RchiOBHm_Chr7g0219421

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
37890811 .. 37897458
6648 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1998 bp
ATGGGTAAGAGAGGAAAGAGTAGTAGTCAGAGAAAAGGCAATGAAAACCCTACTAAGACAAAGTTCCATGCCGTTGAAGACGACATGGATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTGATCAAGACGTTACAGATTCCGATGAAGATAACGAGCAAACAGTTTTCGATCTTCAGAATGTTAATGGCGACGAGGAAGAGGAAGACGACGATGACATCCCCGATACTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGACGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTCTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCTCCTTGTAGAGATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCGGTGGTGAAATCGGTTAAAGAGAATGCTGCAAAACCATCGGATACTTTTGCTAAAGGATACAGGTCCCAACTTGTCTCACTTGAACCAAAAGAAGCAGCTGTGTCACATAACACAGTCCAGATGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAAGTGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGCGCTAACCAGGGTCGTGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGTGATGATGACTTACCTCAGAGAGATGATATCGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAGGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTGCCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGATGGAGAAGAACAGAGGACTTACTCGCGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAGCATGAGAAGAAAATGAAGAATCGGAAAGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATACGGTGGGGAGACATCTGGAATCAATCCGAGAATCAGTCGGAGCACCAGATTTAAGAACTAA

Protein Analysis

665

Amino Acids

75.15

Weight (kDa)

