RchiOBHm_Chr4g0385881

Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
1497741 .. 1507030
9290 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1491 bp
ATGGCGAGGAAGATGCTAGTTGATGGTGAGCTGAGCAAACCAAATGAAGAGGAGGCCCACTATGACTTCGACTTGTTTGTTATTGGGGCTGGAAGCGGTGGTGTTCGTGCCTCCAGATTTGCAGCTAATTTCGGAGCTAAGGTTGCCATATGTGAGCTTCCATTTCATCCCATCAGTTCTGAAGTGATTGGAGGAGTTGGTGGAACATGTGTCATTCGTGGTTGTGTTCCCAAAAAGATTTTGGTGTATGGAGCATCTTTTGGAGGTGAAATTCAGGATGCCAAGAATTATGGGTGGGAAGTGAGTGACAAAGTTGATTTCAACTGGAAGAAACTTTTGCAGAAAAAGACGGATGAAATAGTTCGATTAAATGGCATATACAAGCGTTTATTGTCGAATGCTGGGGTTAAATTGTTTGAAGGAGAGGGTAAGCTGGTTGGTCCCAATGAAGTTGAGGTGACCCAGCTAGATGGCACTAAATTGAGCTATTCAGCAAAGCACATATTGATTGCAACTGGCAGTAGGGCTCATCGACCTGGTATTCCTGGTGAGGAATTGGGTATAACATCTGACGAAGCATTGAGTTTGGAGGAGTTGCCTAAACGCGCCGTGGTGCTAGGGGGAGGATATATAGCGGTCGAGTTTGCCTCAATATGGCGTGGGATGGGCGCTTCTGTGGATCTTTTCTTCAGAAAGGAACTTCCATTGAGAGGTTTTGATGATGAAATGAGGGCAGTTGTTGCAAGGAATCTGGAAGGTAGGGGAATTAATTTACACCCACAAACAAATCTGACAGAGTTGATAAAAACAGATGATGGCATAAAAGTTATCACAGATCATGGTGAAGAGCTGATAGCGGATGTTGTGCTGTTCGCCACTGGTCGGGCTCCCAATACAAAGAGGTTGAATTTGGAAGCCGTGGGTGTGGAACTTGATCAAACAGGAGCTGTAAAGGTGGACGAGTATTCATGTACCAATGTTCCTAGTATATGGGCTGTTGGTGATGTTACAAACCGGGCTAACCTTACCCCTGTTGCTCTAATGGAGGGAACATGCTTTGCAAAAACAGTTTTTGGTGGGCAACCTAGCAAACCGGATTACAGAGATATACCTTGTGCAGTTTTTAGCATACCACCTCTATCTGTGGTGGGACTTAATGAAGAACAGGCAGTAGAACAAGCCAACGGTGATTTATTAGTTTTCACATCAACCTTCAATCCAATGAAGAACACTGTATCCGGACGGCAAGAAAAGTCGGTTATGAAGCTTGTTGTTGATGCTGAGACGGATAAGGTTCTAGGAGCATCCATGTGTGGGCCAGATTCACCTGAGATTATGCAGGGCATTGCTATTGCACTGAAATGTGGAGCAACCAAGGCACAATTTGACAGTACAGTAGGAATACACCCTTCTGCTGCAGAGGAATTTGTGACCATGCGTTCAGTGACAAGGCGTGTTTCTGCGCGTGGCAAACCAAAGACAAATCTGTAA

Protein Analysis

496

Amino Acids

53.37

Weight (kDa)

5.71

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 23 - 350 5.1e-70 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 155 - 334 6.7e-13 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 202 - 276 1.5e-18 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_dim PF02852 370 - 479 5.3e-30 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 606, 1465
AccIII TCCGGA 1 cut(s) 1238
AciI CCGC 3 cut(s) 96, 635, 857
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 3 cut(s) 270, 907, 1424
AcuI CTGAAG 2 cut(s) 201, 673
AfaI GTAC 2 cut(s) 973, 1393
AfiI CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1314
