Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009484

Physical Location & Seq

Genomic Coordinates Reverse (-)

20677731 .. 20679408

Gene Structure 1678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGATCTTCAACCCTCCAATGAATCTCAGAAGCCCCAAGGTTTCCCCTTTTCCATTTTTACCAGAAGAGACCTTCGTTATCCGCTCTCTTTCTTTGGTGTCCTCGTCTGTTCCATCGCTATTCTCAATCTTTTCACCCCATTTGACTCGCATGTTATATCTCGTTTGGGTTCCGTATATTCCCAAATCCTACCAGACATCCACAAATCATCATCATCCTCTGGCACTTGTGACTACTCCTATGGAAGATGGGTCCGAGACAAGAATCATGCACTTCAGTTGTACAGTGAGAGCTGCCCGTTTCTCGATCCTGGCTTTCGGTGCAGCCAGAGTGGTCGGAAAGACGAAGATTATCGTCAATGGCGATGGCAACCGGCCGGCTGTGATCTTTTGAGGTTTAACGCAAGCGACTTCTTGGAGAGAAGTCGAAATGGACGAATAGTGTTTGCTGGCGACTCGATCGGAAGGAACCAGTGGGAATCTTTGCTGTGCATGCTTGCAGAAGCAGTATCCAACAAGTCTAGAATCTATGAAGTAAATGGGAACCCCATTACAAAACACACAGGTTTTCTATCAATGCGATTCCAGGACTACAACCTCACAGTTGAATATTACAGGGCACCCTTCCTTGTGGTCGTAGGGCACCCAACACAAAATGCATCAAGCCAAGTCAGGATCACAGTTAAGGTCGACCAATTCCACTGGTTTTCCAAACATTGGGTTGGAGCAGATGTTCTGATTTTCAGTGCAGGGCACTGGTGGAACGAGGATAAAACAAGGTCACTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

263

Amino Acids

30.33

Weight (kDa)

