RchiOBHm_Chr3g0456611

FES

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007319
Physical Location & Seq
Forward (+)
6085190 .. 6092449
7260 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2331 bp
ATGGTAGCCACGACAAAGGGAAAGGGAAGGAGGCAAGAAAAGCTTGAGAAATTAGAACATGGTGAACTAGCTCACCCATGGAAGCTTCAATTGCAAAATGAAGTTAAGGAGGGGGACAAACATGACCCGAACTCTGAATTTTGGGATAAGGAGAGACAATTCTTTGAGGGTCGGATCAACTTATTTTTAACTCGTATGCGCATAGTTCAAGGAAATAGAAAATTTTCACAATGGGATGGATCAGTTATGGATTCGATAGTCGGAGTTTTTTTAACACAGAACGTATCAGATCATCTATCCAGTTCTGCCTTTATATCACTCGCTGCAGCTTTCCCATATCAGCCCAGTTGTAACCAAGAATTAACTTATGCAAACTCAGAGCCAAGTTGTGAGCAATCAAGAATTGTTAAAATTGAGGAATTGGTAGAGGGTGGAATCTCAAAGTCCAGCTGTGAACAATCAAATGACCAAACATATTGTGAAGATATAAATAGTGGCAGCCATAAATTGGTTGGAAGTAACATGGTATTTGATAAAGAGTCGTTCACACAAGAAGCCACAACTACAATGAAGTACGAAAATCAGAAGTCAAGTGATTGCGAAATGGTATTAGCCAAACAAGTTGAGTTGCAGCAAAATTTTGAGGGTCAAGATTATTACGTGGACATGCCATCTGATAAGCCTGACTGCTCGATTGATATTATTACTGAAAATTCGCTTTCTTACTTCAATGAGGAAAAGCAAAGAGGAAAGAAGTTGAAGGTGGATGCTCGAGAAATAAATAATGAGGTTGCTATGGTGAATGGAAAACCTGATTGGGATTATTATAGGAGAGAAATTGCAAAGGAAAGAAAGATCAGGCACATGGCGGATTCGGTAGACTGGCAGGCCGTTAGACAAGCAGATGTTGATGATGTTGCTGAAGCCATCAAAGGACGTGGACAACATCGTGTCATCGCACATCGAATAAAGAAATTTCTTAATGACGTGAATCAAGACCATAAAGAAATTAACCTTGAGTGGCTAAGATGGGCTCCAGACAAACTAGCAAGGAAATATTTGACTAATATAGAGGGAATTGGCCTGAAAAGTGTGGAGTGCGTGCGCCTTTTAGCACTGAAGCAGATAGCCTTCCCGGTGGACGTTAATGTTGGCAGGATAGCCATTCGTTTAGGGTGGGTGCCTATGCAACCATTACCTGAAGATGTTCAGATACACGTATTAGAAGAGATGCCGGTTATGGACAATATTCAAAAGTATCTTTGGCCTCGCCTAATGAAATTGACGTTCGAAGAATTGTATGAACTACACTATCAAATGATAACCTTTGGAAAGGTTTATTGTACCAAACGTAAACCTAATTGTCATTCATGTCCAATGAAGAACGAGTGCAAGTATTATCTTAGTGCATATGCAAGTTCAAAATATGCTGCTTTACCGAAGTCAATGAAGAAGCAAGGACAAAAGAAAACTGATGTGGTTATTTGCAATAATCATCTTTCTTCTGGGTATGAGTCAGAAAATGCAGCATCACAATCATATCTTGAGGACACTACTAAATTAGAATATCAAATAAAAGATTGTGAACCGATAATTGAAGAACCAGCATCACCTCGACCGTCATTAGTGGAACCAGAATATGTGGAAAGAGACATTGAAGATTTATTCCTTGATGATCCTTTTAAAGAGTTCGTAACAAGAAGGCCATATATGAATACATTTCGAGGAAGTGATATCTCAACACTAGTTCCCTTTATGACCCCAGAAGAAGCTACTTTCATCCCCGCTCGTAGACTAAAAGAAGTGGACCGTTTGAGGACAAAACACTCAGTCTACGTGATTAAAGATCAAGGCCCTTTATTTAAAGAGGTAAATCAAATGGAAAAAGTATCTCAATCACCTGATCAAAACAGATGCAGTTGCAAGGGATCTAATGATTCATCATGTGATGGTGAGAAGACATGTTTTTCTTGTAACAGTCTTTCAACACAAGCTAATACTGTTCAAGGAACAATTTTGATACCTTGTAGAACAGCAATGAGGGGAAGTTTTCCATTAAACGGTACATATTTTCAAATTAATGAGGTTTTTGCGGATCATGAATCCAGTATACGCCCCATCAACGTTCATAGAGATTTGTTATGGGATCAGACGAGAAGAGATGTATACTTTGGAACATCAACAAGTGCAATTCTTAAAGGTTCTATTTGCGTTAGAGCATTTAATCGGGAAACACGCAGGCCTGAGCCTCTATTAGAAAGGTTTCACATTTCAACCGTCAAAACCGCAAAGAAAGGAAAGAAAAAAGCGGAACAGAAAGAAGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Perm-CXXC RRM_DME