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 4 cut(s) 322, 419, 907, 1216
AjnI CCWGG 2 cut(s) 535, 544
AloI GAACNNNNNNTCC 2 cut(s) 1220, 1252
Alw26I GTCTC 1 cut(s) 1277
AlwI GGATC 1 cut(s) 687
AlwNI CAGNNNCTG 1 cut(s) 947
Aor13HI TCCGGA 1 cut(s) 1238
AoxI GGCC 2 cut(s) 54, 1316
ApeKI GCWGC 2 cut(s) 122, 1415
ApoI RAATTY 3 cut(s) 270, 907, 1424
AseI ATTAAT 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 360
AspLEI GCGC 3 cut(s) 608, 671, 1465
AspS9I GGNCC 3 cut(s) 55, 440, 1316
AsuC2I CCSGG 1 cut(s) 1016
AsuHPI GGTGA 8 cut(s) 38, 278, 469, 560, 854, 1013, 1199, 1317
AvaII GGWCC 1 cut(s) 440
BanII GRGCYC 2 cut(s) 529, 889
BbvI GCAGC 2 cut(s) 134, 1402
BccI CCATC 5 cut(s) 17, 179, 464, 658, 809
BceAI ACGGC 3 cut(s) 593, 902, 1259
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 537, 546
BciVI GTATCC 1 cut(s) 1246
BclI TGATCA 1 cut(s) 934
BcnI CCSGG 1 cut(s) 1016
BcoDI GTCTC 1 cut(s) 1277
BfaI CTAG 6 cut(s) 17, 467, 617, 984, 1086, 1298
BfmI CTRYAG 1 cut(s) 1416
BfoI RGCGCY 1 cut(s) 672
BfuI GTATCC 1 cut(s) 1246
BisI GCNGC 2 cut(s) 123, 1416
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 2 cut(s) 124, 1417
Bme1390I CCNGG 3 cut(s) 537, 546, 1016
Bme18I GGWCC 1 cut(s) 440
BmgT120I GGNCC 3 cut(s) 55, 440, 1316
BmiI GGNNCC 2 cut(s) 442, 888
BmrFI CCNGG 3 cut(s) 537, 546, 1016
BmsI GCATC 5 cut(s) 3, 263, 268, 1267, 1313
BplI GAGNNNNNCTC 2 cut(s) 632, 664
BpmI CTGGAG 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 1016
BsaJI CCNNGG 3 cut(s) 609, 918, 1374
BsaWI WCCGGW 2 cut(s) 1093, 1238
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bsc4I CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1314
Bse1I ACTGG 3 cut(s) 329, 520, 883
Bse3DI GCAATG 1 cut(s) 1344
BseAI TCCGGA 1 cut(s) 1238
BseBI CCWGG 2 cut(s) 537, 546
BseDI CCNNGG 3 cut(s) 609, 918, 1374
BseGI GGATG 6 cut(s) 166, 283, 358, 669, 865, 1304
BseLI CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1314
BseMI GCAATG 1 cut(s) 1344
BseMII CTCAG 3 cut(s) 23, 1272, 1320
BseNI ACTGG 3 cut(s) 329, 520, 883
BseRI GAGGAG 3 cut(s) 65, 207, 605
BseXI GCAGC 2 cut(s) 134, 1402
BseYI CCCAGC 2 cut(s) 401, 462
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 2 cut(s) 606, 1465
Bsh1285I CGRYCG 1 cut(s) 639
BshFI GGCC 2 cut(s) 56, 1318
BsiEI CGRYCG 1 cut(s) 639
BsiSI CCGG 3 cut(s) 1015, 1094, 1239
BslFI GGGAC 2 cut(s) 426, 1164
BslI CCNNNNNNNGG 4 cut(s) 654, 710, 882, 1314
BsmAI GTCTC 1 cut(s) 1277
