Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004276

Physical Location & Seq

Genomic Coordinates Reverse (-)

1079260 .. 1082505

Gene Structure 3246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGGAACGATACAGAGTTGGTGACCCCAGGTGAAAAGCTTGGAAGAGCCTCCGAATTCAAAGCAGGCAGAGGTGCCTACGTGTCACCTGATAATCTCACCGTCTACGCTTCCCTCACTGGCCTCCGCCACATCGTATCCCCGCCTCCTGACTCACCGGACCAGAGACCCATTGTGGAAGTAACTGGTCACAAGGCCCATGGTGCTATTCCGGAGCCTGGATCTATTGTCATTGCTAGAGTTACCAAAGTGATGGCCAGAATGGCTTCTGCTGATATCATGTGTCTAGGCACTAAGTCTGTGCGGGAAAACTTTACCGGCATTATTAGGCTTCAAGATATTAGAGCAACCGAGATTGATAAAGTGGATATGCACAAGTCTTTTCACCCTGGTGACATTGTCAGAGCTATTGTGCTATCCCTTGGAGACGCAAGAGCTTACTTTCTGTCAACTGCAAAGAATGAGCTGGGTGTTATTTCTGCTCAGAGTGCAGCAGGTGTGCCAATGGTGGCAATAAGTTGGACAGAGATGCAATGCCCCATCACAGGGCAAATTGAGCACAGAAAGGTTGCTAAGGTCGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008519 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015695 GO:0015696 GO:0015837 GO:0015843 GO:0016020 GO:0016021 GO:0019755 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072488 GO:0098655

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

Ammonium_transp

Protein Analysis

195

Amino Acids

20.81

Weight (kDa)