Protein Analysis

776

Amino Acids

89.37

Weight (kDa)

6.34

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_DME PF15628 670 - 757 1.8e-35 RRM in Demeter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 1180
AccB7I CCANNNNNTGG 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 1787
AccI GTMKAC 5 cut(s) 879, 1792, 1833, 2110, 2166
AciI CCGC 5 cut(s) 869, 1785, 2093, 2286, 2309
AclI AACGTT 1 cut(s) 2124
AclWI GGATC 6 cut(s) 182, 247, 1670, 1936, 2103, 2154
AcsI RAATTY 5 cut(s) 137, 221, 637, 712, 974
AcuI CTGAAG 3 cut(s) 942, 1139, 1221
AfaI GTAC 3 cut(s) 575, 1345, 2065
AfiI CCNNNNNNNGG 2 cut(s) 508, 2060
AflIII ACRYGT 2 cut(s) 1216, 1961
AhlI ACTAGT 1 cut(s) 1744
AjiI CACGTC 2 cut(s) 938, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
AluBI AGCT 7 cut(s) 43, 71, 85, 329, 450, 1772, 1994
AluI AGCT 7 cut(s) 43, 71, 85, 329, 450, 1772, 1994
Alw26I GTCTC 2 cut(s) 148, 1644
AlwI GGATC 6 cut(s) 182, 247, 1670, 1936, 2103, 2154
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 6 cut(s) 888, 1081, 1265, 1703, 1852, 2240
ApeKI GCWGC 6 cut(s) 323, 326, 498, 631, 1430, 1526
ApoI RAATTY 5 cut(s) 137, 221, 637, 712, 974
AseI ATTAAT 1 cut(s) 2079
Asp700I GAANNNNTTC 3 cut(s) 223, 1206, 2262
AspLEI GCGC 2 cut(s) 201, 1107
AspS9I GGNCC 2 cut(s) 1807, 1853
AsuC2I CCSGG 1 cut(s) 1136
AsuHPI GGTGA 6 cut(s) 65, 74, 811, 1602, 1890, 1964
AsuII TTCGAA 1 cut(s) 1290
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 1 cut(s) 1807
BanI GGYRCC 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 1036
BbsI GAAGAC 1 cut(s) 1964
BbvI GCAGC 6 cut(s) 310, 338, 510, 643, 1417, 1538
BccI CCATC 6 cut(s) 230, 679, 935, 1023, 1943, 2126
BceAI ACGGC 1 cut(s) 875
BclI TGATCA 1 cut(s) 1903
BcnI CCSGG 1 cut(s) 1136
BcoDI GTCTC 2 cut(s) 148, 1644
BcuI ACTAGT 1 cut(s) 1744
BfaI CTAG 3 cut(s) 68, 1046, 1745
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 6 cut(s) 324, 327, 499, 632, 1431, 1527
BlsI GCNGC 6 cut(s) 325, 328, 500, 633, 1432, 1528
Bme1390I CCNGG 1 cut(s) 1136
Bme18I GGWCC 1 cut(s) 1807
BmeT110I CYCGRG 1 cut(s) 771
BmgBI CACGTC 2 cut(s) 938, 988
BmgT120I GGNCC 2 cut(s) 1807, 1853
BmiI GGNNCC 3 cut(s) 1035, 1182, 1632
BmrFI CCNGG 1 cut(s) 1136
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 5 cut(s) 757, 1221, 1538, 1616, 1904
BmuI ACTGGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 1964
BpmI CTGGAG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 2244
Bpu14I TTCGAA 1 cut(s) 1290
BpuEI CTTGAG 3 cut(s) 65, 1037, 1565
BpuMI CCSGG 1 cut(s) 1136
