Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013605

Physical Location & Seq

Genomic Coordinates Forward (+)

10914601 .. 10917396

Gene Structure 2796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTACAGACCGGTGATGCTCATGGCCTCAGATTACCAGAGCACAACCCAAGATTCTTCCCGTTTTGGGAGCGAAGAATCCAAAAAACCCGAAACCACCACCAAAACCAGTACTAGCAGCAAAGGAAAATCAAGGAAGTCAGCTAAACCTAAAAGGCCAAAGCCCCAGAGAGGTGTTGGTGTGGCTCAGCTGGAGCGCCTCCGTCTCCAACAGAGAGGTGTGGGTGTGACCAAATTAACCCAAATGCCCCTCCCCCATATCCTACCGCAACCTCAACCTCAGACCCAAGTTATCCAAAATGTTGGTTTTCCAGATCACCAGCAGCGCCAGTTTCAATACTACCCAAACCCAGAAACCCGCGCCGACCCGCTTCTCAGCATTCCGGTACTCTACGGTGCGTCCAACTACGATGGAGCCATGAGTACTGGCTCTGGTTTGGTGGGCTTGGACCGCACCAGTTTGTTTGTTCAGACAGTTAGTGGGAATGGTGGTTCCGCTGGGTTTGGTTATGGGTACAATGTTCGTCTTCAAAATGATGTTGGTGGGTTGGTTATGGATCCGAACCAGTACGGTGTCGTTGGGGCTGGGGCTCCGAATCGTGGGGCTGTGTATGAGATCTCGAACGAGCTCTCTTCAATACCAAAGATGAAGCAGAAACCCTCCTCTTCTTCTTCATCTGAATATTGCTGCTGTTGCAAGCAGAAGAAAAGATTCAATTGTGGAAACAACATGGGTTTTGGGGAATCTCCGGCTGTCTTTCCGATGGTCAACAGTTCTGATCTTCCCGGATTCGACCAACAAAACATCCCAAATGTCCGGGTAGCTGGGGAAATCGGCGTTGGTTTCAATGCTGGTACTTACTTGGACCGCCGCTCCAGTCTTGTTGATGAGAGTGTGGAGGTTAGGGCAGTTCACAGGAAGGGGAGACAAGCAGGTGGTGATATCATGAAGGAGTATGAATTCTTTCCTGATCACAACAACAACTCTTCTTCAGTAGTCTCATCAGGCACATATCCCATGGAGCATAATATAGTTGCTTCATCAACTAATTCTTCTTCAGTTGGTAGATCATCAGAAGCTTCTGATCAACATCTTGGTTCTGCTTTTGAGGGGGCTGACATGATGATGATGATGATGAGCAGTGGCCATAGTCCTGTTGATTTGTCACTCAAATTGTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NOZZLE

Protein Analysis

394

Amino Acids

42.63

Weight (kDa)

