RchiOBHm_Chr6g0245371
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004361
Physical Location & Seq
Reverse (-)
1188832 .. 1192133
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 861 bp
ATGAATTTGCATCCAGATGATAAGCTAATGTTAGGCTCAAATGGTACGATCCCTCCCAACATTGTTGTCCGGTATGTCACAATATTGGCTCCAGCTGACTCTCCCAACACCGATGGAATTGATCCAGATTCAAGCTCTAATGTCTGCATAGAGGACTCGTACATATCTACTGGAGATGATCTTGTGGCTGTAAAAAGTGGATGGGATGAGTATGGGATTGCTTATGGTCACCCTAGTTCCGACATTACCATCCGTCGGATCAGAGGATCATCCCCATTTTCTGGAATTGCAATAGGAAGTGAAACCTCTGGTGGAGTGGAGAATGTATTTGCCGAACACATAAACCTTCACAACGTAGGAGTTGGTATCCATATAAAAACAAACATCTGTAGGGGAGGCTTCATAAGAAACATAACAGTTTCAAATGTGTTCATGGAAAAGGCACGGAAGGGTATAAAGATTGCAGGAGATGTTGGAGACCACCCTGATGACAAATTCAATCCAAATGCACTCCCAGTGGTAAAGGGTATCACATTAACAGACATCTGGGGTATACAAGTTCTGCAGGCAGGGCCTCAAGAACTCCCCTTTCACCGGAATCTTTCTTTCCAACATCAATCTCCATGGCATGACCGCAACAACAAGAACACCTCCATGGAAGTGCTCAGATGTCAGCGGGGCTGCTCATCTGGTGAGCCCCATCCAATGCTCGGAGTTGACCAGTGGCCAACACGCAACTTCATGCTCCAACTACTAAAACAAAGTCTGCATAACTCTTCTATATCCTCCTCGAAACTTGAGAAGAATCTGAGTTTTTATCTTTCCTTCTGTAATGCAAAATTTACTATATACCAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

286

Amino Acids

31.48

Weight (kDa)

