Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009471

Physical Location & Seq

Genomic Coordinates Forward (+)

60226996 .. 60230518

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCACTATCACGGAATGCTATTGTTGCTACTGGCCTGGTAGTTTTCGCATCTGCGGGGTTGGCATTTCCCTTTTACATGGCGTCATCAAAAACGCCTGTTATCGATCCAACAAAGCCACTGTCACCTCAGGCAACTTTTCGAGGGCCTTACATAAACACTGGTTCGCGTGACGTTGGACCTGATCATCAGACCTACCCAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.35

Weight (kDa)

9.87

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22875 AT5G22875 AT5G22875
fragaria_vesca	FvH4_3g30550 FvH4_3g30550 FvH4_3g30550 FvH4_3g30550
malus_domestica	MD03G1128500.v1.1 MD11G1149300.v1.1
prunus_persica	Prupe.6G113700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0056551
rosa_laevigata	RLG00000035104
rosa_multiflora	Rmu_co8378101.1_g000001 Rmu_sc0000366.1_g000045 Rmu_sc0006045.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023790
rosa_rugosa	Rorug05G0300700.1
rosa_samantha	Rh5AG371100 Rh5BG382200 Rh5CG405400 Rh5DG395200
rosa_wichuraiana	Rw5G034760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	36
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	2 cut(s)	34, 146
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	2 cut(s)	146, 179
AsuHPI	GGTGA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	179
AxyI	CCTNAGG	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	146, 179
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	37, 166
Bse21I	CCTNAGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	2 cut(s)	37, 166
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	36, 148
BshVI	ATCGAT	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	36, 148
Bsp143I	GATC	2 cut(s)	106, 184
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	36, 148
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	37, 166
BssMI	GATC	2 cut(s)	106, 184
BssNI	GRCGYC	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	83
BstDEI	CTNAG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	109, 187
BstMBI	GATC	2 cut(s)	106, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 62
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	36, 148
BsuTUI	ATCGAT	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	119, 159
Cfr13I	GGNCC	2 cut(s)	146, 179
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	72
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	3 cut(s)	36, 118, 148
CviKI_1	RGCY	3 cut(s)	36, 118, 148
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	108, 186
DpnII	GATC	2 cut(s)	106, 184
Eco47I	GGWCC	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	129
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	80, 155
FatI	CATG	1 cut(s)	78
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	184
HaeIII	GGCC	2 cut(s)	36, 148
HgaI	GACGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	117
Hpy188I	TCNGA	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 62
HpyF3I	CTNAG	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	106, 184
LpnPI	CCDG	7 cut(s)	18, 23, 50, 111, 116, 147, 195
LweI	GCATC	1 cut(s)	59
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	123, 170
MalI	GATC	2 cut(s)	108, 186
MboI	GATC	2 cut(s)	106, 184
MmeI	TCCRAC	2 cut(s)	134, 157
MnlI	CCTC	2 cut(s)	137, 138
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	26, 62
NdeII	GATC	2 cut(s)	106, 184
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	123, 170
PctI	GAATGC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspPI	GGNCC	2 cut(s)	146, 179
Sau3AI	GATC	2 cut(s)	106, 184
Sau96I	GGNCC	2 cut(s)	146, 179
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	4 cut(s)	130, 177, 184, 197
SfaNI	GCATC	1 cut(s)	59
SinI	GGWCC	1 cut(s)	179
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	105, 142
TscAI	CASTG	2 cut(s)	126, 166
TseFI	GTSAC	2 cut(s)	123, 170
Tsp45I	GTSAC	2 cut(s)	123, 170
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	126, 166
VpaK11BI	GGWCC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.