8.72

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	76 - 129	6.5e-19	PMR5 N terminal Domain
PC-Esterase	PF13839	132 - 259	2.6e-41	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11570 AT5G06230 AT5G06230 AT5G06230
fragaria_vesca	FvH4_6g19550 FvH4_6g19550 FvH4_6g19550 FvH4_6g19550
malus_domestica	MD12G1031900.v1.1 MD14G1032200.v1.1
prunus_persica	Prupe.7G100700_v2.0.a1
pyrus_communis	pycom12g02960
rosa_chinensis	RchiOBHm_Chr3g0474891
rosa_laevigata	RLG00000023883
rosa_multiflora	Rmu_sc0008866.1_g000002
rosa_roxburghii	Rroxscaffold_6G00406760
rosa_rugosa	Rorug03G0145200
rosa_samantha	Rh3AG194800 Rh3BG224700 Rh3CG219700 Rh3DG220300
rosa_wichuraiana	Rw3G017730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	619, 642
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	3 cut(s)	12, 302, 683
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	717
AgsI	TTSAA	2 cut(s)	11, 608
AjnI	CCWGG	2 cut(s)	310, 585
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	1 cut(s)	294
AluI	AGCT	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	63, 252
AlwI	GGATC	3 cut(s)	12, 302, 683
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	294, 324
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	253
BaeGI	GKGCMC	3 cut(s)	622, 645, 756
BanI	GGYRCC	2 cut(s)	619, 642
BbvI	GCAGC	2 cut(s)	281, 336
BccI	CCATC	3 cut(s)	122, 243, 360
BciT130I	CCWGG	2 cut(s)	312, 587
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	63, 252
BfaI	CTAG	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	2 cut(s)	295, 325
BlsI	GCNGC	2 cut(s)	296, 326
Bme1390I	CCNGG	2 cut(s)	312, 587
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	6 cut(s)	172, 254, 470, 545, 621, 644
BmrFI	CCNGG	2 cut(s)	312, 587
BmsI	GCATC	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse118I	RCCGGY	2 cut(s)	373, 377
Bse1I	ACTGG	3 cut(s)	472, 707, 761
BseBI	CCWGG	2 cut(s)	312, 587
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	198, 215
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	3 cut(s)	472, 707, 761
BseSI	GKGCMC	3 cut(s)	622, 645, 756
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	281, 336
BsgI	GTGCAG	2 cut(s)	343, 768
Bsh1285I	CGRYCG	2 cut(s)	378, 462
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	2 cut(s)	619, 642
BsiEI	CGRYCG	2 cut(s)	378, 462
BsiSI	CCGG	2 cut(s)	374, 378
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	2 cut(s)	63, 252
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	622, 645, 756
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	4, 307, 385, 459, 675
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	6 cut(s)	172, 254, 470, 545, 621, 644
BspPI	GGATC	3 cut(s)	12, 302, 683
BspT107I	GGYRCC	2 cut(s)	619, 642
BspTNI	GGTCTC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	85
BsrFI	RCCGGY	2 cut(s)	373, 377
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	472, 707, 761
BssAI	RCCGGY	2 cut(s)	373, 377
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	5 cut(s)	4, 307, 385, 459, 675
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	2 cut(s)	312, 587
Bst4CI	ACNGT	3 cut(s)	287, 604, 682
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	5 cut(s)	379, 406, 451, 494, 498
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	198, 215
BstKTI	GATC	5 cut(s)	7, 310, 388, 462, 678
BstMAI	GTCTC	2 cut(s)	63, 252
BstMBI	GATC	5 cut(s)	4, 307, 385, 459, 675
BstMCI	CGRYCG	2 cut(s)	378, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 493
BstNI	CCWGG	2 cut(s)	312, 587
BstNSI	RCATGY	2 cut(s)	155, 496
BstSCI	CCNGG	2 cut(s)	310, 585
BstSLI	GKGCMC	3 cut(s)	622, 645, 756
BstV1I	GCAGC	2 cut(s)	281, 336
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	377
BtgZI	GCGATG	2 cut(s)	100, 379
BtsCI	GGATG	2 cut(s)	198, 215
BtsIMutI	CAGTG	5 cut(s)	292, 479, 700, 751, 754
Cac8I	GCNNGC	5 cut(s)	379, 406, 451, 494, 498
Cfr10I	RCCGGY	2 cut(s)	373, 377
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	3 cut(s)	152, 269, 493
CviJI	RGCY	7 cut(s)	34, 294, 315, 327, 377, 381, 666
CviKI_1	RGCY	7 cut(s)	34, 294, 315, 327, 377, 381, 666
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	5 cut(s)	6, 309, 387, 461, 677
DpnII	GATC	5 cut(s)	4, 307, 385, 459, 675
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EclXI	CGGCCG	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	260
EcoRII	CCWGG	2 cut(s)	310, 585
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	661
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	3 cut(s)	155, 272, 496
FaiI	YATR	7 cut(s)	153, 158, 178, 243, 270, 494, 531
FatI	CATG	3 cut(s)	151, 268, 492
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	2 cut(s)	295, 325
FokI	GGATG	2 cut(s)	185, 202
Fsp4HI	GCNGC	2 cut(s)	295, 325
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	295, 325
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	374, 378
Hin1II	CATG	3 cut(s)	155, 272, 496
HincII	GTYRAC	1 cut(s)	691
HindII	GTYRAC	1 cut(s)	691
HinfI	GANTC	7 cut(s)	23, 146, 265, 455, 479, 525, 582
HpaII	CCGG	2 cut(s)	374, 378
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	691
Hpy188I	TCNGA	5 cut(s)	30, 257, 339, 464, 738
Hpy188III	TCNNGA	3 cut(s)	305, 522, 673
Hpy8I	GTNNAC	1 cut(s)	691
HpyAV	CCTTC	3 cut(s)	83, 459, 634
HpyCH4III	ACNGT	3 cut(s)	287, 604, 682
HpyCH4V	TGCA	6 cut(s)	272, 324, 492, 500, 659, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 493
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	155, 272, 496
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Kzo9I	GATC	5 cut(s)	4, 307, 385, 459, 675
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	2 cut(s)	281, 336
LweI	GCATC	1 cut(s)	668
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	230, 780
MalI	GATC	5 cut(s)	6, 309, 387, 461, 677
MbiI	CCGCTC	1 cut(s)	85
MboI	GATC	5 cut(s)	4, 307, 385, 459, 675
MboII	GAAGA	3 cut(s)	78, 258, 359
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	622, 645, 756
MluCI	AATT	1 cut(s)	695
MlyI	GAGTC	2 cut(s)	140, 449
MmeI	TCCRAC	3 cut(s)	317, 537, 703
MnlI	CCTC	6 cut(s)	25, 113, 229, 387, 608, 760
Mph1103I	ATGCAT	1 cut(s)	661
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	2 cut(s)	399, 684
MspI	CCGG	2 cut(s)	374, 378
MspR9I	CCNGG	2 cut(s)	312, 587
MvaI	CCWGG	2 cut(s)	312, 587
MwoI	GCNNNNNNNGC	2 cut(s)	321, 493
NaeI	GCCGGC	1 cut(s)	379
NdeII	GATC	5 cut(s)	4, 307, 385, 459, 675
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	3 cut(s)	155, 272, 496
NlaIV	GGNNCC	6 cut(s)	172, 254, 470, 545, 621, 644
NmuCI	GTSAC	2 cut(s)	230, 780
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	2 cut(s)	155, 496
PaeI	GCATGC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	2 cut(s)	361, 433
PdiI	GCCGGC	1 cut(s)	379
PfeI	GAWTC	5 cut(s)	23, 265, 479, 525, 582
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	296, 326
Ple19I	CGATCG	1 cut(s)	462
PleI	GAGTC	2 cut(s)	140, 449
PpsI	GAGTC	2 cut(s)	140, 449
Psp6I	CCWGG	2 cut(s)	310, 585
PspGI	CCWGG	2 cut(s)	310, 585
PspN4I	GGNNCC	6 cut(s)	172, 254, 470, 545, 621, 644
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	462
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	399, 684
SatI	GCNGC	2 cut(s)	295, 325
Sau3AI	GATC	5 cut(s)	4, 307, 385, 459, 675
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	140, 449
ScrFI	CCNGG	2 cut(s)	312, 587
SduI	GDGCHC	3 cut(s)	622, 645, 756
SetI	ASST	8 cut(s)	43, 75, 296, 398, 568, 600, 690, 782
SfaNI	GCATC	1 cut(s)	668
SinI	GGWCC	1 cut(s)	253
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	1 cut(s)	695
SsiI	CCGC	1 cut(s)	83
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	310, 585
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	3 cut(s)	287, 604, 682
TaqI	TCGA	4 cut(s)	306, 427, 458, 690
TasI	AATT	1 cut(s)	695
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	5 cut(s)	23, 265, 479, 525, 582
Tru1I	TTAA	2 cut(s)	399, 684
Tru9I	TTAA	2 cut(s)	399, 684
TscAI	CASTG	5 cut(s)	292, 479, 707, 751, 761
TseFI	GTSAC	2 cut(s)	230, 780
TseI	GCWGC	2 cut(s)	294, 324
Tsp45I	GTSAC	2 cut(s)	230, 780
TspDTI	ATGAA	2 cut(s)	36, 546
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	5 cut(s)	292, 479, 707, 751, 761
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	521
XceI	RCATGY	2 cut(s)	155, 496
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.