Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007298

Physical Location & Seq

Genomic Coordinates Forward (+)

23650074 .. 23651609

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGACCACATACGCAGCTCCCGGTACCACAGTGCAGACGACCCCATTGGTGCACGTTGGGGATGAGGGACTGAGAAGAACGAAGATGAGGGTGATGGTCGCCATCGACGAAAGCGACTCGAGCTTCTACGCGCTCAACTGGGCGCTTGACCACCTCTTTATCAACGCGCCGAGTACTCTGGAAGGCGGCGAGGGGGAAGGGGGGATGGTGACGGTGGTCCACGTCACGCAGCCGTTTCAGCACTTTGTGTACCCTGCCGGACCTGCCGGAGCAACCTATTATGCATCCGCGTCGGTGGTGGAGTCGGTGAAGAAAGCTCAGCAGGAGAATTCTGCTGCCATTCTCTCCCGCGCTATGCAGATTTGCAAGGATAGGATGATCAAAGCAGAAACTCTGACTCTGACTGGAGATCCAAAGGACATGATTTGTCAAGCCACAGAGCAGATGCATGTAGATCTTCTTGTTGTGGGTAGTCGTGGCCTGGGCATGGTCAAGAGAGCATTCCTAGGAAGTGTGAGCGACTACTGCGCACATCATGCATCATGTCCAGTCATGATTGTAAAGCCACCAAGGGGGTCTGGAGCAAAGGGGTCTGCATCATCTAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008144 GO:0016020 GO:0016208 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

204

Amino Acids

21.76

Weight (kDa)

