Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012561

Physical Location & Seq

Genomic Coordinates Forward (+)

25416390 .. 25417824

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGCGAAAACCCTTGTCTAGGCTCGCTCGCCGCAGTCGAACCCAAATTCATGGCGATTCAAAGACGGACCGATGTGGCGCTCTTTTGATTACGTCCGCAGATGCTTTCGATGTGCCAGTTGAGACATCTCCTGCTTCCGTTCCCGTGCTGATAGTTGCAGTTGTGACTGGATGCCGAAACCTTCTGGTTTCAGAATCAACACCAAAGCACCTTGAGCAGAAAACCCATATGGGTAATCATGTAGACATGCTCGAACTCAACTCTCAACTGAAGCAGCTAGTCAAAATTTGTAATGTTAAAGACGCCCGGAAGATGTTCGATAAAAGGCCTAAGCAAGATGCGGTTTCATGGACCAGTATGATTTCAGGCTATGCTAGAGTCTCTGATTCCTCTAAAGCATTAGCTCTGTTCTCTAACATGTGGGTACAGCCACAAGTGTTTACTCGTGTATCAAGTGTTTGTGGAACCATGCACTCTACATGTTACTCGCCAAGTTTGTGTGGGAAAAGAAGAGAATACCATGCACTCTATATGTTTGATAAAATGCTGCAATCAGATGGGATGTGTAATGTAGGAAGGACCATTATTGCTCCTATGAGCATTCGAGACAAAGGGGGAGGACTCGCTACTCATCGTGACATTGTTGATGCTTCTAACTGCATTAGAGACAACGAGGCATTAGCGCGCTGTTGCTTTGGAAAAATCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

237

Amino Acids

26.26

Weight (kDa)

