RchiOBHm_Chr6g0263721

Dehydrodolichyl diphosphate syntase complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010111
Physical Location & Seq
Reverse (-)
18589553 .. 18595091
5539 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 774 bp
ATGGATTTGAAGATTCAAATGCAGAGGGCAAGGGCAACCTCTTTTGCTTCTTATACTGGCAATCTTGGGCTACTGCTCCTCTGGCATATTCTGCATCTTTTGGTCAGACTATGGTACTTTCTGTTGTGGATGGTTTGTGTGCTTGAGAGCTATCTCATTTCTGGTGGAATACTTAAGAAGTATAAAGCCCTTAACGTAGGTAAACTACGGTACCTGGCGATTGTAGTAGAAAGTGAAGAGGCATACGAAACTTCCAAAGTTATTGAGCTTCTGCAGTGGCTAGAAGCTATTGGCGTGAAACGTGTGTGCCTCTACGACACAGAAGGAGTGTTGAAGAAATCAAAAGAAGTCATCTTGACCAAACTGAAAAATGCAGTAGTATATGAGGACGGTTATCAAGATGAAAGCTTAGTTGACCAAATACGCATGTCTGTAGAATTTTGTTCATTCTCTGATGGAAAAGAAGCTATAACCAAAGCAGCTAACTTGCTCTTTGTGAAGTATTTGAAATTGGCGACACTACCTGGTGATCATGAAGAGAAAATCTTTACAGAACCTCACATGGATGATGCACTTAAAGCTATTGGTGGCAGAGGGCCGGACCCTGACCTCCTATTAGTTTATGGACCTGCAAGATGCCACCTTGGTTTTCCTGCATGGAGAATGCGATATACGGAGATTGTACACATGGGTCAGCTAATGCATATGAGATACGGTTCCCTAATTAAAGCCATTTACAGGTTCACCACTGTGCGCCAAAACTATGGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

29.51

Weight (kDa)