7.05

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	31 - 189	1.5e-29	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11930 AT3G11930 AT3G11930 AT3G11930 AT3G58450 AT3G58450
fragaria_vesca	FvH4_6g21250
malus_domestica	MD14G1047700.v1.1 MD14G1047900.v1.1
prunus_persica	Prupe.7G087200_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087300_v2.0.a1 Prupe.7G087400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0477711
rosa_laevigata	RLG00000023696
rosa_multiflora	Rmu_co8357573.1_g000001 Rmu_sc0019064.1_g000001 Rmu_sc0019065.1_g000002
rosa_roxburghii	Rroxscaffold_6G00403730
rosa_rugosa	Rorug03G0162900
rosa_samantha	Rh3AG213100 Rh3BG246800 Rh3CG240600 Rh3DG239900
rosa_wichuraiana	Rw3G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	274
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AccII	CGCG	4 cut(s)	134, 170, 293, 354
AciI	CCGC	3 cut(s)	189, 291, 352
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	1 cut(s)	331
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	3 cut(s)	28, 178, 254
AfiI	CCNNNNNNNGG	2 cut(s)	490, 575
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	483
AluBI	AGCT	3 cut(s)	20, 126, 320
AluI	AGCT	3 cut(s)	20, 126, 320
Alw21I	GWGCWC	1 cut(s)	57
Alw44I	GTGCAC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	481
ApaLI	GTGCAC	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	17, 232, 338
ApoI	RAATTY	1 cut(s)	331
Asp718I	GGTACC	1 cut(s)	26
AspA2I	CCTAGG	1 cut(s)	508
AspLEI	GCGC	5 cut(s)	136, 148, 172, 356, 533
AspS9I	GGNCC	2 cut(s)	220, 263
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	106, 223, 322
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	220, 263
AvrII	CCTAGG	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	57
BaeI	ACNNNNGTAYC	2 cut(s)	18, 51
BanI	GGYRCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	29, 244, 325
BccI	CCATC	3 cut(s)	91, 113, 202
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	1 cut(s)	485
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	274
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	4 cut(s)	18, 190, 233, 339
BlnI	CCTAGG	1 cut(s)	508
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	4 cut(s)	19, 191, 234, 340
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	24, 485
Bme18I	GGWCC	2 cut(s)	220, 263
BmeT110I	CYCGRG	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	220, 263
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	24, 485
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	4 cut(s)	296, 438, 551, 608
BmuI	ACTGGG	1 cut(s)	151
BoxI	GACNNNNGTC	1 cut(s)	218
BpmI	CTGGAG	2 cut(s)	429, 603
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	484, 508, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 575
Bse1I	ACTGG	3 cut(s)	146, 412, 551
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	484, 508, 572
BseGI	GGATG	4 cut(s)	70, 213, 287, 384
BseLI	CCNNNNNNNGG	2 cut(s)	490, 575
BseMII	CTCAG	2 cut(s)	65, 335
BseNI	ACTGG	3 cut(s)	146, 412, 551
BseSI	GKGCMC	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	29, 244, 325
BsgI	GTGCAG	1 cut(s)	56
Bsh1236I	CGCG	4 cut(s)	134, 170, 293, 354
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	3 cut(s)	24, 261, 270
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	490, 575
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	381, 412, 457
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	3 cut(s)	189, 291, 352
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	66, 334
BspFNI	CGCG	4 cut(s)	134, 170, 293, 354
BspHI	TCATGA	1 cut(s)	555
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	26
BsrI	ACTGG	3 cut(s)	146, 412, 551
BssECI	CCNNGG	3 cut(s)	484, 508, 572
BssMI	GATC	3 cut(s)	381, 412, 457
BssT1I	CCWWGG	2 cut(s)	508, 572
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	2 cut(s)	34, 217
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	74, 321
BstF5I	GGATG	4 cut(s)	70, 213, 287, 384
BstFNI	CGCG	4 cut(s)	134, 170, 293, 354
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	5 cut(s)	136, 148, 172, 356, 533
BstKTI	GATC	3 cut(s)	384, 415, 460
BstMBI	GATC	3 cut(s)	381, 412, 457
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 241, 266, 528, 539
BstNI	CCWGG	1 cut(s)	485
BstNSI	RCATGY	1 cut(s)	455
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	22, 483
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	4 cut(s)	134, 170, 293, 354
BstV1I	GCAGC	3 cut(s)	29, 244, 325
BstX2I	RGATCY	2 cut(s)	412, 457
BstYI	RGATCY	2 cut(s)	412, 457
BsuRI	GGCC	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	4 cut(s)	70, 213, 287, 384
BtsIMutI	CAGTG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	274
CciI	TCATGA	1 cut(s)	555
CfoI	GCGC	5 cut(s)	136, 148, 172, 356, 533
Cfr13I	GGNCC	2 cut(s)	220, 263
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	27, 177, 253