9.46

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12840
malus_domestica	MD15G1256900.v1.1
rosa_chinensis	RchiOBHm_Chr3g0479601 RchiOBHm_Chr7g0193871
rosa_multiflora	Rmu_sc0002389.1_g000026 Rmu_sc0002389.1_g000027 Rmu_sc0002571.1_g000011 Rmu_sc0003303.1_g000014 Rmu_sc0029350.1_g000001
rosa_roxburghii	Rroxscaffold_4G00313860
rosa_rugosa	Rorug02G0091200
rosa_samantha	Rh2AG139700 Rh2BG142900 Rh2CG148000 Rh5AG043500 Rh5CG049200 Rh7BG234300 Rh7CG299600 Rh7DG358800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	688
AciI	CCGC	3 cut(s)	34, 99, 344
AcsI	RAATTY	2 cut(s)	48, 288
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	2 cut(s)	420, 482
AgsI	TTSAA	1 cut(s)	63
AluBI	AGCT	2 cut(s)	280, 407
AluI	AGCT	2 cut(s)	280, 407
Alw26I	GTCTC	4 cut(s)	119, 388, 603, 663
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	2 cut(s)	277, 550
ApoI	RAATTY	2 cut(s)	48, 288
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	3 cut(s)	83, 688, 690
AspS9I	GGNCC	3 cut(s)	70, 354, 582
AsuC2I	CCSGG	1 cut(s)	310
AvaII	GGWCC	3 cut(s)	70, 354, 582
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BauI	CACGAG	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	289, 537
BccI	CCATC	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	4 cut(s)	119, 388, 603, 663
BfaI	CTAG	3 cut(s)	21, 281, 378
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	3 cut(s)	34, 278, 551
BlsI	GCNGC	3 cut(s)	35, 279, 552
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	3 cut(s)	70, 354, 582
BmgT120I	GGNCC	3 cut(s)	70, 354, 582
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	4 cut(s)	94, 164, 331, 640
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	3 cut(s)	119, 175, 357
BseGI	GGATG	2 cut(s)	179, 570
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseNI	ACTGG	3 cut(s)	119, 175, 357
BsePI	GCGCGC	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	289, 537
Bsh1236I	CGCG	1 cut(s)	688
BshFI	GGCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	4 cut(s)	119, 388, 603, 663
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	1 cut(s)	331
BspACI	CCGC	3 cut(s)	34, 99, 344
BspANI	GGCC	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	469
BsrI	ACTGG	3 cut(s)	119, 175, 357
BssHII	GCGCGC	1 cut(s)	686
BssNI	GRCGYC	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	447
Bst2BI	CACGAG	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	27, 31, 688
BstDEI	CTNAG	1 cut(s)	333
BstENI	CCTNNNNNAGG	1 cut(s)	19
BstF5I	GGATG	2 cut(s)	179, 570
BstFNI	CGCG	1 cut(s)	688
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	3 cut(s)	83, 688, 690
BstMAI	GTCTC	4 cut(s)	119, 388, 603, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	3 cut(s)	253, 424, 486
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	688
BstV1I	GCAGC	2 cut(s)	289, 537
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	179, 570
Cac8I	GCNNGC	3 cut(s)	27, 31, 688
CfoI	GCGC	3 cut(s)	83, 688, 690
Cfr13I	GGNCC	3 cut(s)	70, 354, 582
CpoI	CGGWCCG	1 cut(s)	70
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	428
CspI	CGGWCCG	1 cut(s)	70
CviAII	CATG	8 cut(s)	53, 242, 250, 351, 421, 472, 483, 524
CviJI	RGCY	6 cut(s)	25, 280, 331, 372, 407, 433
CviKI_1	RGCY	6 cut(s)	25, 280, 331, 372, 407, 433
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	331
Eco47I	GGWCC	3 cut(s)	70, 354, 582
Eco57I	CTGAAG	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	19
FaeI	CATG	8 cut(s)	56, 245, 253, 354, 424, 475, 486, 527
FatI	CATG	8 cut(s)	52, 241, 249, 350, 420, 471, 482, 523
FauNDI	CATATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	34, 278, 551
FokI	GGATG	2 cut(s)	186, 577
Fsp4HI	GCNGC	3 cut(s)	34, 278, 551
FspBI	CTAG	3 cut(s)	21, 281, 378
GlaI	GCGC	3 cut(s)	82, 687, 689
GluI	GCNGC	3 cut(s)	34, 278, 551
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	3 cut(s)	83, 688, 690
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	8 cut(s)	56, 245, 253, 354, 424, 475, 486, 527
Hin6I	GCGC	3 cut(s)	81, 686, 688
HinP1I	GCGC	3 cut(s)	81, 686, 688
HinfI	GANTC	5 cut(s)	59, 197, 381, 389, 624
HpaII	CCGG	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	247, 444
Hpy188I	TCNGA	3 cut(s)	196, 388, 559
Hpy188III	TCNNGA	2 cut(s)	608, 638
Hpy8I	GTNNAC	2 cut(s)	247, 444
HpyAV	CCTTC	2 cut(s)	194, 573
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	5 cut(s)	161, 475, 527, 553, 663
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	8 cut(s)	56, 245, 253, 354, 424, 475, 486, 527
HspAI	GCGC	3 cut(s)	81, 686, 688
LmnI	GCTCC	1 cut(s)	598
LpnPI	CCDG	7 cut(s)	132, 147, 156, 173, 323, 354, 370
Lsp1109I	GCAGC	2 cut(s)	289, 537
LweI	GCATC	4 cut(s)	94, 164, 331, 640
MaeI	CTAG	3 cut(s)	21, 281, 378
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	3 cut(s)	166, 485, 638
MboII	GAAGA	2 cut(s)	325, 525
MluCI	AATT	2 cut(s)	48, 288
MlyI	GAGTC	2 cut(s)	390, 618
MnlI	CCTC	3 cut(s)	403, 614, 670
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	603
MvnI	CGCG	1 cut(s)	688
MwoI	GCNNNNNNNGC	1 cut(s)	217
NciI	CCSGG	1 cut(s)	310
NdeI	CATATG	1 cut(s)	231
NlaIII	CATG	8 cut(s)	56, 245, 253, 354, 424, 475, 486, 527
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	166, 638
NspI	RCATGY	3 cut(s)	253, 424, 486
PauI	GCGCGC	1 cut(s)	686
PceI	AGGCCT	1 cut(s)	331
PciI	ACATGT	2 cut(s)	420, 482
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PctI	GAATGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	59, 197, 389
PkrI	GCNGC	3 cut(s)	35, 279, 552
PleI	GAGTC	2 cut(s)	389, 618
PpsI	GAGTC	2 cut(s)	389, 618
PscI	ACATGT	2 cut(s)	420, 482
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	70, 354, 582
PteI	GCGCGC	1 cut(s)	686
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
Rsr2I	CGGWCCG	1 cut(s)	70
RsrII	CGGWCCG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	34, 278, 551
Sau96I	GGNCC	3 cut(s)	70, 354, 582
SchI	GAGTC	2 cut(s)	390, 618
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	5 cut(s)	98, 186, 216, 282, 409
SfaNI	GCATC	4 cut(s)	94, 164, 331, 640
SinI	GGWCC	3 cut(s)	70, 354, 582
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	48, 288
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	3 cut(s)	34, 99, 344
SspMI	CTAG	3 cut(s)	21, 281, 378
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	308
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	5 cut(s)	40, 111, 255, 321, 607
TaqII	GACCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	48, 288
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	3 cut(s)	59, 197, 389
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	2 cut(s)	166, 638
TseI	GCWGC	2 cut(s)	277, 550
Tsp45I	GTSAC	2 cut(s)	166, 638
TspDTI	ATGAA	3 cut(s)	17, 41, 339
TspGWI	ACGGA	2 cut(s)	83, 130
VpaK11BI	GGWCC	3 cut(s)	70, 354, 582
XagI	CCTNNNNNAGG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	48, 288
XceI	RCATGY	3 cut(s)	253, 424, 486
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	3 cut(s)	21, 281, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.