RchiOBHm_Chr4g0385901

Putative peptidoglycan binding domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
1526900 .. 1530868
3969 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1098 bp
ATGTCTTCTTCGTCTCTCACTCTCTTTCTTCACCCTCATCCTCCTCGTCTGAACCACCTCAAACCCCACCTCTACTCCCTCTCCCCTCTCACCTCATCCCTCTCCTTCAAACCCCACATTTGCTTCTCTTCAAACTCCAACTCCAACCACGACGCCACCTCCGAAGAGTCCCGCTGGCTCCGCGAAGAGCAGCGCTGGCTGCGAGAGGAACAGCGCTGGCTCCGCGAAGAGCAACGCTGGGCGCGTGACCGCGACTCTCTCCTCCGCGAAATCGCCGACCTTAAGCTCAAACTCCAGGCCTTGGAGCTCCAGAACCCTCTCCAGGCAGGGGCCTCGTCGGAGACTATTGCCAACATTGCCGGATTGCTGCAGTCGTTGAAGGAGAAGAACCAGATTGCCGAGACGGGGTCGAGTTCCAGAGCGCTGGAGTTGGAAGATCATAATCAGGTGAAGGAGGTGTTCGCTGTTTCGGAAGTGAGGAAGGAGAAGAAGACAAAGGAGGTTCTGAGAAAGGGTTCCGAAGGAGAACATGTTCGAGCAATGCAGGAAGCGTTGCTAAAATCAGGATTTTACTCGGGTGAAGAAGACATGGAATTTTCCAACTTCTCAAGCGGGACAGAACGGGCTGTCAAGACTTGGCAAGCCTCCATAGGTTTGCCTGAAGATGGAATAATGACCGAAGAACTTCTTGAAAGATTATTTGACCCACAAACTGAGGGTGCTGTTGAAACAAAGGAAGATGCAAATGGAGCTGCAGGTACGTCTGTAACAGAAATTTCAGAGGTGAAGCAAATAGTATTGAAAGAAGATGCTGCAGAGGTAGATGAATCTCACCATAGAGTTTTTCTTCTAGGAGAAAACCGCTGGGAAGAACCTTCAAGACTAAACAAGAAAAAAGGGAGTGAAACCAATACAACAGGTACCACAACAACATGCCTTACTTGCCGTGGGGAAGGTCGCTTATTGTGCACAGAATGTGATGGAACTGGTGAACCTAACGTCGAGGAACAGTTCTTGGAATGGATCGATGAAGGAGCAAAGTGTCCATATTGTGAAGGTCTTGGGTTTACAGCTTGCGATGTATGTGGAGGGAAATAG

Protein Analysis

365

Amino Acids

40.93

Weight (kDa)

