC	3 cut(s)	343, 519, 921
EgeI	GGCGCC	1 cut(s)	36
EheI	GGCGCC	1 cut(s)	36
ErhI	CCWWGG	2 cut(s)	27, 417
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	3 cut(s)	327, 550, 568
FalI	AAGNNNNNCTT	6 cut(s)	65, 97, 189, 221, 410, 442
FatI	CATG	3 cut(s)	323, 546, 564
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	3 cut(s)	33, 108, 714
FokI	GGATG	2 cut(s)	830, 880
FriOI	GRGCYC	3 cut(s)	343, 519, 921
Fsp4HI	GCNGC	3 cut(s)	33, 108, 714
FspBI	CTAG	2 cut(s)	167, 717
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	33, 108, 714
HaeII	RGCGCY	1 cut(s)	38
HaeIII	GGCC	3 cut(s)	192, 517, 614
HapII	CCGG	3 cut(s)	117, 152, 573
HhaI	GCGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	327, 550, 568
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	2 cut(s)	123, 970
HpaII	CCGG	3 cut(s)	117, 152, 573
HphI	GGTGA	2 cut(s)	842, 899
Hpy166II	GTNNAC	3 cut(s)	282, 393, 948
Hpy188I	TCNGA	3 cut(s)	294, 406, 533
Hpy188III	TCNNGA	5 cut(s)	167, 212, 410, 629, 899
Hpy8I	GTNNAC	3 cut(s)	282, 393, 948
HpyAV	CCTTC	5 cut(s)	19, 55, 103, 356, 505
HpyCH4III	ACNGT	1 cut(s)	748
HpyCH4V	TGCA	4 cut(s)	203, 238, 248, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 41, 107, 916
HpyF3I	CTNAG	2 cut(s)	530, 642
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	327, 550, 568
HspAI	GCGC	1 cut(s)	35
KasI	GGCGCC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	39, 289, 406, 905
LmnI	GCTCC	2 cut(s)	346, 829
Lsp1109I	GCAGC	2 cut(s)	119, 725
LweI	GCATC	2 cut(s)	346, 403
MaeI	CTAG	2 cut(s)	167, 717
MaeIII	GTNAC	3 cut(s)	648, 785, 887
MalI	GATC	4 cut(s)	41, 291, 408, 907
MboI	GATC	4 cut(s)	39, 289, 406, 905
MboII	GAAGA	4 cut(s)	4, 562, 845, 965
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	3 cut(s)	343, 519, 921
MluCI	AATT	4 cut(s)	227, 269, 438, 727
Mly113I	GGCGCC	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	749, 782
MnlI	CCTC	5 cut(s)	56, 157, 330, 604, 870
MseI	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
MspI	CCGG	3 cut(s)	117, 152, 573
MspR9I	CCNGG	4 cut(s)	492, 828, 848, 864
Mva1269I	GAATGC	2 cut(s)	87, 301
MvaI	CCWGG	4 cut(s)	492, 828, 848, 864
MwoI	GCNNNNNNNGC	4 cut(s)	32, 41, 107, 916
NarI	GGCGCC	1 cut(s)	35
NdeII	GATC	4 cut(s)	39, 289, 406, 905
NheI	GCTAGC	1 cut(s)	716
NlaIII	CATG	3 cut(s)	327, 550, 568
NlaIV	GGNNCC	4 cut(s)	36, 342, 516, 517
NmuCI	GTSAC	2 cut(s)	648, 887
PacI	TTAATTAA	1 cut(s)	441
PctI	GAATGC	2 cut(s)	87, 301
PfeI	GAWTC	2 cut(s)	123, 970
PkrI	GCNGC	3 cut(s)	34, 109, 715
Ple19I	CGATCG	2 cut(s)	42, 908
PluTI	GGCGCC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	921
Psp6I	CCWGG	4 cut(s)	490, 826, 846, 862
PspGI	CCWGG	4 cut(s)	490, 826, 846, 862
PspN4I	GGNNCC	4 cut(s)	36, 342, 516, 517
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	4 cut(s)	191, 515, 516, 857
PsuI	RGATCY	1 cut(s)	406
PvuI	CGATCG	2 cut(s)	42, 908
RsaI	GTAC	2 cut(s)	580, 947
RsaNI	GTAC	2 cut(s)	579, 946
SacI	GAGCTC	1 cut(s)	921
SaqAI	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
SatI	GCNGC	3 cut(s)	33, 108, 714
Sau3AI	GATC	4 cut(s)	39, 289, 406, 905
Sau96I	GGNCC	4 cut(s)	191, 515, 516, 857
ScrFI	CCNGG	4 cut(s)	492, 828, 848, 864
SduI	GDGCHC	3 cut(s)	343, 519, 921
SfaNI	GCATC	2 cut(s)	346, 403
SfcI	CTRYAG	1 cut(s)	747
SfoI	GGCGCC	1 cut(s)	36
SinI	GGWCC	1 cut(s)	857
SmlI	CTYRAG	1 cut(s)	897
SmoI	CTYRAG	1 cut(s)	897
Sse9I	AATT	4 cut(s)	227, 269, 438, 727
SsiI	CCGC	2 cut(s)	32, 120
SspDI	GGCGCC	1 cut(s)	34
SspMI	CTAG	2 cut(s)	167, 717
SstI	GAGCTC	1 cut(s)	921
StyD4I	CCNGG	4 cut(s)	490, 826, 846, 862
StyI	CCWWGG	2 cut(s)	27, 417
TaaI	ACNGT	1 cut(s)	748
TaqI	TCGA	3 cut(s)	61, 71, 702
TaqII	GACCGA	1 cut(s)	918
TasI	AATT	4 cut(s)	227, 269, 438, 727
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	123, 970
Tru1I	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
Tru9I	TTAA	8 cut(s)	207, 231, 437, 441, 485, 690, 731, 810
TscAI	CASTG	3 cut(s)	751, 928, 955
TseFI	GTSAC	2 cut(s)	648, 887
TseI	GCWGC	2 cut(s)	107, 713
Tsp45I	GTSAC	2 cut(s)	648, 887
TspDTI	ATGAA	5 cut(s)	186, 312, 524, 563, 887
TspRI	CASTG	3 cut(s)	751, 928, 955
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	2 cut(s)	227, 727
XbaI	TCTAGA	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	765
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	2 cut(s)	167, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.