5.09

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 242 - 322 1.4e-17 Sas10/Utp3/C1D family
Sas10 PF09368 591 - 663 2.7e-26 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1352, 1940
AccII CGCG 1 cut(s) 1824
AciI CCGC 3 cut(s) 303, 458, 1037
AclI AACGTT 1 cut(s) 875
AclWI GGATC 1 cut(s) 764
AcuI CTGAAG 6 cut(s) 179, 459, 918, 1199, 1361, 1422
AfaI GTAC 4 cut(s) 628, 927, 1560, 1908
AfiI CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
AjnI CCWGG 2 cut(s) 376, 1413
Alw21I GWGCWC 2 cut(s) 1554, 1982
Alw26I GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
AlwI GGATC 1 cut(s) 764
AlwNI CAGNNNCTG 1 cut(s) 1571
Ama87I CYCGRG 2 cut(s) 594, 1001
AoxI GGCC 1 cut(s) 901
ApeKI GCWGC 9 cut(s) 257, 274, 841, 1064, 1133, 1262, 1463, 1700, 1712
AspLEI GCGC 3 cut(s) 825, 1409, 1826
AspS9I GGNCC 4 cut(s) 1101, 1581, 1737, 1931
AsuHPI GGTGA 5 cut(s) 809, 847, 1054, 1180, 1508
AvaI CYCGRG 2 cut(s) 594, 1001
AvaII GGWCC 4 cut(s) 1101, 1581, 1737, 1931
BanII GRGCYC 1 cut(s) 1554
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 3 cut(s) 84, 231, 507
Bbv12I GWGCWC 2 cut(s) 1554, 1982
BbvI GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 6 cut(s) 416, 450, 1056, 1090, 1574, 1608
BciT130I CCWGG 2 cut(s) 378, 1415
BciVI GTATCC 2 cut(s) 1072, 1088
BclI TGATCA 3 cut(s) 142, 916, 1839
BcoDI GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
BfaI CTAG 3 cut(s) 605, 1440, 1734
BfoI RGCGCY 1 cut(s) 1410
BfuI GTATCC 2 cut(s) 1072, 1088
BisI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
BlsI GCNGC 9 cut(s) 259, 276, 843, 1066, 1135, 1264, 1465, 1702, 1714
BmcAI AGTACT 1 cut(s) 1560
Bme1390I CCNGG 2 cut(s) 378, 1415
Bme18I GGWCC 4 cut(s) 1101, 1581, 1737, 1931
BmeT110I CYCGRG 2 cut(s) 594, 1001
BmgT120I GGNCC 4 cut(s) 1101, 1581, 1737, 1931
BmiI GGNNCC 1 cut(s) 1103
BmrFI CCNGG 2 cut(s) 378, 1415
BmsI GCATC 3 cut(s) 91, 730, 1582
BoxI GACNNNNGTC 1 cut(s) 1477
BpiI GAAGAC 3 cut(s) 84, 231, 507
BpmI CTGGAG 2 cut(s) 1617, 1674
BpuEI CTTGAG 3 cut(s) 533, 875, 1289
BsaBI GATNNNNATC 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 1414, 1584
BsaXI ACNNNNNCTCC 6 cut(s) 364, 394, 918, 948, 1536, 1566
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
Bse1I ACTGG 3 cut(s) 253, 981, 1566
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 2 cut(s) 378, 1415
BseDI CCNNGG 2 cut(s) 1414, 1584
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 1526, 1758
BseNI ACTGG 3 cut(s) 253, 981, 1566
BseRI GAGGAG 2 cut(s) 653, 1732
BseXI GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 1824
BshFI GGCC 1 cut(s) 903
BsiHKAI GWGCWC 2 cut(s) 1554, 1982
BsiHKCI CYCGRG 2 cut(s) 594, 1001
BslFI GGGAC 1 cut(s) 1087
BslI CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
BsmAI GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
BsmFI GGGAC 1 cut(s) 1087
BsmI GAATGC 3 cut(s) 664, 825, 1066
BsnI GGCC 1 cut(s) 903
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 2 cut(s) 594, 1001
Bsp1286I GDGCHC 2 cut(s) 1554, 1982
Bsp143I GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
BspACI CCGC 3 cut(s) 303, 458, 1037
BspANI GGCC 1 cut(s) 903
BspCNI CTCAG 2 cut(s) 1525, 1757
BspFNI CGCG 1 cut(s) 1824
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 1103
BspPI GGATC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 3 cut(s) 253, 981, 1566
BssECI CCNNGG 2 cut(s) 1414, 1584
BssMI GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
