Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011824

Physical Location & Seq

Genomic Coordinates Reverse (-)

67775379 .. 67777739

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGGAAACAATTGAGTTGGGGTGGCCTGATCAGATTGAGGGGAATGGTAATTATTCTGGGAGTTGCTCTAATTGGATATTTTGGGGTACTTGGGGAGGTCAACATGTTCTCTAAACAGAAGGTTTTGGAAGTTGAAAGAAAATTAAGCCAACTTAGAAAACCTGCAGTTAAAAGCATTCAGAGTGAAGATGGTGATACCATTGATTGCATTGACATTTACAAGCAGCCAGCTTTTGATCATCCTGCTCTTAAAAACCACACCATCCAGATGGCACCTAGTTATGATCCAACAAAGGAGACACAGTCGACAATGACCAAATTCGAAAGATTAGAGAGGAAGAGGAACCAACAGTCTTCCATGATGGTGACTCAACCATGGAAGAAAAATGGAAGCTGTCCACAAGGAACAATCCCTGTGCGAAGAATCAGAAAAGAGTACCTGCTCCGAGCTAGCTCGGTTGAGGCCTATGGAAGGAAGAAACATAGCTCTTCTCGTCCTCATGTTTCGCATGAGTCTAGTACTAGTGACAGCAACAGAACTGTGAACGTCCAACAAGCAAATCACTCGGCAATATTGCTCACCGAAGGATACAGATACAATGGAGCCAAAGGAGATATCAAAGTTTGGACTCCTAATGTTGATTTTGACGATGACTACACTACTTCTAAAGTTTGCCTCATCAATGGTCCTTATTGGGCATTTGAGAGTGTTGAATCTGGATGGGCGGTGAATCCGAGTGTGTACGGAGACAGGCAAACTCGATTTATGGTGTATTGGACGGTCGACGGTTCAAAGAAAACAGGTTGCTTTGATCTCACTTGTCCTGGATTTGTTCAAACTAGCCATGAGATTGCTCTTGGTGCTGCAATTTACCCAATCTCTGTTCCTTACGGCCTTCCATACGAAATCATCGTCTATGTCTTCAAGGACCCCGTAACAAGCAATTGGTGGGTGCAATACGGGGAGAAAATCAACATCGGATACTGGCCGCCGGAGCTGTTTATGGCGTTGCGTGTCCACGCAGAAGCGGTTGAGTGGGGAGGTGAAGTGTATAGTGCAAGAGTGGGTACTAATCCGCACACAAAAACAGGAATGGGTAATGGAAACTTTCCTGATGGCATTTTTGGGGATTCAGGGGTCATTAAAAGAATCAGAATTCATGACAATTCAGCTGAACTCAAATTCCCGGAATGGGTTGAGACTTATGCGGACGAGTTCAACTGTTATGATGTTGATTATGTGTCCGATTACCTTGAAGATCCTGAGTTCTATTATGGAGGGCCTGGCCATAATCCCAAGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Neprosin Neprosin_AP

Protein Analysis

436

Amino Acids

49.29

Weight (kDa)