6.59

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 20 - 184 2.3e-23 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AccI GTMKAC 1 cut(s) 553
AciI CCGC 2 cut(s) 634, 676
AclWI GGATC 4 cut(s) 43, 116, 266, 274
AcoI YGGCCR 1 cut(s) 725
AcsI RAATTY 3 cut(s) 4, 494, 839
AfaI GTAC 2 cut(s) 46, 161
AfiI CCNNNNNNNGG 4 cut(s) 255, 281, 594, 710
AgsI TTSAA 3 cut(s) 132, 423, 499
AluBI AGCT 3 cut(s) 25, 95, 135
AluI AGCT 3 cut(s) 25, 95, 135
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 4 cut(s) 43, 116, 266, 274
AoxI GGCC 2 cut(s) 572, 725
ApeKI GCWGC 1 cut(s) 681
ApoI RAATTY 3 cut(s) 4, 494, 839
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 3 cut(s) 221, 584, 704
BalI TGGCCA 1 cut(s) 727
BanII GRGCYC 1 cut(s) 699
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 668
BccI CCATC 4 cut(s) 107, 195, 257, 708
BciVI GTATCC 1 cut(s) 377
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 2 cut(s) 388, 563
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 1 cut(s) 682
BlsI GCNGC 1 cut(s) 683
BmgT120I GGNCC 1 cut(s) 572
BmiI GGNNCC 1 cut(s) 90
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 75, 192
BpuEI CTTGAG 2 cut(s) 561, 818
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 623, 654
BsaWI WCCGGW 2 cut(s) 69, 594
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 281, 594, 710
Bse1I ACTGG 3 cut(s) 175, 515, 721
BseDI CCNNGG 2 cut(s) 623, 654
BseGI GGATG 6 cut(s) 10, 206, 211, 249, 269, 700
BseLI CCNNNNNNNGG 4 cut(s) 255, 281, 594, 710
BseMII CTCAG 2 cut(s) 679, 800
BseNI ACTGG 3 cut(s) 175, 515, 721
BseRI GAGGAG 1 cut(s) 778
BseXI GCAGC 1 cut(s) 668
BshFI GGCC 2 cut(s) 574, 727
BsiHKAI GWGCWC 1 cut(s) 666
BsiSI CCGG 2 cut(s) 70, 595
BslI CCNNNNNNNGG 4 cut(s) 255, 281, 594, 710
BsmAI GTCTC 1 cut(s) 471
BsnI GGCC 2 cut(s) 574, 727
Bso31I GGTCTC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 666, 699
Bsp143I GATC 5 cut(s) 48, 121, 178, 258, 266
Bsp19I CCATGG 2 cut(s) 623, 654
BspACI CCGC 2 cut(s) 634, 676
BspANI GGCC 2 cut(s) 574, 727
BspCNI CTCAG 2 cut(s) 678, 801
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 567
BspPI GGATC 4 cut(s) 43, 116, 266, 274
BspTNI GGTCTC 1 cut(s) 471
BsrI ACTGG 3 cut(s) 175, 515, 721
BssECI CCNNGG 2 cut(s) 623, 654
BssMI GATC 5 cut(s) 48, 121, 178, 258, 266
BssNAI GTATAC 1 cut(s) 554
BssT1I CCWWGG 2 cut(s) 623, 654
Bst1107I GTATAC 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 665, 809
BstDSI CCRYGG 2 cut(s) 623, 654
BstEII GGTNACC 1 cut(s) 227
BstF5I GGATG 6 cut(s) 10, 206, 211, 249, 269, 700
BstKTI GATC 5 cut(s) 51, 124, 181, 261, 269
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 5 cut(s) 48, 121, 178, 258, 266
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstPI GGTNACC 1 cut(s) 227
BstSFI CTRYAG 2 cut(s) 388, 563
BstV1I GCAGC 1 cut(s) 668
BstZ17I GTATAC 1 cut(s) 554
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 574, 727
BtgI CCRYGG 2 cut(s) 623, 654
BtsCI GGATG 6 cut(s) 10, 206, 211, 249, 269, 700
BtsIMutI CAGTG 2 cut(s) 522, 728
Cac8I GCNNGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 572
Csp6I GTAC 2 cut(s) 45, 160
CviAII CATG 5 cut(s) 433, 624, 629, 655, 742
CviQI GTAC 2 cut(s) 45, 160
DdeI CTNAG 2 cut(s) 665, 809
DpnI GATC 5 cut(s) 50, 123, 180, 260, 268
DpnII GATC 5 cut(s) 48, 121, 178, 258, 266
EaeI YGGCCR 1 cut(s) 725
Eam1104I CTCTTC 1 cut(s) 781
EarI CTCTTC 1 cut(s) 781
Eco130I CCWWGG 2 cut(s) 623, 654
Eco24I GRGCYC 1 cut(s) 699
Eco31I GGTCTC 1 cut(s) 471
Eco91I GGTNACC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 572
EcoO65I GGTNACC 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 623, 654
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 2 cut(s) 623, 654