8.94

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05340 FvH4_3g04110
malus_domestica	MD03G1216800.v1.1 MD11G1234600.v1.1
prunus_persica	Prupe.4G192500_v2.0.a1 Prupe.6G133800_v2.0.a1 Prupe.6G133900_v2.0.a1 Prupe.8G142800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0255571
rosa_laevigata	RLG00000014830
rosa_multiflora	Rmu_sc0004935.1_g000041
rosa_roxburghii	Rroxscaffold_7G00209880
rosa_rugosa	Rorug05G0559500
rosa_samantha	Rh6AG078000 Rh6BG070100 Rh6CG068900 Rh6DG065800
rosa_wichuraiana	Rw6G006710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	923
Acc36I	ACCTGC	1 cut(s)	923
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	1 cut(s)	360
AciI	CCGC	7 cut(s)	266, 358, 368, 451, 495, 868, 871
AclWI	GGATC	2 cut(s)	551, 564
AcoI	YGGCCR	1 cut(s)	1144
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	2 cut(s)	975, 1041
AfaI	GTAC	7 cut(s)	5, 112, 387, 424, 515, 569, 856
AfiI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	5 cut(s)	335, 530, 636, 715, 847
AjuI	GAANNNNNNNTTGG	2 cut(s)	822, 854
AloI	GAACNNNNNNTCC	2 cut(s)	475, 507
AluBI	AGCT	5 cut(s)	143, 190, 628, 824, 1079
AluI	AGCT	5 cut(s)	143, 190, 628, 824, 1079
Alw21I	GWGCWC	2 cut(s)	44, 630
Alw26I	GTCTC	3 cut(s)	209, 919, 1003
AlwI	GGATC	2 cut(s)	551, 564
AoxI	GGCC	3 cut(s)	24, 155, 1144
ApeKI	GCWGC	3 cut(s)	117, 322, 687
ApoI	RAATTY	1 cut(s)	959
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	2 cut(s)	710, 963
AspLEI	GCGC	3 cut(s)	198, 327, 362
AspS9I	GGNCC	2 cut(s)	448, 865
AsuC2I	CCSGG	2 cut(s)	786, 818
AsuHPI	GGTGA	3 cut(s)	25, 308, 950
AvaII	GGWCC	2 cut(s)	448, 865
BalI	TGGCCA	1 cut(s)	1146
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	2 cut(s)	592, 630
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	2 cut(s)	44, 630
BbvI	GCAGC	3 cut(s)	129, 334, 674
BccI	CCATC	2 cut(s)	404, 757
BclI	TGATCA	2 cut(s)	970, 1084
BcnI	CCSGG	2 cut(s)	786, 818
BcoDI	GTCTC	3 cut(s)	209, 919, 1003
BfaI	CTAG	2 cut(s)	114, 1183
BfoI	RGCGCY	2 cut(s)	199, 328
BfuAI	ACCTGC	1 cut(s)	923
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	4 cut(s)	118, 323, 688, 871
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	4 cut(s)	119, 324, 689, 872
BmcAI	AGTACT	2 cut(s)	112, 424
Bme1390I	CCNGG	2 cut(s)	786, 818
Bme18I	GGWCC	2 cut(s)	448, 865
BmgT120I	GGNCC	2 cut(s)	448, 865
BmiI	GGNNCC	4 cut(s)	415, 493, 558, 591
BmrFI	CCNGG	2 cut(s)	786, 818
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	2 cut(s)	212, 859
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	786, 818
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaJI	CCNNGG	1 cut(s)	1017
BsaWI	WCCGGW	2 cut(s)	10, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 170, 599
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	6 cut(s)	108, 328, 430, 456, 565, 876
Bse8I	GATNNNNATC	1 cut(s)	1089
BseDI	CCNNGG	1 cut(s)	1017
BseGI	GGATG	1 cut(s)	804
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
BseMII	CTCAG	4 cut(s)	42, 200, 293, 388
BseNI	ACTGG	6 cut(s)	108, 328, 430, 456, 565, 876
BseRI	GAGGAG	1 cut(s)	652
BseXI	GCAGC	3 cut(s)	129, 334, 674
BseYI	CCCAGC	3 cut(s)	497, 584, 824
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	26, 157, 1146
BshTI	ACCGGT	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	44, 630
BsiSI	CCGG	5 cut(s)	11, 383, 749, 786, 817
BslI	CCNNNNNNNGG	3 cut(s)	66, 170, 599
BsmAI	GTCTC	3 cut(s)	209, 919, 1003
BsmBI	CGTCTC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	26, 157, 1146
Bsp1286I	GDGCHC	3 cut(s)	44, 592, 630
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
Bsp1720I	GCTNAGC	1 cut(s)	186
Bsp19I	CCATGG	1 cut(s)	1017