6.61

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neprosin_AP	PF14365	59 - 173	1e-38	Neprosin activation peptide
Neprosin	PF03080	218 - 429	2.5e-66	Neprosin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48230 AT5G19170
fragaria_vesca	FvH4_2g32290
prunus_persica	Prupe.1G415600_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415700_v2.0.a1 Prupe.1G415800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0310411
rosa_laevigata	RLG00000010484
rosa_multiflora	Rmu_co8348255.1_g000001 Rmu_sc0002896.1_g000001
rosa_roxburghii	Rroxscaffold_7G00158540
rosa_rugosa	Rorug06G0380000
rosa_samantha	Rh6AG494000 Rh6BG503700 Rh6CG508900 Rh6DG494900
rosa_wichuraiana	Rw2G024720 Rw6G042980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	172, 450
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	2 cut(s)	308, 786
AciI	CCGC	5 cut(s)	728, 992, 1031, 1079, 1211
AclWI	GGATC	2 cut(s)	281, 1256
AcoI	YGGCCR	2 cut(s)	989, 1288
AcsI	RAATTY	3 cut(s)	320, 1158, 1184
AfaI	GTAC	5 cut(s)	90, 440, 523, 746, 1072
AfiI	CCNNNNNNNGG	2 cut(s)	474, 1195
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	7 cut(s)	137, 716, 795, 839, 928, 1222, 1259
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	826, 1285
AloI	GAACNNNNNNTCC	2 cut(s)	1170, 1202
AluBI	AGCT	7 cut(s)	233, 396, 452, 456, 489, 1000, 1175
AluI	AGCT	7 cut(s)	233, 396, 452, 456, 489, 1000, 1175
Alw26I	GTCTC	3 cut(s)	293, 744, 1196
AlwI	GGATC	2 cut(s)	281, 1256
AoxI	GGCC	6 cut(s)	25, 465, 895, 989, 1283, 1288
ApeKI	GCWGC	2 cut(s)	226, 866
ApoI	RAATTY	3 cut(s)	320, 1158, 1184
ArsI	GACNNNNNNTTYG	2 cut(s)	900, 932
AspS9I	GGNCC	3 cut(s)	689, 931, 1283
AsuC2I	CCSGG	1 cut(s)	1190
AsuHPI	GGTGA	5 cut(s)	206, 379, 574, 742, 1058
AsuII	TTCGAA	1 cut(s)	324
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	689, 931
BaeGI	GKGCMC	1 cut(s)	1307
BalI	TGGCCA	1 cut(s)	1290
BanI	GGYRCC	1 cut(s)	274
BbsI	GAAGAC	2 cut(s)	348, 916
BbvI	GCAGC	2 cut(s)	238, 853
BccI	CCATC	6 cut(s)	185, 265, 272, 358, 717, 1112
BceAI	ACGGC	1 cut(s)	910
BcgI	CGANNNNNNTGC	2 cut(s)	549, 583
BciT130I	CCWGG	2 cut(s)	828, 1287
BciVI	GTATCC	2 cut(s)	584, 977
BclI	TGATCA	2 cut(s)	30, 238
BcnI	CCSGG	1 cut(s)	1190
BcoDI	GTCTC	3 cut(s)	293, 744, 1196
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	5 cut(s)	279, 453, 519, 525, 843
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	2 cut(s)	172, 450
BfuI	GTATCC	2 cut(s)	584, 977
BisI	GCNGC	3 cut(s)	227, 867, 992
BlsI	GCNGC	3 cut(s)	228, 868, 993
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	3 cut(s)	828, 1190, 1287
Bme18I	GGWCC	2 cut(s)	689, 931
BmgT120I	GGNCC	3 cut(s)	689, 931, 1283
BmiI	GGNNCC	4 cut(s)	276, 347, 607, 933
BmrFI	CCNGG	3 cut(s)	828, 1190, 1287
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	2 cut(s)	348, 916
Bpu14I	TTCGAA	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	1190
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 1035, 1065
Bsc4I	CCNNNNNNNGG	2 cut(s)	474, 1195
Bse1I	ACTGG	1 cut(s)	992
BseBI	CCWGG	2 cut(s)	828, 1287
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	3 cut(s)	241, 264, 728
BseLI	CCNNNNNNNGG	2 cut(s)	474, 1195
BseMII	CTCAG	1 cut(s)	1257
BseNI	ACTGG	1 cut(s)	992
BseSI	GKGCMC	1 cut(s)	1307
BseXI	GCAGC	2 cut(s)	238, 853
Bsh1285I	CGRYCG	1 cut(s)	786
BshFI	GGCC	6 cut(s)	27, 467, 897, 991, 1285, 1290
BshNI	GGYRCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	786
BsiSI	CCGG	2 cut(s)	995, 1190
BslI	CCNNNNNNNGG	2 cut(s)	474, 1195
BsmAI	GTCTC	3 cut(s)	293, 744, 1196
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	6 cut(s)	27, 467, 897, 991, 1285, 1290
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	1307
Bsp143I	GATC	5 cut(s)	30, 238, 286, 814, 1261
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	5 cut(s)	728, 992, 1031, 1079, 1211
