RchiOBHm_Chr4g0423871

Major allergen Pru ar 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009655
Physical Location & Seq
Reverse (-)
49463767 .. 49464505
739 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
ATGGGGGTGACCACCTATACAGACGAGTACACTTCCCCAATCCCTCCATGCAGGTTGTTCAAGGCATTGGTCCTTGAGGCTGACATCCTCGTTCCAATGCTCATGCCGGAGGCTCTTAAGAGCATCGACACCATCCAAGGTGACGGAAGAGCAGGAAGCATCAAGCAGATCAACTTCGCCGAAGGCATGCATATAAAGGAATCTAGCATGACACACTGTGTAGGGTGGACTTTTGTTGAAGGCAGCCAGATCATTTCTGTGCGAAATCGGGTTGATGAGGTGGATGACGAGAACTACGTGTATAATTACACTTTGATTGATGGAGATATTTCAGTAATGGAGAAACTTGAGTTTATTTCTTATGAAGTTAAGTTTGAGGCTACACCAGAAGGTGGCAGTAAGAACAAGATGGTGAGCAAGTACCACACCAAAGGTGACATTGTGCTCAATGAGGAAGACATAAAGGCCGGCAGAGAAAAGGCCTTGGGGATGTACAAAGTTGTGGAAGCCTACCTCCTCCAAAACCCAGATATCTATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

180

Amino Acids

20.26

Weight (kDa)

4.72

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 75 - 175 1.4e-09 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccB7I CCANNNNNTGG 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 3 cut(s) 29, 422, 494
AfiI CCNNNNNNNGG 1 cut(s) 392
AflII CTTAAG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 2 cut(s) 61, 239
Alw21I GWGCWC 1 cut(s) 447
AoxI GGCC 2 cut(s) 465, 480
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 4 cut(s) 19, 152, 424, 446
AvaII GGWCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 462
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 255
BccI CCATC 3 cut(s) 140, 314, 403
BfaI CTAG 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 132, 168
BpiI GAAGAC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 95, 368
BsaAI YACGTR 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 136, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse118I RCCGGY 1 cut(s) 467
BseDI CCNNGG 2 cut(s) 136, 483
BseGI GGATG 4 cut(s) 84, 132, 289, 495
BseLI CCNNNNNNNGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 255
BshFI GGCC 2 cut(s) 467, 482
BsiHKAI GWGCWC 1 cut(s) 447
BsiSI CCGG 2 cut(s) 107, 468
BslI CCNNNNNNNGG 1 cut(s) 392
BsnI GGCC 2 cut(s) 467, 482
Bsp1286I GDGCHC 1 cut(s) 447
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 2 cut(s) 168, 249
BspANI GGCC 2 cut(s) 467, 482
BspMI ACCTGC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 467
BsrGI TGTACA 1 cut(s) 492
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 2 cut(s) 136, 483
BssMI GATC 2 cut(s) 168, 249
BssT1I CCWWGG 2 cut(s) 136, 483
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 142
BstAFI CTTAAG 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 492
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 2 cut(s) 188, 469
BstEII GGTNACC 1 cut(s) 7
BstF5I GGATG 4 cut(s) 84, 132, 289, 495
BstKTI GATC 2 cut(s) 171, 252
BstMBI GATC 2 cut(s) 168, 249
BstNSI RCATGY 1 cut(s) 190
BstPI GGTNACC 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 462
BsuRI GGCC 2 cut(s) 467, 482
BtsCI GGATG 4 cut(s) 84, 132, 289, 495
BtsIMutI CAGTG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 188, 469
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 3 cut(s) 28, 421, 493
CviAII CATG 4 cut(s) 48, 103, 187, 208
CviJI RGCY 7 cut(s) 80, 113, 246, 380, 467, 482, 509
CviKI_1 RGCY 7 cut(s) 80, 113, 246, 380, 467, 482, 509
CviQI GTAC 3 cut(s) 28, 421, 493
DpnI GATC 2 cut(s) 170, 251
DpnII GATC 2 cut(s) 168, 249
DraIII CACNNNGTG 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 2 cut(s) 136, 483
Eco147I AGGCCT 1 cut(s) 482
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 1 cut(s) 70
Eco91I GGTNACC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 7
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 136, 483
EcoT22I ATGCAT 1 cut(s) 192
ErhI CCWWGG 2 cut(s) 136, 483
FaeI CATG 4 cut(s) 51, 106, 190, 211
FatI CATG 4 cut(s) 47, 102, 186, 207
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 4 cut(s) 71, 119, 296, 502
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 2 cut(s) 467, 482
HapII CCGG 2 cut(s) 107, 468
Hin1II CATG 4 cut(s) 51, 106, 190, 211
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 107, 468
HphI GGTGA 4 cut(s) 19, 152, 424, 446
Hpy166II GTNNAC 2 cut(s) 30, 228
Hpy8I GTNNAC 2 cut(s) 30, 228
HpyAV CCTTC 3 cut(s) 176, 233, 383
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 51, 190
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 4 cut(s) 51, 106, 190, 211
KroI GCCGGC 1 cut(s) 467
KroNI GCCGGC 1 cut(s) 469
Kzo9I GATC 2 cut(s) 168, 249
LguI GCTCTTC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 37, 120, 138, 260, 399, 481
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 2 cut(s) 132, 168
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 7, 140, 434
MalI GATC 2 cut(s) 170, 251
MboI GATC 2 cut(s) 168, 249
MboII GAAGA 2 cut(s) 159, 467
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 1 cut(s) 304
MnlI CCTC 9 cut(s) 54, 70, 98, 103, 271, 370, 445, 524, 527
Mph1103I ATGCAT 1 cut(s) 192
MroNI GCCGGC 1 cut(s) 467
MseI TTAA 2 cut(s) 117, 369
MslI CAYNNNNRTG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 116
MspI CCGG 2 cut(s) 107, 468
NaeI GCCGGC 1 cut(s) 469
NdeII GATC 2 cut(s) 168, 249
NgoMIV GCCGGC 1 cut(s) 467
NlaIII CATG 4 cut(s) 51, 106, 190, 211
NmuCI GTSAC 3 cut(s) 7, 140, 434
NsiI ATGCAT 1 cut(s) 192
NspI RCATGY 1 cut(s) 190
PaeI GCATGC 1 cut(s) 190
PceI AGGCCT 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 392
PkrI GCNGC 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 70
RsaI GTAC 3 cut(s) 29, 422, 494
RsaNI GTAC 3 cut(s) 28, 421, 493
RseI CAYNNNNRTG 1 cut(s) 257
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 117, 369
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 2 cut(s) 168, 249
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 447
SetI ASST 8 cut(s) 17, 56, 142, 282, 300, 394, 436, 516
SfaNI GCATC 2 cut(s) 132, 168
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 3 cut(s) 74, 116, 347
SmoI CTYRAG 3 cut(s) 74, 116, 347
SphI GCATGC 1 cut(s) 190
Sse9I AATT 1 cut(s) 304
SseBI AGGCCT 1 cut(s) 482
SspMI CTAG 1 cut(s) 204
StuI AGGCCT 1 cut(s) 482
StyI CCWWGG 2 cut(s) 136, 483
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 126
TasI AATT 1 cut(s) 304
TatI WGTACW 2 cut(s) 27, 492
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 2 cut(s) 117, 369
Tru9I TTAA 2 cut(s) 117, 369
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 3 cut(s) 7, 140, 434
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 3 cut(s) 7, 140, 434
TspDTI ATGAA 1 cut(s) 378
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 221
Van91I CCANNNNNTGG 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 1 cut(s) 190
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.