BssSI CACGAG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 378, 1415
Bst4CI ACNGT 4 cut(s) 184, 1153, 1768, 1940
Bst6I CTCTTC 3 cut(s) 213, 435, 744
BstC8I GCNNGC 2 cut(s) 726, 855
BstDEI CTNAG 3 cut(s) 54, 1512, 1744
BstFNI CGCG 1 cut(s) 1824
BstH2I RGCGCY 1 cut(s) 1410
BstHHI GCGC 3 cut(s) 825, 1409, 1826
BstKTI GATC 7 cut(s) 145, 193, 772, 919, 948, 1000, 1842
BstMAI GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
BstMBI GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
BstMWI GCNNNNNNNGC 6 cut(s) 455, 730, 850, 1406, 1709, 1718
BstNI CCWGG 2 cut(s) 378, 1415
BstPAI GACNNNNGTC 1 cut(s) 1477
BstSCI CCNGG 2 cut(s) 376, 1413
BstUI CGCG 1 cut(s) 1824
BstV1I GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
BstV2I GAAGAC 3 cut(s) 84, 231, 507
BsuI GTATCC 2 cut(s) 1072, 1088
BsuRI GGCC 1 cut(s) 903
Cac8I GCNNGC 2 cut(s) 726, 855
CaiI CAGNNNCTG 1 cut(s) 1571
CciI TCATGA 1 cut(s) 804
CfoI GCGC 3 cut(s) 825, 1409, 1826
Cfr13I GGNCC 4 cut(s) 1101, 1581, 1737, 1931
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 4 cut(s) 627, 926, 1559, 1907
CviAII CATG 9 cut(s) 68, 85, 386, 572, 622, 805, 1240, 1547, 1874
CviQI GTAC 4 cut(s) 627, 926, 1559, 1907
DdeI CTNAG 3 cut(s) 54, 1512, 1744
DpnI GATC 7 cut(s) 144, 192, 771, 918, 947, 999, 1841
DpnII GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 3 cut(s) 213, 435, 744
EarI CTCTTC 3 cut(s) 213, 435, 744
EciI GGCGGA 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 1552
Eco24I GRGCYC 1 cut(s) 1554
Eco31I GGTCTC 1 cut(s) 367
Eco32I GATATC 1 cut(s) 1525
Eco47I GGWCC 4 cut(s) 1101, 1581, 1737, 1931
Eco53kI GAGCTC 1 cut(s) 1552
Eco57I CTGAAG 6 cut(s) 179, 459, 918, 1199, 1361, 1422
Eco88I CYCGRG 2 cut(s) 594, 1001
EcoICRI GAGCTC 1 cut(s) 1552
EcoO109I RGGNCCY 2 cut(s) 1101, 1737
EcoRII CCWGG 2 cut(s) 376, 1413
EcoRV GATATC 1 cut(s) 1525
EcoT38I GRGCYC 1 cut(s) 1554
FaeI CATG 9 cut(s) 71, 88, 389, 575, 625, 808, 1243, 1550, 1877
FaqI GGGAC 1 cut(s) 1087
FatI CATG 9 cut(s) 67, 84, 385, 571, 621, 804, 1239, 1546, 1873
FbaI TGATCA 3 cut(s) 142, 916, 1839
Fnu4HI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
FriOI GRGCYC 1 cut(s) 1554
Fsp4HI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
FspBI CTAG 3 cut(s) 605, 1440, 1734
GlaI GCGC 3 cut(s) 824, 1408, 1825
GluI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
GsuI CTGGAG 2 cut(s) 1617, 1674
HaeII RGCGCY 1 cut(s) 1410
HaeIII GGCC 1 cut(s) 903
HhaI GCGC 3 cut(s) 825, 1409, 1826
Hin1II CATG 9 cut(s) 71, 88, 389, 575, 625, 808, 1243, 1550, 1877
Hin6I GCGC 3 cut(s) 823, 1407, 1824
HinP1I GCGC 3 cut(s) 823, 1407, 1824
HindIII AAGCTT 1 cut(s) 1358
HphI GGTGA 5 cut(s) 809, 847, 1054, 1180, 1508
Hpy166II GTNNAC 2 cut(s) 1208, 1232
Hpy8I GTNNAC 2 cut(s) 1208, 1232
Hpy99I CGWCG 3 cut(s) 215, 233, 428
HpyAV CCTTC 8 cut(s) 363, 786, 806, 893, 893, 1174, 1282, 1397
HpyCH4III ACNGT 4 cut(s) 184, 1153, 1768, 1940
HpyCH4IV ACGT 5 cut(s) 150, 875, 1204, 1210, 1780
HpyCH4V TGCA 6 cut(s) 260, 704, 743, 1067, 1424, 1703
HpyF10VI GCNNNNNNNGC 6 cut(s) 455, 730, 850, 1406, 1709, 1718
HpyF3I CTNAG 3 cut(s) 54, 1512, 1744
HpySE526I ACGT 5 cut(s) 150, 875, 1204, 1210, 1780
Hsp92II CATG 9 cut(s) 71, 88, 389, 575, 625, 808, 1243, 1550, 1877
HspAI GCGC 3 cut(s) 823, 1407, 1824
Ksp22I TGATCA 3 cut(s) 142, 916, 1839
Kzo9I GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 3 cut(s) 1557, 1568, 1977