FaeI CATG 5 cut(s) 436, 627, 632, 658, 745
FatI CATG 5 cut(s) 432, 623, 628, 654, 741
FauI CCCGC 1 cut(s) 669
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 1 cut(s) 682
FokI GGATG 5 cut(s) 213, 218, 236, 256, 687
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 1 cut(s) 682
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 682
GsuI CTGGAG 2 cut(s) 75, 192
HaeIII GGCC 2 cut(s) 574, 727
HapII CCGG 2 cut(s) 70, 595
Hin1II CATG 5 cut(s) 436, 627, 632, 658, 745
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HinfI GANTC 5 cut(s) 98, 128, 155, 598, 805
HpaII CCGG 2 cut(s) 70, 595
HphI GGTGA 3 cut(s) 221, 584, 704
Hpy166II GTNNAC 2 cut(s) 554, 718
Hpy188I TCNGA 6 cut(s) 241, 258, 263, 668, 713, 810
Hpy188III TCNNGA 4 cut(s) 14, 125, 282, 578
Hpy8I GTNNAC 2 cut(s) 554, 718
Hpy99I CGWCG 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 356, 442, 835
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 8 cut(s) 10, 147, 290, 464, 509, 565, 769, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 2 cut(s) 665, 809
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 5 cut(s) 436, 627, 632, 658, 745
Kzo9I GATC 5 cut(s) 48, 121, 178, 258, 266
LmnI GCTCC 2 cut(s) 94, 750
Lsp1109I GCAGC 1 cut(s) 668
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 2 cut(s) 76, 227
MalI GATC 5 cut(s) 50, 123, 180, 260, 268
MboI GATC 5 cut(s) 48, 121, 178, 258, 266
MboII GAAGA 2 cut(s) 768, 814
MhlI GDGCHC 2 cut(s) 666, 699
MlsI TGGCCA 1 cut(s) 727
MluCI AATT 5 cut(s) 4, 117, 285, 494, 839
MluNI TGGCCA 1 cut(s) 727
MlyI GAGTC 2 cut(s) 92, 149
MmeI TCCRAC 5 cut(s) 236, 264, 454, 634, 772
MnlI CCTC 9 cut(s) 63, 145, 257, 316, 389, 585, 661, 796, 799
Mox20I TGGCCA 1 cut(s) 727
MscI TGGCCA 1 cut(s) 727
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 4 cut(s) 15, 486, 653, 659
Msp20I TGGCCA 1 cut(s) 727
MspA1I CMGCKG 2 cut(s) 95, 676
MspI CCGG 2 cut(s) 70, 595
MwoI GCNNNNNNNGC 1 cut(s) 571
NcoI CCATGG 2 cut(s) 623, 654
NdeII GATC 5 cut(s) 48, 121, 178, 258, 266
NlaIII CATG 5 cut(s) 436, 627, 632, 658, 745
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 76, 227
PfeI GAWTC 3 cut(s) 128, 598, 805
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 683
PleI GAGTC 2 cut(s) 92, 149
PpsI GAGTC 2 cut(s) 92, 149
PspEI GGTNACC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 572
PstI CTGCAG 1 cut(s) 567
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 46, 161
RsaNI GTAC 2 cut(s) 45, 160
RseI CAYNNNNRTG 4 cut(s) 15, 486, 653, 659
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 1 cut(s) 682
Sau3AI GATC 5 cut(s) 48, 121, 178, 258, 266
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 2 cut(s) 92, 149
SduI GDGCHC 2 cut(s) 666, 699
SetI ASST 7 cut(s) 27, 97, 137, 308, 348, 357, 653
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 2 cut(s) 388, 563
SmiMI CAYNNNNRTG 4 cut(s) 15, 486, 653, 659
SmlI CTYRAG 2 cut(s) 576, 797
SmoI CTYRAG 2 cut(s) 576, 797
Sse9I AATT 5 cut(s) 4, 117, 285, 494, 839
SsiI CCGC 2 cut(s) 634, 676
SspI AATATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 623, 654
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 791
TasI AATT 5 cut(s) 4, 117, 285, 494, 839
TfiI GAWTC 3 cut(s) 128, 598, 805
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 2 cut(s) 522, 728
TseFI GTSAC 2 cut(s) 76, 227
TseI GCWGC 1 cut(s) 681
Tsp45I GTSAC 2 cut(s) 76, 227
TspDTI ATGAA 4 cut(s) 17, 391, 421, 730
TspGWI ACGGA 2 cut(s) 242, 460
TspRI CASTG 2 cut(s) 522, 728
Van91I CCANNNNNTGG 1 cut(s) 281
XapI RAATTY 3 cut(s) 4, 494, 839
XmiI GTMKAC 1 cut(s) 553
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.