BspACI	CCGC	7 cut(s)	266, 358, 368, 451, 495, 868, 871
BspANI	GGCC	3 cut(s)	26, 157, 1146
BspCNI	CTCAG	4 cut(s)	41, 199, 292, 387
BspFNI	CGCG	1 cut(s)	360
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	4 cut(s)	415, 493, 558, 591
BspMI	ACCTGC	1 cut(s)	923
BspPI	GGATC	2 cut(s)	551, 564
BsrBI	CCGCTC	1 cut(s)	873
BsrFI	RCCGGY	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	6 cut(s)	108, 328, 430, 456, 565, 876
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	1017
BssMI	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
BssT1I	CCWWGG	1 cut(s)	1017
Bst4CI	ACNGT	4 cut(s)	395, 475, 572, 773
Bst6I	CTCTTC	3 cut(s)	637, 670, 991
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	698
BstDEI	CTNAG	4 cut(s)	28, 186, 279, 374
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	1 cut(s)	804
BstFNI	CGCG	1 cut(s)	360
BstH2I	RGCGCY	2 cut(s)	199, 328
BstHHI	GCGC	3 cut(s)	198, 327, 362
BstKTI	GATC	7 cut(s)	316, 559, 618, 781, 973, 1070, 1087
BstMAI	GTCTC	3 cut(s)	209, 919, 1003
BstMBI	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
BstMWI	GCNNNNNNNGC	2 cut(s)	450, 693
BstSCI	CCNGG	2 cut(s)	784, 816
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	129, 334, 674
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	556, 615
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	2 cut(s)	556, 615
BsuRI	GGCC	3 cut(s)	26, 157, 1146
BtgI	CCRYGG	1 cut(s)	1017
BtsCI	GGATG	1 cut(s)	804
BtsI	GCAGTG	1 cut(s)	1147
BtsIMutI	CAGTG	1 cut(s)	1147
BveI	ACCTGC	1 cut(s)	923
Cac8I	GCNNGC	1 cut(s)	698
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	3 cut(s)	198, 327, 362
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	448, 865
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	6 cut(s)	22, 418, 730, 946, 1018, 1120
CviQI	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
DdeI	CTNAG	4 cut(s)	28, 186, 279, 374
DpnI	GATC	7 cut(s)	315, 558, 617, 780, 972, 1069, 1086
DpnII	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
EaeI	YGGCCR	1 cut(s)	1144
Eam1104I	CTCTTC	3 cut(s)	637, 670, 991
EarI	CTCTTC	3 cut(s)	637, 670, 991
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	1017
Eco24I	GRGCYC	2 cut(s)	592, 630
Eco32I	GATATC	1 cut(s)	943
Eco47I	GGWCC	2 cut(s)	448, 865
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	2 cut(s)	975, 1041
EcoICRI	GAGCTC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	959
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	1 cut(s)	1017
EcoT38I	GRGCYC	2 cut(s)	592, 630
ErhI	CCWWGG	1 cut(s)	1017
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	6 cut(s)	25, 421, 733, 949, 1021, 1123
FatI	CATG	6 cut(s)	21, 417, 729, 945, 1017, 1119
FauI	CCCGC	2 cut(s)	365, 375
FbaI	TGATCA	2 cut(s)	970, 1084
Fnu4HI	GCNGC	4 cut(s)	118, 323, 688, 871
FokI	GGATG	1 cut(s)	791
FriOI	GRGCYC	2 cut(s)	592, 630
Fsp4HI	GCNGC	4 cut(s)	118, 323, 688, 871
FspBI	CTAG	2 cut(s)	114, 1183
GlaI	GCGC	3 cut(s)	197, 326, 361
GluI	GCNGC	4 cut(s)	118, 323, 688, 871
GsaI	CCCAGC	3 cut(s)	501, 588, 828
GsuI	CTGGAG	2 cut(s)	212, 859
HaeII	RGCGCY	2 cut(s)	199, 328
HaeIII	GGCC	3 cut(s)	26, 157, 1146
HapII	CCGG	5 cut(s)	11, 383, 749, 786, 817
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	3 cut(s)	198, 327, 362
Hin1II	CATG	6 cut(s)	25, 421, 733, 949, 1021, 1123
Hin6I	GCGC	3 cut(s)	196, 325, 360
HinP1I	GCGC	3 cut(s)	196, 325, 360
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	1 cut(s)	1077
HinfI	GANTC	6 cut(s)	53, 77, 595, 711, 743, 789
HpaII	CCGG	5 cut(s)	11, 383, 749, 786, 817
HphI	GGTGA	3 cut(s)	25, 308, 950
Hpy166II	GTNNAC	2 cut(s)	769, 913
Hpy188III	TCNNGA	4 cut(s)	311, 619, 946, 968