BspANI	GGCC	6 cut(s)	27, 467, 897, 991, 1285, 1290
BspCNI	CTCAG	1 cut(s)	1258
BspHI	TCATGA	1 cut(s)	1162
BspLI	GGNNCC	4 cut(s)	276, 347, 607, 933
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	2 cut(s)	172, 450
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	2 cut(s)	281, 1256
BspQI	GCTCTTC	1 cut(s)	496
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	992
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	5 cut(s)	30, 238, 286, 814, 1261
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	828, 1287
Bst4CI	ACNGT	6 cut(s)	306, 354, 544, 784, 791, 1226
Bst6I	CTCTTC	2 cut(s)	335, 496
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	231, 454
BstDEI	CTNAG	2 cut(s)	155, 1266
BstDSI	CCRYGG	1 cut(s)	377
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	3 cut(s)	241, 264, 728
BstKTI	GATC	5 cut(s)	33, 241, 289, 817, 1264
BstMAI	GTCTC	3 cut(s)	293, 744, 1196
BstMBI	GATC	5 cut(s)	30, 238, 286, 814, 1261
BstMCI	CGRYCG	1 cut(s)	786
BstMWI	GCNNNNNNNGC	2 cut(s)	863, 997
BstNI	CCWGG	2 cut(s)	828, 1287
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	3 cut(s)	826, 1188, 1285
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	1307
BstV1I	GCAGC	2 cut(s)	238, 853
BstV2I	GAAGAC	2 cut(s)	348, 916
BstX2I	RGATCY	1 cut(s)	1261
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	1261
BsuI	GTATCC	2 cut(s)	584, 977
BsuRI	GGCC	6 cut(s)	27, 467, 897, 991, 1285, 1290
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	241, 264, 728
BveI	ACCTGC	2 cut(s)	172, 450
Cac8I	GCNNGC	2 cut(s)	231, 454
CciI	TCATGA	1 cut(s)	1162
Cfr13I	GGNCC	3 cut(s)	689, 931, 1283
Csp6I	GTAC	5 cut(s)	89, 439, 522, 745, 1071
CviAII	CATG	7 cut(s)	106, 361, 378, 503, 512, 848, 1163
CviQI	GTAC	5 cut(s)	89, 439, 522, 745, 1071
DdeI	CTNAG	2 cut(s)	155, 1266
DpnI	GATC	5 cut(s)	32, 240, 288, 816, 1263
DpnII	GATC	5 cut(s)	30, 238, 286, 814, 1261
EaeI	YGGCCR	2 cut(s)	989, 1288
Eam1104I	CTCTTC	2 cut(s)	335, 496
EarI	CTCTTC	2 cut(s)	335, 496
Eco130I	CCWWGG	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	689, 931
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoO109I	RGGNCCY	2 cut(s)	931, 1283
EcoRI	GAATTC	1 cut(s)	1158
EcoRII	CCWGG	2 cut(s)	826, 1285
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	7 cut(s)	109, 364, 381, 506, 515, 851, 1166
FatI	CATG	7 cut(s)	105, 360, 377, 502, 511, 847, 1162
FbaI	TGATCA	2 cut(s)	30, 238
FblI	GTMKAC	2 cut(s)	308, 786
Fnu4HI	GCNGC	3 cut(s)	227, 867, 992
FokI	GGATG	3 cut(s)	228, 251, 735
Fsp4HI	GCNGC	3 cut(s)	227, 867, 992
FspBI	CTAG	5 cut(s)	279, 453, 519, 525, 843
GluI	GCNGC	3 cut(s)	227, 867, 992
HaeIII	GGCC	6 cut(s)	27, 467, 897, 991, 1285, 1290
HapII	CCGG	2 cut(s)	995, 1190
Hin1II	CATG	7 cut(s)	109, 364, 381, 506, 515, 851, 1166
HincII	GTYRAC	3 cut(s)	103, 309, 787
HindII	GTYRAC	3 cut(s)	103, 309, 787
HinfI	GANTC	8 cut(s)	370, 426, 515, 631, 716, 733, 1133, 1152
HpaII	CCGG	2 cut(s)	995, 1190
HphI	GGTGA	5 cut(s)	206, 379, 574, 742, 1058
Hpy166II	GTNNAC	7 cut(s)	103, 309, 401, 547, 745, 787, 1021
Hpy188I	TCNGA	8 cut(s)	35, 183, 431, 449, 738, 983, 1157, 1249
Hpy188III	TCNNGA	5 cut(s)	268, 720, 1115, 1163, 1265
Hpy8I	GTNNAC	7 cut(s)	103, 309, 401, 547, 745, 787, 1021
Hpy99I	CGWCG	1 cut(s)	791
HpyAV	CCTTC	4 cut(s)	115, 468, 581, 908
HpyCH4III	ACNGT	6 cut(s)	306, 354, 544, 784, 791, 1226
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	5 cut(s)	167, 210, 869, 958, 1061
HpyF10VI	GCNNNNNNNGC	2 cut(s)	863, 997
HpyF3I	CTNAG	2 cut(s)	155, 1266
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	7 cut(s)	109, 364, 381, 506, 515, 851, 1166
Ksp22I	TGATCA	2 cut(s)	30, 238
Kzo9I	GATC	5 cut(s)	30, 238, 286, 814, 1261
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	3 cut(s)	450, 605, 997
Lsp1109I	GCAGC	2 cut(s)	238, 853