BsaAI YACGTR 3 cut(s) 661, 1219, 1837
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 2060
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 4 cut(s) 300, 345, 887, 2106
Bse3DI GCAATG 1 cut(s) 2043
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 241, 772, 1779
BseLI CCNNNNNNNGG 2 cut(s) 508, 2060
BseMI GCAATG 1 cut(s) 2043
BseMII CTCAG 3 cut(s) 390, 1842, 2235
BseNI ACTGG 4 cut(s) 300, 345, 887, 2106
BseXI GCAGC 6 cut(s) 310, 338, 510, 643, 1417, 1538
Bsh1285I CGRYCG 1 cut(s) 1619
BshFI GGCC 6 cut(s) 890, 1083, 1267, 1705, 1854, 2242
BshNI GGYRCC 1 cut(s) 1180
BsiEI CGRYCG 1 cut(s) 1619
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 2 cut(s) 1136, 1235
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 508, 2060
BsmAI GTCTC 2 cut(s) 148, 1644
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 6 cut(s) 890, 1083, 1267, 1705, 1854, 2242
BsoBI CYCGRG 1 cut(s) 771
Bsp119I TTCGAA 1 cut(s) 1290
Bsp1286I GDGCHC 1 cut(s) 1036
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 5 cut(s) 869, 1785, 2093, 2286, 2309
BspANI GGCC 6 cut(s) 890, 1083, 1267, 1705, 1854, 2242
BspCNI CTCAG 3 cut(s) 389, 1841, 2236
BspHI TCATGA 1 cut(s) 2098
BspLI GGNNCC 3 cut(s) 1035, 1182, 1632
BspMAI CTGCAG 1 cut(s) 328
BspPI GGATC 6 cut(s) 182, 247, 1670, 1936, 2103, 2154
BspT104I TTCGAA 1 cut(s) 1290
BspT107I GGYRCC 1 cut(s) 1180
BsrBI CCGCTC 1 cut(s) 1787
BsrDI GCAATG 1 cut(s) 2043
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 4 cut(s) 300, 345, 887, 2106
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 1 cut(s) 77
BssNAI GTATAC 2 cut(s) 2111, 2167
BssT1I CCWWGG 1 cut(s) 77
Bst1107I GTATAC 2 cut(s) 2111, 2167
Bst4CI ACNGT 6 cut(s) 1620, 1811, 1979, 2002, 2063, 2278
Bst6I CTCTTC 2 cut(s) 1221, 2152
BstBAI YACGTR 3 cut(s) 661, 1219, 1837
BstBI TTCGAA 1 cut(s) 1290
BstC8I GCNNGC 3 cut(s) 888, 1103, 2240
BstDEI CTNAG 5 cut(s) 376, 1025, 1403, 1828, 2244
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 3 cut(s) 241, 772, 1779
BstHHI GCGC 2 cut(s) 201, 1107
BstMAI GTCTC 2 cut(s) 148, 1644
BstMCI CGRYCG 1 cut(s) 1619
BstMWI GCNNNNNNNGC 2 cut(s) 40, 91
BstNSI RCATGY 2 cut(s) 670, 1965
BstSCI CCNGG 1 cut(s) 1134
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 6 cut(s) 310, 338, 510, 643, 1417, 1538
BstV2I GAAGAC 1 cut(s) 1964
BstX2I RGATCY 1 cut(s) 1928
BstYI RGATCY 1 cut(s) 1928
BstZ17I GTATAC 2 cut(s) 2111, 2167
BsuRI GGCC 6 cut(s) 890, 1083, 1267, 1705, 1854, 2242
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 940
BtrI CACGTC 2 cut(s) 938, 988
BtsCI GGATG 3 cut(s) 241, 772, 1779