BsmBI CGTCTC 1 cut(s) 1277
BsmFI GGGAC 2 cut(s) 426, 1164
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 2 cut(s) 56, 1318
Bsp1286I GDGCHC 2 cut(s) 529, 889
Bsp13I TCCGGA 1 cut(s) 1238
Bsp143I GATC 3 cut(s) 679, 835, 934
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 3 cut(s) 96, 635, 857
BspANI GGCC 2 cut(s) 56, 1318
BspCNI CTCAG 3 cut(s) 24, 1273, 1321
BspEI TCCGGA 1 cut(s) 1238
BspFNI CGCG 2 cut(s) 606, 1465
BspLI GGNNCC 2 cut(s) 442, 888
BspMAI CTGCAG 1 cut(s) 1420
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 1 cut(s) 840
BsrDI GCAATG 1 cut(s) 1344
BsrI ACTGG 3 cut(s) 329, 520, 883
BssECI CCNNGG 3 cut(s) 609, 918, 1374
BssMI GATC 3 cut(s) 679, 835, 934
BssT1I CCWWGG 1 cut(s) 1374
Bst2UI CCWGG 2 cut(s) 537, 546
Bst4CI ACNGT 5 cut(s) 1069, 1187, 1234, 1391, 1396
Bst6I CTCTTC 2 cut(s) 42, 840
BstAPI GCANNNNNTGC 1 cut(s) 740
BstDEI CTNAG 4 cut(s) 32, 138, 1281, 1329
BstDSI CCRYGG 2 cut(s) 609, 918
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 6 cut(s) 166, 283, 358, 669, 865, 1304
BstFNI CGCG 2 cut(s) 606, 1465
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 3 cut(s) 608, 671, 1465
BstKTI GATC 3 cut(s) 682, 838, 937
BstMAI GTCTC 1 cut(s) 1277
BstMBI GATC 3 cut(s) 679, 835, 934
BstMCI CGRYCG 1 cut(s) 639
BstMWI GCNNNNNNNGC 3 cut(s) 143, 740, 1376
BstNI CCWGG 2 cut(s) 537, 546
BstNSI RCATGY 2 cut(s) 210, 1056
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 3 cut(s) 535, 544, 1014
BstSFI CTRYAG 1 cut(s) 1416
BstUI CGCG 2 cut(s) 606, 1465
BstV1I GCAGC 2 cut(s) 134, 1402
BstX2I RGATCY 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 679
BsuI GTATCC 1 cut(s) 1246
BsuRI GGCC 2 cut(s) 56, 1318
BtgI CCRYGG 2 cut(s) 609, 918
BtsCI GGATG 6 cut(s) 166, 283, 358, 669, 865, 1304
BtsIMutI CAGTG 4 cut(s) 876, 1230, 1355, 1449
CaiI CAGNNNCTG 1 cut(s) 947
CfoI GCGC 3 cut(s) 608, 671, 1465
Cfr13I GGNCC 3 cut(s) 55, 440, 1316
CsiI ACCWGGT 1 cut(s) 535
Csp6I GTAC 2 cut(s) 972, 1392
CviAII CATG 6 cut(s) 207, 839, 969, 1053, 1309, 1435
CviQI GTAC 2 cut(s) 972, 1392
DdeI CTNAG 4 cut(s) 32, 138, 1281, 1329
DpnI GATC 3 cut(s) 681, 837, 936
DpnII GATC 3 cut(s) 679, 835, 934
Eam1104I CTCTTC 2 cut(s) 42, 840
EarI CTCTTC 2 cut(s) 42, 840
Eco130I CCWWGG 1 cut(s) 1374
Eco24I GRGCYC 2 cut(s) 529, 889
Eco47I GGWCC 1 cut(s) 440
Eco57I CTGAAG 2 cut(s) 201, 673
Eco91I GGTNACC 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 535, 544