8.86

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 637
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AcsI RAATTY 1 cut(s) 437
AfaI GTAC 3 cut(s) 116, 212, 684
AfiI CCNNNNNNNGG 1 cut(s) 738
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 4 cut(s) 10, 17, 334, 508
AjnI CCWGG 2 cut(s) 213, 523
AleI CACNNNNGTG 1 cut(s) 749
AluBI AGCT 8 cut(s) 150, 268, 287, 408, 467, 482, 581, 697
AluI AGCT 8 cut(s) 150, 268, 287, 408, 467, 482, 581, 697
AoxI GGCC 1 cut(s) 596
ApeKI GCWGC 1 cut(s) 479
ApoI RAATTY 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 756
AspS9I GGNCC 3 cut(s) 596, 601, 626
AsuHPI GGTGA 2 cut(s) 539, 736
AvaII GGWCC 2 cut(s) 601, 626
BaeI ACNNNNGTAYC 2 cut(s) 194, 227
BanI GGYRCC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 491
BccI CCATC 2 cut(s) 124, 449
BciT130I CCWGG 2 cut(s) 215, 525
BclI TGATCA 1 cut(s) 529
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 2 cut(s) 272, 432
BfrI CTTAAG 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 637
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
Bme1390I CCNGG 2 cut(s) 215, 525
Bme18I GGWCC 2 cut(s) 601, 626
BmgT120I GGNCC 3 cut(s) 596, 601, 626
BmiI GGNNCC 3 cut(s) 212, 603, 718
BmrFI CCNGG 2 cut(s) 215, 525
BmsI GCATC 3 cut(s) 103, 559, 626
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 643
Bsc4I CCNNNNNNNGG 1 cut(s) 738
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 2 cut(s) 215, 525
BseDI CCNNGG 1 cut(s) 643
BseGI GGATG 2 cut(s) 135, 571
BseLI CCNNNNNNNGG 1 cut(s) 738
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 491
BshFI GGCC 1 cut(s) 598
BshNI GGYRCC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 599
BslI CCNNNNNNNGG 1 cut(s) 738
BsmI GAATGC 1 cut(s) 669
BsnI GGCC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 1 cut(s) 529
BspANI GGCC 1 cut(s) 598
BspHI TCATGA 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 212, 603, 718
BspMAI CTGCAG 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 210
BspTI CTTAAG 1 cut(s) 173
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 643
BssMI GATC 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 643
Bst2UI CCWGG 2 cut(s) 215, 525
Bst4CI ACNGT 4 cut(s) 210, 392, 716, 751
Bst6I CTCTTC 2 cut(s) 231, 531
BstAFI CTTAAG 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 91
BstAUI TGTACA 1 cut(s) 682
BstDEI CTNAG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 135, 571
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 1 cut(s) 532
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 3 cut(s) 82, 91, 578
BstNI CCWGG 2 cut(s) 215, 525
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 213, 523
BstSFI CTRYAG 2 cut(s) 272, 432
BstV1I GCAGC 1 cut(s) 491
BstXI CCANNNNNNTGG 1 cut(s) 764
BsuRI GGCC 1 cut(s) 598
BtsCI GGATG 2 cut(s) 135, 571
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 281, 747
BveI ACCTGC 1 cut(s) 637
CciI TCATGA 1 cut(s) 532
CfoI GCGC 1 cut(s) 756
Cfr13I GGNCC 3 cut(s) 596, 601, 626
CsiI ACCWGGT 1 cut(s) 523
Csp6I GTAC 3 cut(s) 115, 211, 683
CviAII CATG 5 cut(s) 427, 533, 562, 657, 688
CviQI GTAC 3 cut(s) 115, 211, 683
DdeI CTNAG 1 cut(s) 409
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 231, 531
EarI CTCTTC 2 cut(s) 231, 531
Eco130I CCWWGG 1 cut(s) 643
Eco47I GGWCC 2 cut(s) 601, 626
EcoRII CCWGG 2 cut(s) 213, 523
EcoT14I CCWWGG 1 cut(s) 643
EcoT22I ATGCAT 1 cut(s) 705
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 5 cut(s) 430, 536, 565, 660, 691
FatI CATG 5 cut(s) 426, 532, 561, 656, 687
FauNDI CATATG 1 cut(s) 705
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 2 cut(s) 142, 578
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 1 cut(s) 281
GlaI GCGC 1 cut(s) 755
GluI GCNGC 1 cut(s) 480
HaeIII GGCC 1 cut(s) 598
HapII CCGG 1 cut(s) 599
HhaI GCGC 1 cut(s) 756
Hin1II CATG 5 cut(s) 430, 536, 565, 660, 691
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 1 cut(s) 13
HpaII CCGG 1 cut(s) 599
HphI GGTGA 2 cut(s) 539, 736
Hpy166II GTNNAC 4 cut(s) 203, 415, 685, 744
Hpy188I TCNGA 2 cut(s) 107, 454
Hpy188III TCNNGA 3 cut(s) 355, 398, 533
Hpy8I GTNNAC 4 cut(s) 203, 415, 685, 744
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 4 cut(s) 210, 392, 716, 751
HpyCH4IV ACGT 2 cut(s) 195, 301
HpyCH4V TGCA 8 cut(s) 22, 94, 274, 374, 572, 632, 656, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 91, 578
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 2 cut(s) 195, 301
Hsp92II CATG 5 cut(s) 430, 536, 565, 660, 691
HspAI GCGC 1 cut(s) 754
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 491
LweI GCATC 3 cut(s) 103, 559, 626
MabI ACCWGGT 1 cut(s) 523
MaeI CTAG 1 cut(s) 281
MaeII ACGT 2 cut(s) 195, 301
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 4 cut(s) 22, 248, 346, 548
MluCI AATT 3 cut(s) 437, 509, 723
MnlI CCTC 9 cut(s) 18, 49, 89, 232, 320, 379, 567, 587, 620
Mph1103I ATGCAT 1 cut(s) 705
MseI TTAA 4 cut(s) 174, 192, 576, 726
MslI CAYNNNNRTG 2 cut(s) 564, 749
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 215, 525
Mva1269I GAATGC 1 cut(s) 669
MvaI CCWGG 2 cut(s) 215, 525
MwoI GCNNNNNNNGC 3 cut(s) 82, 91, 578
NdeI CATATG 1 cut(s) 705
NdeII GATC 1 cut(s) 529
NlaIII CATG 5 cut(s) 430, 536, 565, 660, 691
NlaIV GGNNCC 3 cut(s) 212, 603, 718
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 749
PagI TCATGA 1 cut(s) 532
PctI GAATGC 1 cut(s) 669
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 213, 523
PspGI CCWGG 2 cut(s) 213, 523
PspN4I GGNNCC 3 cut(s) 212, 603, 718
PspPI GGNCC 3 cut(s) 596, 601, 626
PstI CTGCAG 1 cut(s) 276
RsaI GTAC 3 cut(s) 116, 212, 684
RsaNI GTAC 3 cut(s) 115, 211, 683
RseI CAYNNNNRTG 2 cut(s) 564, 749
SaqAI TTAA 4 cut(s) 174, 192, 576, 726
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 3 cut(s) 596, 601, 626
ScrFI CCNGG 2 cut(s) 215, 525
SexAI ACCWGGT 1 cut(s) 523
SfaNI GCATC 3 cut(s) 103, 559, 626
SfcI CTRYAG 2 cut(s) 272, 432
SinI GGWCC 2 cut(s) 601, 626
SmiMI CAYNNNNRTG 2 cut(s) 564, 749
SmlI CTYRAG 2 cut(s) 143, 173
SmoI CTYRAG 2 cut(s) 143, 173
Sse9I AATT 3 cut(s) 437, 509, 723
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 213, 523
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 4 cut(s) 210, 392, 716, 751
TaiI ACGT 2 cut(s) 198, 304
TasI AATT 3 cut(s) 437, 509, 723
TatI WGTACW 1 cut(s) 682
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 4 cut(s) 174, 192, 576, 726
Tru9I TTAA 4 cut(s) 174, 192, 576, 726
TscAI CASTG 2 cut(s) 281, 754
TseI GCWGC 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 417, 435, 549
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 2 cut(s) 281, 754
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 601, 626
XapI RAATTY 1 cut(s) 437
XceI RCATGY 1 cut(s) 430
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.