8.58

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECR1_N	PF14382	7 - 46	1.7e-10	Exosome complex exonuclease RRP4 N-terminal region
EXOSC1	PF10447	100 - 141	8.7e-12	Exosome component EXOSC1/CSL4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004276)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38890
fragaria_vesca	FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01503 FvH4_6g01510
malus_domestica	MD11G1123700.v1.1 MD11G1124300.v1.1 MD12G1250600.v1.1
prunus_persica	Prupe.6G093000_v2.0.a1 Prupe.6G093000_v2.0.a1 Prupe.6G352700_v2.0.a1 Prupe.6G352700_v2.0.a1
pyrus_communis	pycom11g10450 pycom12g23060
rosa_chinensis	RchiOBHm_Chr3g0449171 RchiOBHm_Chr3g0449181 RchiOBHm_Chr5g0061031
rosa_laevigata	RLG00000035421
rosa_multiflora	Rmu_co8387241.1_g000001 Rmu_sc0000640.1_g000004 Rmu_sc0004874.1_g000009 Rmu_sc0006661.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019610 Rroxscaffold_6G00427230
rosa_rugosa	Rorug02G0618600 Rorug05G0336200
rosa_samantha	Rh1AG412000 Rh3AG016900
rosa_wichuraiana	Rw3G001270 Rw3G001280 Rw5G037580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	3 cut(s)	127, 143, 304
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	61, 335
AjnI	CCWGG	3 cut(s)	28, 217, 388
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	4 cut(s)	40, 407, 437, 466
AluI	AGCT	4 cut(s)	40, 407, 437, 466
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	2 cut(s)	160, 420
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	3 cut(s)	121, 195, 255
ApeKI	GCWGC	1 cut(s)	491
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	265
AspS9I	GGNCC	2 cut(s)	160, 196
AsuHPI	GGTGA	7 cut(s)	34, 44, 78, 91, 147, 377, 404
AvaII	GGWCC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	247, 548
BciT130I	CCWGG	3 cut(s)	30, 219, 390
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	160, 420
BfaI	CTAG	2 cut(s)	237, 287
BfuAI	ACCTGC	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	148
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	492
BlsI	GCNGC	1 cut(s)	493
Bme1390I	CCNGG	3 cut(s)	30, 219, 390
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 196
BmiI	GGNNCC	2 cut(s)	76, 216
BmrFI	CCNGG	3 cut(s)	30, 219, 390
BmsI	GCATC	1 cut(s)	519
Bpu10I	CCTNAGC	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	4 cut(s)	28, 199, 388, 421
BsaWI	WCCGGW	2 cut(s)	157, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 545, 546
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	124, 190
Bse3DI	GCAATG	2 cut(s)	231, 539
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	30, 219, 390
BseDI	CCNNGG	4 cut(s)	28, 199, 388, 421
BseLI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BseMI	GCAATG	2 cut(s)	231, 539
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	124, 190
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	123, 197, 257
BshNI	GGYRCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	3 cut(s)	158, 212, 318
BslI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BsmAI	GTCTC	2 cut(s)	160, 420
BsmBI	CGTCTC	1 cut(s)	420
BsnI	GGCC	3 cut(s)	123, 197, 257
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	3 cut(s)	127, 143, 304
BspANI	GGCC	3 cut(s)	123, 197, 257
BspCNI	CTCAG	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	76, 216
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	2 cut(s)	231, 539
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	124, 190
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	4 cut(s)	28, 199, 388, 421
BssMI	GATC	1 cut(s)	221
BssT1I	CCWWGG	2 cut(s)	199, 421
Bst2UI	CCWGG	3 cut(s)	30, 219, 390
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	294, 483, 573
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	2 cut(s)	160, 420
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 263, 488, 556
BstNI	CCWGG	3 cut(s)	30, 219, 390
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	28, 217, 388
BstV1I	GCAGC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	123, 197, 257
BtgI	CCRYGG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	160, 196
CseI	GACGC	1 cut(s)	437
CviAII	CATG	2 cut(s)	200, 280
DdeI	CTNAG	3 cut(s)	294, 483, 573
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	199, 421
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	28, 217, 388
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	199, 421
ErhI	CCWWGG	2 cut(s)	199, 421
Esp3I	CGTCTC	1 cut(s)	420
FaeI	CATG	2 cut(s)	203, 283
FaiI	YATR	3 cut(s)	201, 281, 371
FatI	CATG	2 cut(s)	199, 279
FauI	CCCGC	2 cut(s)	150, 297
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	492
Fsp4HI	GCNGC	1 cut(s)	492
FspBI	CTAG	2 cut(s)	237, 287
GluI	GCNGC	1 cut(s)	492
GsaI	CCCAGC	1 cut(s)	470
HaeIII	GGCC	3 cut(s)	123, 197, 257
HapII	CCGG	3 cut(s)	158, 212, 318
HgaI	GACGC	1 cut(s)	437
Hin1II	CATG	2 cut(s)	203, 283
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	3 cut(s)	158, 212, 318
HphI	GGTGA	7 cut(s)	34, 44, 78, 91, 147, 377, 404
Hpy166II	GTNNAC	2 cut(s)	106, 450
Hpy188I	TCNGA	4 cut(s)	55, 404, 486, 581
Hpy188III	TCNNGA	3 cut(s)	149, 212, 335
Hpy8I	GTNNAC	2 cut(s)	106, 450
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	373, 455, 491, 532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 263, 488, 556
HpyF3I	CTNAG	3 cut(s)	294, 483, 573
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	203, 283
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	237, 287
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	6 cut(s)	22, 84, 181, 188, 241, 392
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	1 cut(s)	57
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	56, 552
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	500, 559
MnlI	CCTC	6 cut(s)	61, 65, 125, 134, 156, 575
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	3 cut(s)	158, 212, 318
MspR9I	CCNGG	3 cut(s)	30, 219, 390
MvaI	CCWGG	3 cut(s)	30, 219, 390
MwoI	GCNNNNNNNGC	4 cut(s)	203, 263, 488, 556
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	203, 283
NlaIV	GGNNCC	2 cut(s)	76, 216
NmuCI	GTSAC	4 cut(s)	22, 84, 188, 392
OliI	CACNNNNGTG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	265
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	493
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	28, 217, 388
PspEI	GGTNACC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	28, 217, 388
PspN4I	GGNNCC	2 cut(s)	76, 216
PspPI	GGNCC	2 cut(s)	160, 196
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	40
SatI	GCNGC	1 cut(s)	492
Sau3AI	GATC	1 cut(s)	221
Sau96I	GGNCC	2 cut(s)	160, 196
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	3 cut(s)	30, 219, 390
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	1 cut(s)	519
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	2 cut(s)	56, 552
SsiI	CCGC	3 cut(s)	127, 143, 304
SspMI	CTAG	2 cut(s)	237, 287
StyD4I	CCNGG	3 cut(s)	28, 217, 388
StyI	CCWWGG	2 cut(s)	199, 421
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	56, 552
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	4 cut(s)	22, 84, 188, 392
TseI	GCWGC	1 cut(s)	491
Tsp45I	GTSAC	4 cut(s)	22, 84, 188, 392
TspRI	CASTG	1 cut(s)	124
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	2 cut(s)	237, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.