EcoT14I CCWWGG 1 cut(s) 1374
EcoT38I GRGCYC 2 cut(s) 529, 889
ErhI CCWWGG 1 cut(s) 1374
Esp3I CGTCTC 1 cut(s) 1277
FaeI CATG 6 cut(s) 210, 842, 972, 1056, 1312, 1438
FaqI GGGAC 2 cut(s) 426, 1164
FatI CATG 6 cut(s) 206, 838, 968, 1052, 1308, 1434
FauNDI CATATG 1 cut(s) 149
FbaI TGATCA 1 cut(s) 934
Fnu4HI GCNGC 2 cut(s) 123, 1416
FokI GGATG 6 cut(s) 153, 290, 365, 676, 872, 1291
FriOI GRGCYC 2 cut(s) 529, 889
Fsp4HI GCNGC 2 cut(s) 123, 1416
FspBI CTAG 6 cut(s) 17, 467, 617, 984, 1086, 1298
GlaI GCGC 3 cut(s) 607, 670, 1464
GluI GCNGC 2 cut(s) 123, 1416
GsaI CCCAGC 2 cut(s) 405, 466
GsuI CTGGAG 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 2 cut(s) 56, 1318
HapII CCGG 3 cut(s) 1015, 1094, 1239
HhaI GCGC 3 cut(s) 608, 671, 1465
Hin1II CATG 6 cut(s) 210, 842, 972, 1056, 1312, 1438
Hin6I GCGC 3 cut(s) 606, 669, 1463
HinP1I GCGC 3 cut(s) 606, 669, 1463
HindIII AAGCTT 1 cut(s) 1265
HinfI GANTC 2 cut(s) 748, 1322
HpaII CCGG 3 cut(s) 1015, 1094, 1239
HphI GGTGA 8 cut(s) 38, 278, 469, 560, 854, 1013, 1199, 1317
Hpy166II GTNNAC 1 cut(s) 958
Hpy188I TCNGA 5 cut(s) 134, 181, 571, 692, 792
Hpy188III TCNNGA 4 cut(s) 114, 275, 752, 1239
Hpy8I GTNNAC 1 cut(s) 958
HpyAV CCTTC 4 cut(s) 413, 749, 1222, 1419
HpyCH4III ACNGT 5 cut(s) 1069, 1187, 1234, 1391, 1396
HpyCH4V TGCA 9 cut(s) 122, 340, 512, 743, 1061, 1118, 1339, 1355, 1418
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 740, 1376
HpyF3I CTNAG 4 cut(s) 32, 138, 1281, 1329
Hsp92II CATG 6 cut(s) 210, 842, 972, 1056, 1312, 1438
HspAI GCGC 3 cut(s) 606, 669, 1463
Kpn2I TCCGGA 1 cut(s) 1238
Ksp22I TGATCA 1 cut(s) 934
Kzo9I GATC 3 cut(s) 679, 835, 934
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 6 cut(s) 134, 251, 892, 944, 1301, 1367
Lsp1109I GCAGC 2 cut(s) 134, 1402
LweI GCATC 5 cut(s) 3, 263, 268, 1267, 1313
MabI ACCWGGT 1 cut(s) 535
MaeI CTAG 6 cut(s) 17, 467, 617, 984, 1086, 1298
MaeIII GTNAC 5 cut(s) 305, 457, 1006, 1429, 1444
MalI GATC 3 cut(s) 681, 837, 936
MboI GATC 3 cut(s) 679, 835, 934
MboII GAAGA 7 cut(s) 22, 59, 340, 679, 857, 1172, 1237
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 2 cut(s) 529, 889
MroI TCCGGA 1 cut(s) 1238
MroXI GAANNNNTTC 1 cut(s) 360
MseI TTAA 4 cut(s) 368, 408, 768, 1155
MslI CAYNNNNRTG 2 cut(s) 1309, 1360
MspI CCGG 3 cut(s) 1015, 1094, 1239
MspR9I CCNGG 3 cut(s) 537, 546, 1016