5.06

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PG_binding_1 PF01471 175 - 233 4.6e-12 Putative peptidoglycan binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 746
Acc65I GGTACC 1 cut(s) 920
AccB1I GGYRCC 1 cut(s) 920
AccB7I CCANNNNNTGG 1 cut(s) 301
AccII CGCG 5 cut(s) 183, 225, 244, 252, 267
AciI CCGC 7 cut(s) 172, 181, 223, 250, 265, 612, 862
AclWI GGATC 1 cut(s) 1031
AcsI RAATTY 2 cut(s) 593, 774
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 760, 922
AfeI AGCGCT 3 cut(s) 194, 215, 423
AfiI CCNNNNNNNGG 5 cut(s) 301, 322, 328, 405, 665
AflII CTTAAG 1 cut(s) 281
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 7 cut(s) 109, 132, 379, 692, 728, 802, 879
AjnI CCWGG 2 cut(s) 294, 321
AloI GAACNNNNNNTCC 2 cut(s) 516, 548
AluBI AGCT 4 cut(s) 286, 307, 752, 1073
AluI AGCT 4 cut(s) 286, 307, 752, 1073
Alw21I GWGCWC 2 cut(s) 309, 971
Alw26I GTCTC 3 cut(s) 18, 335, 395
Alw44I GTGCAC 1 cut(s) 967
AlwI GGATC 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 574
Aor51HI AGCGCT 3 cut(s) 194, 215, 423
AoxI GGCC 2 cut(s) 297, 330
ApaLI GTGCAC 1 cut(s) 967
ApeKI GCWGC 5 cut(s) 190, 199, 367, 752, 812
ApoI RAATTY 2 cut(s) 593, 774
Asp700I GAANNNNTTC 3 cut(s) 514, 531, 684
Asp718I GGTACC 1 cut(s) 920
AspLEI GCGC 4 cut(s) 195, 216, 244, 424
AspS9I GGNCC 1 cut(s) 330
AsuHPI GGTGA 7 cut(s) 23, 82, 460, 590, 796, 824, 1001
AvaI CYCGRG 1 cut(s) 574
BaeGI GKGCMC 1 cut(s) 971
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 309
BbsI GAAGAC 2 cut(s) 497, 591
Bbv12I GWGCWC 2 cut(s) 309, 971
BbvI GCAGC 5 cut(s) 186, 202, 354, 739, 799
BccI CCATC 2 cut(s) 659, 974
BceAI ACGGC 1 cut(s) 930
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 2 cut(s) 296, 323
BcoDI GTCTC 3 cut(s) 18, 335, 395
BfaI CTAG 1 cut(s) 851
BfmI CTRYAG 3 cut(s) 368, 753, 813
BfoI RGCGCY 3 cut(s) 196, 217, 425
BfrI CTTAAG 1 cut(s) 281
BfuAI ACCTGC 1 cut(s) 746
BisI GCNGC 5 cut(s) 191, 200, 368, 753, 813
BlsI GCNGC 5 cut(s) 192, 201, 369, 754, 814
Bme1390I CCNGG 2 cut(s) 296, 323
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 330
BmiI GGNNCC 5 cut(s) 179, 221, 331, 517, 922
BmrFI CCNGG 2 cut(s) 296, 323
BmsI GCATC 2 cut(s) 730, 799
BpiI GAAGAC 2 cut(s) 497, 591
BpmI CTGGAG 4 cut(s) 278, 293, 305, 446
BpuEI CTTGAG 1 cut(s) 592
Bsa29I ATCGAT 1 cut(s) 1026
BsaBI GATNNNNATC 1 cut(s) 441
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 300, 946
Bsc4I CCNNNNNNNGG 5 cut(s) 301, 322, 328, 405, 665
Bse1I ACTGG 1 cut(s) 991
Bse3DI GCAATG 2 cut(s) 354, 546
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 2 cut(s) 296, 323
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 2 cut(s) 300, 946
BseGI GGATG 2 cut(s) 37, 95
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 5 cut(s) 301, 322, 328, 405, 665
BseMI GCAATG 2 cut(s) 354, 546
BseMII CTCAG 2 cut(s) 497, 705
BseNI ACTGG 1 cut(s) 991
BseRI GAGGAG 2 cut(s) 33, 251
BseSI GKGCMC 1 cut(s) 971
BseXI GCAGC 5 cut(s) 186, 202, 354, 739, 799
BseYI CCCAGC 2 cut(s) 237, 864
Bsh1236I CGCG 5 cut(s) 183, 225, 244, 252, 267
BshFI GGCC 2 cut(s) 299, 332
BshNI GGYRCC 1 cut(s) 920
BshVI ATCGAT 1 cut(s) 1026
BsiHKAI GWGCWC 2 cut(s) 309, 971
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 154, 628
BslI CCNNNNNNNGG 5 cut(s) 301, 322, 328, 405, 665
BsmAI GTCTC 3 cut(s) 18, 335, 395
BsmBI CGTCTC 2 cut(s) 18, 395
BsmFI GGGAC 2 cut(s) 154, 628
BsnI GGCC 2 cut(s) 299, 332
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 309, 971
Bsp143I GATC 2 cut(s) 436, 1023
BspACI CCGC 7 cut(s) 172, 181, 223, 250, 265, 612, 862