BtsIMutI CAGTG 1 cut(s) 1115
Cac8I GCNNGC 3 cut(s) 888, 1103, 2240
CciI TCATGA 1 cut(s) 2098
CfoI GCGC 2 cut(s) 201, 1107
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 2 cut(s) 1807, 1853
Csp6I GTAC 3 cut(s) 574, 1344, 2064
CspCI CAANNNNNGTGG 2 cut(s) 919, 954
CviQI GTAC 3 cut(s) 574, 1344, 2064
DdeI CTNAG 5 cut(s) 376, 1025, 1403, 1828, 2244
DraI TTTAAA 2 cut(s) 1684, 1864
Eam1104I CTCTTC 2 cut(s) 1221, 2152
EarI CTCTTC 2 cut(s) 1221, 2152
EciI GGCGGA 1 cut(s) 884
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 2242
Eco24I GRGCYC 1 cut(s) 1036
Eco32I GATATC 1 cut(s) 1735
Eco47I GGWCC 1 cut(s) 1807
Eco57I CTGAAG 3 cut(s) 942, 1139, 1221
Eco88I CYCGRG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 1853
EcoRV GATATC 1 cut(s) 1735
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 1036
ErhI CCWWGG 1 cut(s) 77
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 128
FauI CCCGC 1 cut(s) 1792
FauNDI CATATG 1 cut(s) 1411
FbaI TGATCA 1 cut(s) 1903
FblI GTMKAC 5 cut(s) 879, 1792, 1833, 2110, 2166
Fnu4HI GCNGC 6 cut(s) 324, 327, 499, 632, 1431, 1527
FokI GGATG 3 cut(s) 248, 779, 1766
FriOI GRGCYC 1 cut(s) 1036
Fsp4HI GCNGC 6 cut(s) 324, 327, 499, 632, 1431, 1527
FspAI RTGCGCAY 1 cut(s) 200
FspBI CTAG 3 cut(s) 68, 1046, 1745
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 200, 1106
GluI GCNGC 6 cut(s) 324, 327, 499, 632, 1431, 1527
GsuI CTGGAG 1 cut(s) 1020
HaeIII GGCC 6 cut(s) 890, 1083, 1267, 1705, 1854, 2242
HapII CCGG 2 cut(s) 1136, 1235
HhaI GCGC 2 cut(s) 201, 1107
Hin6I GCGC 2 cut(s) 199, 1105
HinP1I GCGC 2 cut(s) 199, 1105
HindIII AAGCTT 2 cut(s) 41, 83
HinfI GANTC 8 cut(s) 251, 435, 539, 872, 991, 1514, 1937, 2102
HpaII CCGG 2 cut(s) 1136, 1235
HphI GGTGA 6 cut(s) 65, 74, 811, 1602, 1890, 1964
Hpy188III TCNNGA 8 cut(s) 399, 650, 773, 995, 1037, 1544, 2099, 2228
HpyAV CCTTC 4 cut(s) 21, 754, 1141, 1695
HpyCH4III ACNGT 6 cut(s) 1620, 1811, 1979, 2002, 2063, 2278
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 91
HpyF3I CTNAG 5 cut(s) 376, 1025, 1403, 1828, 2244
HspAI GCGC 2 cut(s) 199, 1105
Ksp22I TGATCA 1 cut(s) 1903
LmnI GCTCC 1 cut(s) 1039
Lsp1109I GCAGC 6 cut(s) 310, 338, 510, 643, 1417, 1538
LweI GCATC 5 cut(s) 757, 1221, 1538, 1616, 1904
MaeI CTAG 3 cut(s) 68, 1046, 1745
MaeIII GTNAC 4 cut(s) 350, 518, 1693, 1973
MbiI CCGCTC 1 cut(s) 1787
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 1 cut(s) 1928
MhlI GDGCHC 1 cut(s) 1036
MlyI GAGTC 2 cut(s) 548, 1523
MmeI TCCRAC 3 cut(s) 152, 241, 493
MroXI GAANNNNTTC 3 cut(s) 223, 1206, 2262