CviAII	CATG	6 cut(s)	424, 452, 490, 539, 546, 556
CviJI	RGCY	7 cut(s)	20, 126, 235, 320, 437, 483, 568
CviKI_1	RGCY	7 cut(s)	20, 126, 235, 320, 437, 483, 568
CviQI	GTAC	3 cut(s)	27, 177, 253
DdeI	CTNAG	2 cut(s)	74, 321
DpnI	GATC	3 cut(s)	383, 414, 459
DpnII	GATC	3 cut(s)	381, 412, 457
DraIII	CACNNNGTG	1 cut(s)	250
Eco130I	CCWWGG	2 cut(s)	508, 572
Eco47I	GGWCC	2 cut(s)	220, 263
Eco88I	CYCGRG	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	2 cut(s)	508, 572
EcoT22I	ATGCAT	3 cut(s)	289, 453, 544
ErhI	CCWWGG	2 cut(s)	508, 572
FaeI	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
FaiI	YATR	9 cut(s)	13, 285, 359, 425, 453, 491, 540, 547, 557
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	6 cut(s)	423, 451, 489, 538, 545, 555
FauI	CCCGC	1 cut(s)	359
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	18, 190, 233, 339
FokI	GGATG	4 cut(s)	77, 220, 274, 391
Fsp4HI	GCNGC	4 cut(s)	18, 190, 233, 339
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	532
GlaI	GCGC	5 cut(s)	135, 147, 171, 355, 532
GluI	GCNGC	4 cut(s)	18, 190, 233, 339
GsuI	CTGGAG	2 cut(s)	429, 603
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	3 cut(s)	24, 261, 270
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	5 cut(s)	136, 148, 172, 356, 533
Hin1II	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
Hin6I	GCGC	5 cut(s)	134, 146, 170, 354, 531
HinP1I	GCGC	5 cut(s)	134, 146, 170, 354, 531
HinfI	GANTC	3 cut(s)	119, 305, 400
HpaII	CCGG	3 cut(s)	24, 261, 270
HphI	GGTGA	3 cut(s)	106, 223, 322
Hpy166II	GTNNAC	3 cut(s)	55, 223, 253
Hpy188I	TCNGA	2 cut(s)	399, 405
Hpy188III	TCNNGA	4 cut(s)	182, 496, 556, 582
Hpy8I	GTNNAC	3 cut(s)	55, 223, 253
Hpy99I	CGWCG	2 cut(s)	113, 298
HpyAV	CCTTC	2 cut(s)	179, 194
HpyCH4III	ACNGT	2 cut(s)	34, 217
HpyCH4IV	ACGT	2 cut(s)	57, 225
HpyCH4V	TGCA	8 cut(s)	37, 55, 287, 361, 369, 451, 542, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 241, 266, 528, 539
HpyF3I	CTNAG	2 cut(s)	74, 321
HpySE526I	ACGT	2 cut(s)	57, 225
Hsp92II	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
HspAI	GCGC	5 cut(s)	134, 146, 170, 354, 531
KpnI	GGTACC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	381, 412, 457
LmnI	GCTCC	3 cut(s)	25, 272, 584
Lsp1109I	GCAGC	3 cut(s)	29, 244, 325
LweI	GCATC	4 cut(s)	296, 438, 551, 608
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	2 cut(s)	57, 225
MaeIII	GTNAC	2 cut(s)	211, 226
MalI	GATC	3 cut(s)	383, 414, 459
MboI	GATC	3 cut(s)	381, 412, 457
MboII	GAAGA	4 cut(s)	90, 97, 325, 452
MflI	RGATCY	2 cut(s)	412, 457
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	1 cut(s)	331
MlyI	GAGTC	3 cut(s)	113, 314, 394
MnlI	CCTC	4 cut(s)	61, 84, 167, 187
Mph1103I	ATGCAT	3 cut(s)	289, 453, 544
MspI	CCGG	3 cut(s)	24, 261, 270
MspR9I	CCNGG	2 cut(s)	24, 485
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	4 cut(s)	134, 170, 293, 354
MwoI	GCNNNNNNNGC	5 cut(s)	123, 241, 266, 528, 539
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	381, 412, 457
NlaIII	CATG	6 cut(s)	427, 455, 493, 542, 549, 559
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	2 cut(s)	211, 226
NsbI	TGCGCA	1 cut(s)	532
NsiI	ATGCAT	3 cut(s)	289, 453, 544
NspI	RCATGY	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	121
PagI	TCATGA	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 114
PctI	GAATGC	1 cut(s)	503
PkrI	GCNGC	4 cut(s)	19, 191, 234, 340
PleI	GAGTC	3 cut(s)	113, 313, 394
PpsI	GAGTC	3 cut(s)	113, 313, 394
PshAI	GACNNNNGTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	220, 263
PspXI	VCTCGAGB	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	412, 457
RsaI	GTAC	3 cut(s)	28, 178, 254
RsaNI	GTAC	3 cut(s)	27, 177, 253
SatI	GCNGC	4 cut(s)	18, 190, 233, 339
Sau3AI	GATC	3 cut(s)	381, 412, 457
Sau96I	GGNCC	2 cut(s)	220, 263
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	3 cut(s)	113, 314, 394
ScrFI	CCNGG	2 cut(s)	24, 485
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	22, 60, 128, 159, 228, 268, 281, 322
SfaNI	GCATC	4 cut(s)	296, 438, 551, 608
Sfr274I	CTCGAG	1 cut(s)	121
SinI	GGWCC	2 cut(s)	220, 263
SlaI	CTCGAG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	189, 291, 352
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	2 cut(s)	22, 483
StyI	CCWWGG	2 cut(s)	508, 572
TaaI	ACNGT	2 cut(s)	34, 217
TaiI	ACGT	2 cut(s)	60, 228
TaqI	TCGA	2 cut(s)	108, 122
TasI	AATT	1 cut(s)	331
TatI	WGTACW	1 cut(s)	176
TauI	GCSGC	1 cut(s)	192
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	211, 226
TseI	GCWGC	3 cut(s)	17, 232, 338
Tsp45I	GTSAC	2 cut(s)	211, 226
TspRI	CASTG	1 cut(s)	39
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	220, 263
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	455
XhoI	CTCGAG	1 cut(s)	121
XmaJI	CCTAGG	1 cut(s)	508
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	178
Zsp2I	ATGCAT	3 cut(s)	289, 453, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.