BspANI GGCC 2 cut(s) 299, 332
BspCNI CTCAG 2 cut(s) 498, 706
BspDI ATCGAT 1 cut(s) 1026
BspFNI CGCG 5 cut(s) 183, 225, 244, 252, 267
BspLI GGNNCC 5 cut(s) 179, 221, 331, 517, 922
BspMAI CTGCAG 3 cut(s) 372, 757, 817
BspMI ACCTGC 1 cut(s) 746
BspPI GGATC 1 cut(s) 1031
BspQI GCTCTTC 2 cut(s) 180, 222
BspT107I GGYRCC 1 cut(s) 920
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 2 cut(s) 354, 546
BsrI ACTGG 1 cut(s) 991
BssECI CCNNGG 2 cut(s) 300, 946
BssMI GATC 2 cut(s) 436, 1023
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 2 cut(s) 296, 323
Bst4CI ACNGT 1 cut(s) 1011
Bst6I CTCTTC 4 cut(s) 133, 159, 180, 222
BstACI GRCGYC 1 cut(s) 153
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 176, 197, 218, 642, 1075
BstDEI CTNAG 2 cut(s) 506, 714
BstDSI CCRYGG 1 cut(s) 946
BstF5I GGATG 2 cut(s) 37, 95
BstFNI CGCG 5 cut(s) 183, 225, 244, 252, 267
BstH2I RGCGCY 3 cut(s) 196, 217, 425
BstHHI GCGC 4 cut(s) 195, 216, 244, 424
BstKTI GATC 2 cut(s) 439, 1026
BstMAI GTCTC 3 cut(s) 18, 335, 395
BstMBI GATC 2 cut(s) 436, 1023
BstMWI GCNNNNNNNGC 8 cut(s) 180, 196, 199, 222, 356, 749, 942, 966
BstNI CCWGG 2 cut(s) 296, 323
BstNSI RCATGY 2 cut(s) 533, 936
BstSCI CCNGG 2 cut(s) 294, 321
BstSFI CTRYAG 3 cut(s) 368, 753, 813
BstSLI GKGCMC 1 cut(s) 971
BstUI CGCG 5 cut(s) 183, 225, 244, 252, 267
BstV1I GCAGC 5 cut(s) 186, 202, 354, 739, 799
BstV2I GAAGAC 2 cut(s) 497, 591
BstXI CCANNNNNNTGG 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 2 cut(s) 299, 332
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 1 cut(s) 946
BtgZI GCGATG 1 cut(s) 1092
BtsCI GGATG 2 cut(s) 37, 95
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 5 cut(s) 176, 197, 218, 642, 1075
CfoI GCGC 4 cut(s) 195, 216, 244, 424
Cfr13I GGNCC 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 759, 921
CviAII CATG 3 cut(s) 530, 589, 933
CviQI GTAC 2 cut(s) 759, 921
DdeI CTNAG 2 cut(s) 506, 714
DpnI GATC 2 cut(s) 438, 1025
DpnII GATC 2 cut(s) 436, 1023
Eam1104I CTCTTC 4 cut(s) 133, 159, 180, 222
EarI CTCTTC 4 cut(s) 133, 159, 180, 222
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 300
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 309
Eco47III AGCGCT 3 cut(s) 194, 215, 423
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 681
Eco88I CYCGRG 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 294, 321
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 18, 395
FaeI CATG 3 cut(s) 533, 592, 936
FaiI YATR 8 cut(s) 441, 531, 590, 650, 837, 934, 1048, 1084
FalI AAGNNNNNCTT 2 cut(s) 672, 704
FaqI GGGAC 2 cut(s) 154, 628
FatI CATG 3 cut(s) 529, 588, 932
FauI CCCGC 2 cut(s) 179, 605
Fnu4HI GCNGC 5 cut(s) 191, 200, 368, 753, 813
FokI GGATG 2 cut(s) 24, 82
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 5 cut(s) 191, 200, 368, 753, 813
FspBI CTAG 1 cut(s) 851
GlaI GCGC 4 cut(s) 194, 215, 243, 423
GluI GCNGC 5 cut(s) 191, 200, 368, 753, 813
GsaI CCCAGC 2 cut(s) 241, 868
GsuI CTGGAG 4 cut(s) 278, 293, 305, 446
HaeII RGCGCY 3 cut(s) 196, 217, 425
HaeIII GGCC 2 cut(s) 299, 332
HapII CCGG 1 cut(s) 360
HgaI GACGC 1 cut(s) 161
HhaI GCGC 4 cut(s) 195, 216, 244, 424
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 533, 592, 936
Hin6I GCGC 4 cut(s) 193, 214, 242, 422
HinP1I GCGC 4 cut(s) 193, 214, 242, 422
HinfI GANTC 3 cut(s) 167, 254, 827
HpaII CCGG 1 cut(s) 360
HphI GGTGA 7 cut(s) 23, 82, 460, 590, 796, 824, 1001
Hpy166II GTNNAC 3 cut(s) 969, 992, 1068
Hpy188I TCNGA 7 cut(s) 51, 163, 340, 472, 507, 520, 781