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 2 cut(s) 537, 546
MvnI CGCG 2 cut(s) 606, 1465
MwoI GCNNNNNNNGC 3 cut(s) 143, 740, 1376
NciI CCSGG 1 cut(s) 1016
NdeI CATATG 1 cut(s) 149
NdeII GATC 3 cut(s) 679, 835, 934
NlaIII CATG 6 cut(s) 210, 842, 972, 1056, 1312, 1438
NlaIV GGNNCC 2 cut(s) 442, 888
NmuCI GTSAC 4 cut(s) 305, 457, 1429, 1444
NspI RCATGY 2 cut(s) 210, 1056
PciI ACATGT 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 840
PctI GAATGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 360
PfeI GAWTC 2 cut(s) 748, 1322
PkrI GCNGC 2 cut(s) 124, 1417
PscI ACATGT 1 cut(s) 206
PshBI ATTAAT 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 535, 544
PspEI GGTNACC 1 cut(s) 457
PspFI CCCAGC 2 cut(s) 401, 462
PspGI CCWGG 2 cut(s) 535, 544
PspN4I GGNNCC 2 cut(s) 442, 888
PspPI GGNCC 3 cut(s) 55, 440, 1316
PstI CTGCAG 1 cut(s) 1420
PstNI CAGNNNCTG 1 cut(s) 947
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 2 cut(s) 973, 1393
RsaNI GTAC 2 cut(s) 972, 1392
RseI CAYNNNNRTG 2 cut(s) 1309, 1360
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 4 cut(s) 368, 408, 768, 1155
SatI GCNGC 2 cut(s) 123, 1416
Sau3AI GATC 3 cut(s) 679, 835, 934
Sau96I GGNCC 3 cut(s) 55, 440, 1316
ScrFI CCNGG 3 cut(s) 537, 546, 1016
SduI GDGCHC 2 cut(s) 529, 889
SexAI ACCWGGT 1 cut(s) 535
SfaNI GCATC 5 cut(s) 3, 263, 268, 1267, 1313
SfcI CTRYAG 1 cut(s) 1416
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 2 cut(s) 1309, 1360
SsiI CCGC 3 cut(s) 96, 635, 857
SspMI CTAG 6 cut(s) 17, 467, 617, 984, 1086, 1298
StyD4I CCNGG 3 cut(s) 535, 544, 1014
StyI CCWWGG 1 cut(s) 1374
TaaI ACNGT 5 cut(s) 1069, 1187, 1234, 1391, 1396
TaqI TCGA 5 cut(s) 69, 364, 395, 532, 639
TatI WGTACW 1 cut(s) 1391
TfiI GAWTC 2 cut(s) 748, 1322
Tru1I TTAA 4 cut(s) 368, 408, 768, 1155
Tru9I TTAA 4 cut(s) 368, 408, 768, 1155
TscAI CASTG 4 cut(s) 883, 1237, 1362, 1449
TseFI GTSAC 4 cut(s) 305, 457, 1429, 1444
TseI GCWGC 2 cut(s) 122, 1415
Tsp45I GTSAC 4 cut(s) 305, 457, 1429, 1444
TspDTI ATGAA 9 cut(s) 60, 155, 369, 462, 738, 957, 1173, 1238, 1277
TspGWI ACGGA 2 cut(s) 365, 1301
TspRI CASTG 4 cut(s) 883, 1237, 1362, 1449
VpaK11BI GGWCC 1 cut(s) 440
VspI ATTAAT 1 cut(s) 768
XapI RAATTY 3 cut(s) 270, 907, 1424
XceI RCATGY 2 cut(s) 210, 1056
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 360
XspI CTAG 6 cut(s) 17, 467, 617, 984, 1086, 1298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.