Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007116

Physical Location & Seq

Genomic Coordinates Reverse (-)

25943547 .. 25945129

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGCCTATTGACGATGAACCTTTTGAGGCATCCTCAAGTAAGAACCAAAAAGTAGAAGCCAATGATCTTTTGGAAGAGTGTTGGTTCTTTGACAACTTGCTCATCAGAAAGCAGAGGATGTTGAGGTGTTATTCTGATCCTTGTTGCCCTTCATCATCAAGCTTTGGTCAAGAAATGTTGGTGAAGAACTCAGAGGCCAAGAACTCCTTGTTTCGAACACCGTCTTTGCCACTTCAAGTAGGGAGAGGAGAGAAAGTTGAGCAAGCAGTGAAACAGAGTACTCCGAAGAAGAGTATGAGCAAATTGACTCGGCAGACATCACATCAGAAAGTGCTGCAGACACCAACCAAATCACCACCTTGTGTAAGCACGAAAGAAGAAGTTCAAGATAGAGAGGGGAGTGATAGTAGAAGAAGCAAATCAAATGGGCAATCGGTGCAGCGCAGTTTGCTAAGGACACCATCATTGCCACCGTGTTTAGGGAGGGAGGAGAAAAACCAAGACTGTGTTCCACCGCGACCTAAGGGCATGACACAATGTTCAAGCATTCCAAGATATCGACCTCCAGTCAGAAGCACAGAAGGGGAAAATGCAGATGTTAGCAAGGAAATGAGACGCAATTTACTTTCTAGAAAGAGCCTAAGCGACCTTGAAATTGAAGAAGTGCAAGGGTTCAAGGACTTGGGATTCACCTTTGACAAGAAAGACATAGCCCCAAGTGTGGTTAGCATACTTCCTGGTTTGCAAGAAAAGAAGCGCAATGAGGATTTAAACCCGGATATGGTACGTCGGCCTTATCTTTCGGAGGCATGGATGGTGCAAAGCTGTGCTCCTCCACCTCCAAATTTGGGTGTAAGTATGTCTGCTGAAGACATGAAGGCACAAATCAAGTTCTGGGCTAGAGCTGTGGCATCTAATGTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

309

Amino Acids

34.84

Weight (kDa)