Hpy8I	GTNNAC	2 cut(s)	769, 913
HpyAV	CCTTC	2 cut(s)	913, 943
HpyCH4III	ACNGT	4 cut(s)	395, 475, 572, 773
HpyCH4V	TGCA	1 cut(s)	696
HpyF10VI	GCNNNNNNNGC	2 cut(s)	450, 693
HpyF3I	CTNAG	4 cut(s)	28, 186, 279, 374
Hsp92II	CATG	6 cut(s)	25, 421, 733, 949, 1021, 1123
HspAI	GCGC	3 cut(s)	196, 325, 360
Ksp22I	TGATCA	2 cut(s)	970, 1084
Kzo9I	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
LmnI	GCTCC	6 cut(s)	69, 193, 413, 595, 878, 1021
Lsp1109I	GCAGC	3 cut(s)	129, 334, 674
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	2 cut(s)	114, 1183
MaeIII	GTNAC	2 cut(s)	226, 1164
MalI	GATC	7 cut(s)	315, 558, 617, 780, 972, 1069, 1086
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
MfeI	CAATTG	1 cut(s)	715
MflI	RGATCY	2 cut(s)	556, 615
MhlI	GDGCHC	3 cut(s)	44, 592, 630
MlsI	TGGCCA	1 cut(s)	1146
MluCI	AATT	5 cut(s)	233, 715, 959, 1048, 1172
MluNI	TGGCCA	1 cut(s)	1146
MmeI	TCCRAC	2 cut(s)	232, 426
Mox20I	TGGCCA	1 cut(s)	1146
MroXI	GAANNNNTTC	2 cut(s)	710, 963
MscI	TGGCCA	1 cut(s)	1146
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	1124
Msp20I	TGGCCA	1 cut(s)	1146
MspA1I	CMGCKG	2 cut(s)	190, 497
MspI	CCGG	5 cut(s)	11, 383, 749, 786, 817
MspR9I	CCNGG	2 cut(s)	786, 818
MunI	CAATTG	1 cut(s)	715
Mva1269I	GAATGC	1 cut(s)	378
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	450, 693
NciI	CCSGG	2 cut(s)	786, 818
NcoI	CCATGG	1 cut(s)	1017
NdeII	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
NlaIII	CATG	6 cut(s)	25, 421, 733, 949, 1021, 1123
NlaIV	GGNNCC	4 cut(s)	415, 493, 558, 591
NmuCI	GTSAC	2 cut(s)	226, 1164
PagI	TCATGA	1 cut(s)	945
PaqCI	CACCTGC	1 cut(s)	923
PctI	GAATGC	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	710, 963
PfeI	GAWTC	6 cut(s)	53, 77, 595, 711, 743, 789
PfoI	TCCNGGA	1 cut(s)	784
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	4 cut(s)	119, 324, 689, 872
Psp124BI	GAGCTC	1 cut(s)	630
PspFI	CCCAGC	3 cut(s)	497, 584, 824
PspN4I	GGNNCC	4 cut(s)	415, 493, 558, 591
PspPI	GGNCC	2 cut(s)	448, 865
PsuI	RGATCY	2 cut(s)	556, 615
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	7 cut(s)	5, 112, 387, 424, 515, 569, 856
RsaNI	GTAC	7 cut(s)	4, 111, 386, 423, 514, 568, 855
RseI	CAYNNNNRTG	1 cut(s)	1124
SacI	GAGCTC	1 cut(s)	630
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	4 cut(s)	118, 323, 688, 871
Sau3AI	GATC	7 cut(s)	313, 556, 615, 778, 970, 1067, 1084
Sau96I	GGNCC	2 cut(s)	448, 865
ScaI	AGTACT	2 cut(s)	112, 424
ScrFI	CCNGG	2 cut(s)	786, 818
SduI	GDGCHC	3 cut(s)	44, 592, 630
SfaNI	GCATC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	448, 865
SmiMI	CAYNNNNRTG	1 cut(s)	1124
Sse9I	AATT	5 cut(s)	233, 715, 959, 1048, 1172
SsiI	CCGC	7 cut(s)	266, 358, 368, 451, 495, 868, 871
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	2 cut(s)	114, 1183
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	2 cut(s)	784, 816
StyI	CCWWGG	1 cut(s)	1017
TaaI	ACNGT	4 cut(s)	395, 475, 572, 773
TaqI	TCGA	2 cut(s)	620, 792
TasI	AATT	5 cut(s)	233, 715, 959, 1048, 1172
TatI	WGTACW	3 cut(s)	3, 110, 422
TauI	GCSGC	1 cut(s)	873
TfiI	GAWTC	6 cut(s)	53, 77, 595, 711, 743, 789
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	1147
TseFI	GTSAC	2 cut(s)	226, 1164
TseI	GCWGC	3 cut(s)	117, 322, 687
Tsp45I	GTSAC	2 cut(s)	226, 1164
TspDTI	ATGAA	5 cut(s)	662, 663, 962, 972, 1029
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	1147
VpaK11BI	GGWCC	2 cut(s)	448, 865
XapI	RAATTY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmnI	GAANNNNTTC	2 cut(s)	710, 963
XspI	CTAG	2 cut(s)	114, 1183
ZrmI	AGTACT	2 cut(s)	112, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.