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 2 cut(s) 1136, 1235
MspR9I CCNGG 1 cut(s) 1136
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 40, 91
NciI CCSGG 1 cut(s) 1136
NcoI CCATGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 1411
NlaIV GGNNCC 3 cut(s) 1035, 1182, 1632
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 2 cut(s) 670, 1965
NspV TTCGAA 1 cut(s) 1290
PaeR7I CTCGAG 1 cut(s) 771
PagI TCATGA 1 cut(s) 2098
PceI AGGCCT 1 cut(s) 2242
PciI ACATGT 1 cut(s) 1961
PdmI GAANNNNTTC 3 cut(s) 223, 1206, 2262
PfeI GAWTC 6 cut(s) 251, 435, 872, 991, 1937, 2102
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 6 cut(s) 325, 328, 500, 633, 1432, 1528
PleI GAGTC 2 cut(s) 547, 1522
PpsI GAGTC 2 cut(s) 547, 1522
Ppu21I YACGTR 3 cut(s) 661, 1219, 1837
PscI ACATGT 1 cut(s) 1961
PshBI ATTAAT 1 cut(s) 2079
Psp1406I AACGTT 1 cut(s) 2124
PspN4I GGNNCC 3 cut(s) 1035, 1182, 1632
PspPI GGNCC 2 cut(s) 1807, 1853
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 1 cut(s) 1928
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 3 cut(s) 575, 1345, 2065
RsaNI GTAC 3 cut(s) 574, 1344, 2064
SatI GCNGC 6 cut(s) 324, 327, 499, 632, 1431, 1527
Sau96I GGNCC 2 cut(s) 1807, 1853
SchI GAGTC 2 cut(s) 548, 1523
ScrFI CCNGG 1 cut(s) 1136
SduI GDGCHC 1 cut(s) 1036
SfaNI GCATC 5 cut(s) 757, 1221, 1538, 1616, 1904
SfcI CTRYAG 1 cut(s) 324
Sfr274I CTCGAG 1 cut(s) 771
SfuI TTCGAA 1 cut(s) 1290
SinI GGWCC 1 cut(s) 1807
SlaI CTCGAG 1 cut(s) 771
SmlI CTYRAG 4 cut(s) 44, 771, 1016, 1544
SmoI CTYRAG 4 cut(s) 44, 771, 1016, 1544
SpeI ACTAGT 1 cut(s) 1744
SseBI AGGCCT 1 cut(s) 2242
SsiI CCGC 5 cut(s) 869, 1785, 2093, 2286, 2309
SspI AATATT 2 cut(s) 1058, 1249
SspMI CTAG 3 cut(s) 68, 1046, 1745
StuI AGGCCT 1 cut(s) 2242
StyD4I CCNGG 1 cut(s) 1134
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 6 cut(s) 1620, 1811, 1979, 2002, 2063, 2278
TaqI TCGA 7 cut(s) 254, 692, 772, 964, 1290, 1615, 1723
TfiI GAWTC 6 cut(s) 251, 435, 872, 991, 1937, 2102
TscAI CASTG 1 cut(s) 1122
TseI GCWGC 6 cut(s) 323, 326, 498, 631, 1430, 1526
TspRI CASTG 1 cut(s) 1122
Van91I CCANNNNNTGG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 1807
VspI ATTAAT 1 cut(s) 2079
XapI RAATTY 5 cut(s) 137, 221, 637, 712, 974
XceI RCATGY 2 cut(s) 670, 1965
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XhoI CTCGAG 1 cut(s) 771
XmiI GTMKAC 5 cut(s) 879, 1792, 1833, 2110, 2166
XmnI GAANNNNTTC 3 cut(s) 223, 1206, 2262
XspI CTAG 3 cut(s) 68, 1046, 1745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.