8.99

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53180 AT1G53180 AT1G53180 AT3G15115
fragaria_vesca	FvH4_3g19190
malus_domestica	MD03G1235500.v1.1 MD11G1256500.v1.1
prunus_persica	Prupe.4G173500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032271
rosa_laevigata	RLG00000033376
rosa_multiflora	Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048190
rosa_rugosa	Rorug05G0130200
rosa_samantha	Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400
rosa_wichuraiana	Rw5G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	520
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	1 cut(s)	891
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	283, 789
AfiI	CCNNNNNNNGG	4 cut(s)	482, 724, 784, 851
AgsI	TTSAA	6 cut(s)	239, 389, 546, 656, 662, 679
AhdI	GACNNNNNGTC	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	739
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AluBI	AGCT	3 cut(s)	165, 828, 908
AluI	AGCT	3 cut(s)	165, 828, 908
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	2 cut(s)	198, 794
ApeKI	GCWGC	2 cut(s)	337, 442
ApoI	RAATTY	1 cut(s)	847
Asp700I	GAANNNNTTC	1 cut(s)	384
AspLEI	GCGC	3 cut(s)	447, 762, 927
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	3 cut(s)	196, 348, 685
AsuII	TTCGAA	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	2 cut(s)	324, 454
BccI	CCATC	2 cut(s)	472, 811
BciT130I	CCWGG	1 cut(s)	741
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	3 cut(s)	633, 903, 928
BfmI	CTRYAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	338, 443
BlsI	GCNGC	2 cut(s)	339, 444
BmcAI	AGTACT	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	741, 779
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	741, 779
BmsI	GCATC	2 cut(s)	41, 923
BpiI	GAAGAC	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	2 cut(s)	455, 644
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	779
BsaXI	ACNNNNNCTCC	4 cut(s)	243, 273, 394, 424
Bsc4I	CCNNNNNNNGG	4 cut(s)	482, 724, 784, 851
Bse1I	ACTGG	1 cut(s)	569
Bse21I	CCTNAGG	1 cut(s)	525
Bse3DI	GCAATG	2 cut(s)	467, 769
BseBI	CCWGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	32, 126, 822
BseLI	CCNNNNNNNGG	4 cut(s)	482, 724, 784, 851
BseMI	GCAATG	2 cut(s)	467, 769
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	3 cut(s)	264, 506, 825
BseXI	GCAGC	2 cut(s)	324, 454
BsgI	GTGCAG	1 cut(s)	461
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	2 cut(s)	200, 796
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	779
BslI	CCNNNNNNNGG	4 cut(s)	482, 724, 784, 851
BsmAI	GTCTC	1 cut(s)	610
BsmBI	CGTCTC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	200, 796
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	2 cut(s)	67, 139
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	200, 796
BspCNI	CTCAG	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	217
BsrDI	GCAATG	2 cut(s)	467, 769
BsrI	ACTGG	1 cut(s)	569
BssMI	GATC	2 cut(s)	67, 139
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	225, 477, 509
Bst6I	CTCTTC	2 cut(s)	72, 287
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	4 cut(s)	193, 455, 525, 644
BstF5I	GGATG	3 cut(s)	32, 126, 822
BstFNI	CGCG	1 cut(s)	520
BstHHI	GCGC	3 cut(s)	447, 762, 927
BstKTI	GATC	2 cut(s)	70, 142
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	2 cut(s)	67, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 451
BstNI	CCWGG	1 cut(s)	741
BstSCI	CCNGG	2 cut(s)	739, 777
BstSFI	CTRYAG	1 cut(s)	338
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	2 cut(s)	324, 454
BstV2I	GAAGAC	1 cut(s)	879
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	2 cut(s)	200, 796
BtsCI	GGATG	3 cut(s)	32, 126, 822
BtsI	GCAGTG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	3 cut(s)	447, 762, 927
CseI	GACGC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	282, 788
CviAII	CATG	3 cut(s)	532, 813, 877
CviQI	GTAC	2 cut(s)	282, 788
DdeI	CTNAG	4 cut(s)	193, 455, 525, 644
DpnI	GATC	2 cut(s)	69, 141
DpnII	GATC	2 cut(s)	67, 139
DraI	TTTAAA	1 cut(s)	774
DraIII	CACNNNGTG	1 cut(s)	365
DriI	GACNNNNNGTC	1 cut(s)	569
Eam1104I	CTCTTC	2 cut(s)	72, 287
Eam1105I	GACNNNNNGTC	1 cut(s)	569
EarI	CTCTTC	2 cut(s)	72, 287
Eco32I	GATATC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	891
Eco81I	CCTNAGG	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	739
EcoRV	GATATC	1 cut(s)	560
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	3 cut(s)	535, 816, 880
FaiI	YATR	8 cut(s)	299, 533, 713, 734, 785, 814, 863, 878
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	3 cut(s)	531, 812, 876
Fnu4HI	GCNGC	2 cut(s)	338, 443
FokI	GGATG	3 cut(s)	19, 133, 829
Fsp4HI	GCNGC	2 cut(s)	338, 443
FspBI	CTAG	3 cut(s)	633, 903, 928
GlaI	GCGC	3 cut(s)	446, 761, 926
GluI	GCNGC	2 cut(s)	338, 443
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	200, 796
HapII	CCGG	1 cut(s)	779
HgaI	GACGC	1 cut(s)	627
HhaI	GCGC	3 cut(s)	447, 762, 927
Hin1II	CATG	3 cut(s)	535, 816, 880
Hin6I	GCGC	3 cut(s)	445, 760, 925
HinP1I	GCGC	3 cut(s)	445, 760, 925
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	2 cut(s)	310, 690
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	3 cut(s)	196, 348, 685
Hpy188I	TCNGA	7 cut(s)	110, 139, 196, 288, 330, 575, 808
Hpy188III	TCNNGA	3 cut(s)	173, 389, 633
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	3 cut(s)	162, 578, 874
HpyCH4III	ACNGT	3 cut(s)	225, 477, 509
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	6 cut(s)	340, 442, 596, 670, 748, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 451
HpyF3I	CTNAG	4 cut(s)	193, 455, 525, 644
HpySE526I	ACGT	1 cut(s)	790
Hsp92II	CATG	3 cut(s)	535, 816, 880
HspAI	GCGC	3 cut(s)	445, 760, 925
Kzo9I	GATC	2 cut(s)	67, 139
LmnI	GCTCC	2 cut(s)	4, 838
LpnPI	CCDG	5 cut(s)	582, 726, 753, 792, 883
Lsp1109I	GCAGC	2 cut(s)	324, 454
LweI	GCATC	2 cut(s)	41, 923
MaeI	CTAG	3 cut(s)	633, 903, 928
MaeII	ACGT	1 cut(s)	790
MalI	GATC	2 cut(s)	69, 141
MboI	GATC	2 cut(s)	67, 139
MboII	GAAGA	8 cut(s)	89, 199, 301, 304, 392, 426, 674, 884
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	4 cut(s)	305, 622, 657, 847
MlyI	GAGTC	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	384
MseI	TTAA	1 cut(s)	773
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	741, 779
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	2 cut(s)	439, 451
NciI	CCSGG	1 cut(s)	779
NdeII	GATC	2 cut(s)	67, 139
NlaIII	CATG	3 cut(s)	535, 816, 880
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	217
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	690
PkrI	GCNGC	2 cut(s)	339, 444
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	739
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	283, 789
RsaNI	GTAC	2 cut(s)	282, 788
SaqAI	TTAA	1 cut(s)	773
SatI	GCNGC	2 cut(s)	338, 443
Sau3AI	GATC	2 cut(s)	67, 139
ScaI	AGTACT	1 cut(s)	283
SchI	GAGTC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	741, 779
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	41, 923
SfcI	CTRYAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	4 cut(s)	305, 622, 657, 847
SsiI	CCGC	1 cut(s)	518
SspMI	CTAG	3 cut(s)	633, 903, 928
StyD4I	CCNGG	2 cut(s)	739, 777
TaaI	ACNGT	3 cut(s)	225, 477, 509
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	2 cut(s)	217, 562
TasI	AATT	4 cut(s)	305, 622, 657, 847
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	690
Tru1I	TTAA	1 cut(s)	773
Tru9I	TTAA	1 cut(s)	773
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	2 cut(s)	337, 442
TspDTI	ATGAA	3 cut(s)	33, 144, 893
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	847
XbaI	TCTAGA	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	3 cut(s)	633, 903, 928
ZrmI	AGTACT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.