Hpy188III TCNNGA 6 cut(s) 310, 417, 564, 631, 689, 879
Hpy8I GTNNAC 3 cut(s) 969, 992, 1068
Hpy99I CGWCG 3 cut(s) 155, 340, 1004
HpyAV CCTTC 9 cut(s) 115, 373, 445, 475, 515, 885, 947, 1025, 1049
HpyCH4III ACNGT 1 cut(s) 1011
HpyCH4IV ACGT 2 cut(s) 761, 999
HpyCH4V TGCA 6 cut(s) 370, 544, 743, 755, 815, 969
HpyF10VI GCNNNNNNNGC 8 cut(s) 180, 196, 199, 222, 356, 749, 942, 966
HpyF3I CTNAG 2 cut(s) 506, 714
HpySE526I ACGT 2 cut(s) 761, 999
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 533, 592, 936
HspAI GCGC 4 cut(s) 193, 214, 242, 422
KpnI GGTACC 1 cut(s) 924
Kzo9I GATC 2 cut(s) 436, 1023
LguI GCTCTTC 2 cut(s) 180, 222
LmnI GCTCC 6 cut(s) 183, 225, 304, 312, 749, 1034
Lsp1109I GCAGC 5 cut(s) 186, 202, 354, 739, 799
LweI GCATC 2 cut(s) 730, 799
MaeI CTAG 1 cut(s) 851
MaeII ACGT 2 cut(s) 761, 999
MaeIII GTNAC 2 cut(s) 245, 766
MalI GATC 2 cut(s) 438, 1025
MboI GATC 2 cut(s) 436, 1023
MhlI GDGCHC 2 cut(s) 309, 971
MluCI AATT 2 cut(s) 593, 774
MlyI GAGTC 2 cut(s) 176, 248
MmeI TCCRAC 5 cut(s) 162, 168, 318, 411, 624
MroXI GAANNNNTTC 3 cut(s) 514, 531, 684
MseI TTAA 1 cut(s) 282
MspA1I CMGCKG 2 cut(s) 174, 864
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 296, 323
MvaI CCWGG 2 cut(s) 296, 323
MvnI CGCG 5 cut(s) 183, 225, 244, 252, 267
MwoI GCNNNNNNNGC 8 cut(s) 180, 196, 199, 222, 356, 749, 942, 966
NdeII GATC 2 cut(s) 436, 1023
NlaIII CATG 3 cut(s) 533, 592, 936
NlaIV GGNNCC 5 cut(s) 179, 221, 331, 517, 922
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 2 cut(s) 533, 936
PceI AGGCCT 1 cut(s) 299
PciI ACATGT 1 cut(s) 529
PciSI GCTCTTC 2 cut(s) 180, 222
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 241
PdmI GAANNNNTTC 3 cut(s) 514, 531, 684
PfeI GAWTC 1 cut(s) 827
PflFI GACNNNGTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 5 cut(s) 192, 201, 369, 754, 814
PleI GAGTC 2 cut(s) 175, 248
PpsI GAGTC 2 cut(s) 175, 248
PscI ACATGT 1 cut(s) 529
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 294, 321
PspFI CCCAGC 2 cut(s) 237, 864
PspGI CCWGG 2 cut(s) 294, 321
PspN4I GGNNCC 5 cut(s) 179, 221, 331, 517, 922
PspPI GGNCC 1 cut(s) 330
PstI CTGCAG 3 cut(s) 372, 757, 817
PsyI GACNNNGTC 1 cut(s) 406
RsaI GTAC 2 cut(s) 760, 922
RsaNI GTAC 2 cut(s) 759, 921
SacI GAGCTC 1 cut(s) 309
SapI GCTCTTC 2 cut(s) 180, 222
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 5 cut(s) 191, 200, 368, 753, 813
Sau3AI GATC 2 cut(s) 436, 1023
Sau96I GGNCC 1 cut(s) 330
SchI GAGTC 2 cut(s) 176, 248
ScrFI CCNGG 2 cut(s) 296, 323
SduI GDGCHC 2 cut(s) 309, 971
SfaNI GCATC 2 cut(s) 730, 799
SfcI CTRYAG 3 cut(s) 368, 753, 813
SmlI CTYRAG 2 cut(s) 281, 607
SmoI CTYRAG 2 cut(s) 281, 607
Sse9I AATT 2 cut(s) 593, 774
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 7 cut(s) 172, 181, 223, 250, 265, 612, 862
SspMI CTAG 1 cut(s) 851
SstI GAGCTC 1 cut(s) 309
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 294, 321
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 1011
TaiI ACGT 2 cut(s) 764, 1002
TaqI TCGA 4 cut(s) 410, 535, 1002, 1026
TaqII GACCGA 1 cut(s) 692
TasI AATT 2 cut(s) 593, 774
TfiI GAWTC 1 cut(s) 827
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 5 cut(s) 190, 199, 367, 752, 812
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 840, 1044
Tth111I GACNNNGTC 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 301
Vha464I CTTAAG 1 cut(s) 281
VneI GTGCAC 1 cut(s) 967
XapI RAATTY 2 cut(s) 593, 774
XceI RCATGY 2 cut(s) 533, 936
XmnI GAANNNNTTC 3 cut(s) 514, 531, 684
XspI CTAG 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.