MaeI	CTAG	5 cut(s)	279, 453, 519, 525, 843
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	3 cut(s)	367, 527, 937
MalI	GATC	5 cut(s)	32, 240, 288, 816, 1263
MboI	GATC	5 cut(s)	30, 238, 286, 814, 1261
MboII	GAAGA	9 cut(s)	200, 348, 352, 394, 435, 483, 490, 916, 1271
MfeI	CAATTG	2 cut(s)	11, 946
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	1 cut(s)	1307
MlsI	TGGCCA	1 cut(s)	1290
MluNI	TGGCCA	1 cut(s)	1290
MlyI	GAGTC	3 cut(s)	364, 524, 625
MmeI	TCCRAC	2 cut(s)	314, 577
MnlI	CCTC	9 cut(s)	33, 91, 330, 336, 457, 510, 689, 1037, 1274
Mox20I	TGGCCA	1 cut(s)	1290
MscI	TGGCCA	1 cut(s)	1290
MseI	TTAA	5 cut(s)	146, 171, 252, 1146, 1309
MslI	CAYNNNNRTG	2 cut(s)	269, 365
Msp20I	TGGCCA	1 cut(s)	1290
MspA1I	CMGCKG	1 cut(s)	1175
MspI	CCGG	2 cut(s)	995, 1190
MspR9I	CCNGG	3 cut(s)	828, 1190, 1287
MunI	CAATTG	2 cut(s)	11, 946
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	828, 1287
MwoI	GCNNNNNNNGC	2 cut(s)	863, 997
NciI	CCSGG	1 cut(s)	1190
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	5 cut(s)	30, 238, 286, 814, 1261
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	7 cut(s)	109, 364, 381, 506, 515, 851, 1166
NlaIV	GGNNCC	4 cut(s)	276, 347, 607, 933
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	367, 527
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	324
PagI	TCATGA	1 cut(s)	1162
PceI	AGGCCT	1 cut(s)	467
PciI	ACATGT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	912
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	5 cut(s)	426, 716, 733, 1133, 1152
PflFI	GACNNNGTC	1 cut(s)	304
PfoI	TCCNGGA	2 cut(s)	826, 1188
PkrI	GCNGC	3 cut(s)	228, 868, 993
PleI	GAGTC	3 cut(s)	364, 523, 625
PpsI	GAGTC	3 cut(s)	364, 523, 625
PpuMI	RGGWCCY	1 cut(s)	931
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	931
Psp6I	CCWGG	2 cut(s)	826, 1285
PspGI	CCWGG	2 cut(s)	826, 1285
PspN4I	GGNNCC	4 cut(s)	276, 347, 607, 933
PspPI	GGNCC	3 cut(s)	689, 931, 1283
PspPPI	RGGWCCY	1 cut(s)	931
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	1261
PsyI	GACNNNGTC	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	5 cut(s)	90, 440, 523, 746, 1072
RsaNI	GTAC	5 cut(s)	89, 439, 522, 745, 1071
RseI	CAYNNNNRTG	2 cut(s)	269, 365
SalI	GTCGAC	2 cut(s)	307, 785
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	5 cut(s)	146, 171, 252, 1146, 1309
SatI	GCNGC	3 cut(s)	227, 867, 992
Sau3AI	GATC	5 cut(s)	30, 238, 286, 814, 1261
Sau96I	GGNCC	3 cut(s)	689, 931, 1283
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	3 cut(s)	364, 524, 625
ScrFI	CCNGG	3 cut(s)	828, 1190, 1287
SduI	GDGCHC	1 cut(s)	1307
SfcI	CTRYAG	1 cut(s)	165
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	2 cut(s)	689, 931
SmiMI	CAYNNNNRTG	2 cut(s)	269, 365
SpeI	ACTAGT	1 cut(s)	524
SseBI	AGGCCT	1 cut(s)	467
SsiI	CCGC	5 cut(s)	728, 992, 1031, 1079, 1211
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	5 cut(s)	279, 453, 519, 525, 843
StuI	AGGCCT	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	826, 1188, 1285
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	6 cut(s)	306, 354, 544, 784, 791, 1226
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	308, 324, 763, 786
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	1 cut(s)	994
TfiI	GAWTC	5 cut(s)	426, 716, 733, 1133, 1152
Tru1I	TTAA	5 cut(s)	146, 171, 252, 1146, 1309
Tru9I	TTAA	5 cut(s)	146, 171, 252, 1146, 1309
TseFI	GTSAC	2 cut(s)	367, 527
TseI	GCWGC	2 cut(s)	226, 866
Tsp45I	GTSAC	2 cut(s)	367, 527
TspDTI	ATGAA	1 cut(s)	1151
TspGWI	ACGGA	1 cut(s)	762
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	689, 931
XagI	CCTNNNNNAGG	1 cut(s)	472
XapI	RAATTY	3 cut(s)	320, 1158, 1184
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	308, 786
XspI	CTAG	5 cut(s)	279, 453, 519, 525, 843
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.