Lsp1109I GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
LweI GCATC 3 cut(s) 91, 730, 1582
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 3 cut(s) 605, 1440, 1734
MaeII ACGT 5 cut(s) 150, 875, 1204, 1210, 1780
MaeIII GTNAC 2 cut(s) 151, 1140
MalI GATC 7 cut(s) 144, 192, 771, 918, 947, 999, 1841
MboI GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
MhlI GDGCHC 2 cut(s) 1554, 1982
MluCI AATT 5 cut(s) 264, 680, 774, 1277, 1300
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 1955
MseI TTAA 6 cut(s) 204, 692, 779, 1053, 1349, 1989
MslI CAYNNNNRTG 2 cut(s) 1244, 1634
MspA1I CMGCKG 1 cut(s) 1136
MspR9I CCNGG 2 cut(s) 378, 1415
Mva1269I GAATGC 3 cut(s) 664, 825, 1066
MvaI CCWGG 2 cut(s) 378, 1415
MvnI CGCG 1 cut(s) 1824
MwoI GCNNNNNNNGC 6 cut(s) 455, 730, 850, 1406, 1709, 1718
NdeII GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
NlaIII CATG 9 cut(s) 71, 88, 389, 575, 625, 808, 1243, 1550, 1877
NlaIV GGNNCC 1 cut(s) 1103
NmuCI GTSAC 1 cut(s) 1140
PaeR7I CTCGAG 2 cut(s) 594, 1001
PagI TCATGA 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 744
PctI GAATGC 3 cut(s) 664, 825, 1066
PflMI CCANNNNNTGG 2 cut(s) 1352, 1940
PkrI GCNGC 9 cut(s) 259, 276, 843, 1066, 1135, 1264, 1465, 1702, 1714
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 2 cut(s) 1101, 1737
PshAI GACNNNNGTC 1 cut(s) 1477
Psp124BI GAGCTC 1 cut(s) 1554
Psp1406I AACGTT 1 cut(s) 875
Psp5II RGGWCCY 2 cut(s) 1101, 1737
Psp6I CCWGG 2 cut(s) 376, 1413
PspGI CCWGG 2 cut(s) 376, 1413
PspN4I GGNNCC 1 cut(s) 1103
PspPI GGNCC 4 cut(s) 1101, 1581, 1737, 1931
PspPPI RGGWCCY 2 cut(s) 1101, 1737
PstNI CAGNNNCTG 1 cut(s) 1571
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 4 cut(s) 628, 927, 1560, 1908
RsaNI GTAC 4 cut(s) 627, 926, 1559, 1907
RseI CAYNNNNRTG 2 cut(s) 1244, 1634
SacI GAGCTC 1 cut(s) 1554
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 6 cut(s) 204, 692, 779, 1053, 1349, 1989
SatI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
Sau3AI GATC 7 cut(s) 142, 190, 769, 916, 945, 997, 1839
Sau96I GGNCC 4 cut(s) 1101, 1581, 1737, 1931
ScaI AGTACT 1 cut(s) 1560
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 378, 1415
SduI GDGCHC 2 cut(s) 1554, 1982
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 3 cut(s) 91, 730, 1582
Sfr274I CTCGAG 2 cut(s) 594, 1001
SinI GGWCC 4 cut(s) 1101, 1581, 1737, 1931
SlaI CTCGAG 2 cut(s) 594, 1001
SmiMI CAYNNNNRTG 2 cut(s) 1244, 1634
SmlI CTYRAG 5 cut(s) 512, 594, 890, 1001, 1268
SmoI CTYRAG 5 cut(s) 512, 594, 890, 1001, 1268
Sse9I AATT 5 cut(s) 264, 680, 774, 1277, 1300
SsiI CCGC 3 cut(s) 303, 458, 1037
SspMI CTAG 3 cut(s) 605, 1440, 1734
SstI GAGCTC 1 cut(s) 1554
StyD4I CCNGG 2 cut(s) 376, 1413
TaaI ACNGT 4 cut(s) 184, 1153, 1768, 1940
TaiI ACGT 5 cut(s) 153, 878, 1207, 1213, 1783
TaqI TCGA 8 cut(s) 99, 135, 189, 548, 595, 1002, 1471, 1828
TasI AATT 5 cut(s) 264, 680, 774, 1277, 1300
TatI WGTACW 2 cut(s) 925, 1558
Tru1I TTAA 6 cut(s) 204, 692, 779, 1053, 1349, 1989
Tru9I TTAA 6 cut(s) 204, 692, 779, 1053, 1349, 1989
TseFI GTSAC 1 cut(s) 1140
TseI GCWGC 9 cut(s) 257, 274, 841, 1064, 1133, 1262, 1463, 1700, 1712
Tsp45I GTSAC 1 cut(s) 1140
TspGWI ACGGA 1 cut(s) 1552
Van91I CCANNNNNTGG 2 cut(s) 1352, 1940
VpaK11BI GGWCC 4 cut(s) 1101, 1581, 1737, 1931
XhoI CTCGAG 2 cut(s) 594, 1001
XspI CTAG 3 cut(s) 605, 1440, 1734
ZrmI AGTACT 1 cut(s) 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.