Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006652

Physical Location & Seq

Genomic Coordinates Forward (+)

30712869 .. 30717761

Gene Structure 4893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGACGATGGAGGAGGAGGAGGAGAAGCTTCTCTCCTCTATAGCAGCTTCCGAGCCCCCCCAAAACGGCGAAGCAGCAGCCAGTACGACCGACTCCGACTCCGGTTCCGGTGACGATGCCGCCGCCGCCGCTCAAGGAGCCTCCTCCGCCGGAGTCGAATACCATATATCCGAAGAGCAAAAAGCGGCGCGAGAGCGACAGGAGAGAGCAATGCAGCAGCTCTTGATGAAGCGCCGCGCTTCCGCCCTCGCCGTCCCCACCAACGACAACGCCGTCAGGACTCGTCTCCGGCGCCTCGGCGAGCCCATGACTCTGTTCGGAGAGCGAGAGATGGAAAGGCGGGACCGGCTCAGGTCGATTCTGGCCAAGCTCGATTCGGCGCAGCTGGAGACGCTGATGAAGGCTCACGACGAGGACGAGGCTTCTGCTGCTGGTGCTCAAGGTGGAGACGATTCTGACTTCGATCAAGAAATTCAGTACCCCTTCTTCACTGAAGCGACCAGGCCCAGAGCTTTGCGTGACGCTAGGGTTCATATTGCGCAGTACTCGCTTTCCCGGGCGGCGTTGCGGCTTCAACGCGCGAGGAGGAAGGAGGAGGATCCGGATGAGGATATGGATGCCGAAATCAACTGGGCTTTAGAGCAGGCCTCCAATTTGAAGCTTGATTGCAGTGAGATTGGGGATGATAGGCCACTTTCTGGTTGCTCATTCTCACAAGATGGCAAATTGCTTGCCGCCTGCGCTTTAAGTCCAGTTGCCAAGCTGTGGAGCATGCCTCAAGTAACAAAGGTTGCCACCTTGAAGGGACATACAGAGCGCTTAACTGATGTTGCATTTTCTCCTGTGCAAAATCATCTCTTGGCAACTGCGTCTGCGGATAGGACTGCGAGGTTGTGGAACAGCGAAGGAGCGCACCTAATGACATTCGGGGGACATTTGGACCGTCTTGCCCGCATTGCCTTCCATCCCTCAGGAAAGTACTTGGGTACAACTAGCTTTGACAAGACTTGGAGGCTGTGGGATGTAGAGACTGGTGAAGAGTTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTCTATGCTATAGACTTCCACCCAGATGGCTCATTGGTTGCAACTGCTGGATTGGATGCGCTTGCTCGTGTTTGGGACCTCCGTAGTGGTAGAAGTATTCTTACCTTGGAAGGCCATGTCAAAAAAGTTCTTGCACTCAGTTTTTCACCAAATGGTTATTATCTAGCCACTGGGGGTGAAGACAACACTTGTAGGATATGGGATTTAAGGAAAAAGAAATCCATATACATTATTCCAGCACACTCCAATCTCATATCACAGGTCAAATTTGAACCTCAAGAGGGATATTTCTTGGTAACTGGCTCCTATGATATGACAGCAAAGATATGGTCAGCCCGAGATTTTAAGCCTGTCAAGACGCTCTCTGGACACGAATCAAAAGTTACTTCCTTGGATGTTTCAGGAGATGGACATCACATTGCTACTGTATCACATGACCGAACTATCAAACTATGGTCGAGCGGTACCAATGAGAAGGACCAGGAAATGAATGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0001709 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007267 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0008380 GO:0009553 GO:0009560 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0017069 GO:0017070 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030312 GO:0030532 GO:0030621 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044703 GO:0045165 GO:0046483 GO:0046540 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0070013 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP4 WD40

Protein Analysis

523

Amino Acids

57.79

Weight (kDa)

5.48

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP4	PF08799	92 - 119	5e-11	pre-mRNA processing factor 4 (PRP4) like
Beta-prop_WDR3_2nd	PF25172	220 - 344	2.2e-11	WDR3 second beta-propeller domain
EIF3I	PF24805	227 - 302	9.3e-07	EIF3I
WD40_Gbeta	PF25391	227 - 349	1.6e-10	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	227 - 384	4.8e-23	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	229 - 393	7e-38	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	230 - 306	5.2e-08	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	230 - 348	2.6e-10	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	235 - 302	2.9e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	236 - 346	2.3e-19	THOC3 beta-propeller domain
WD40_Prp19	PF24814	241 - 458	2.6e-57	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	255 - 467	6.8e-11	WDR36/Utp21 first beta-propeller
WD40	PF00400	263 - 300	7.2e-08	WD domain, G-beta repeat
WDR55	PF24796	272 - 407	2.7e-11	WDR55
WD40_MABP1-WDR62_2nd	PF24782	283 - 384	2.1e-09	MABP1/WDR62 second WD40 domain
WD40_WDHD1_1st	PF24817	285 - 348	7.2e-07	WDHD1 first WD40 domain
WD40	PF00400	305 - 341	8.8e-06	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	307 - 509	6.5e-29	CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	308 - 389	1.9e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	316 - 451	8.8e-29	THOC3 beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	326 - 413	4.2e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR3_2nd	PF25172	330 - 425	2.3e-13	WDR3 second beta-propeller domain
WD40_Gbeta	PF25391	330 - 509	6.6e-32	G protein beta WD-40 repeat protein
Beta-prop_WDR3_1st	PF25173	339 - 510	1.8e-37	WDR3 first beta-propeller domain
WDR55	PF24796	348 - 462	1.4e-11	WDR55
EIF3I	PF24805	350 - 447	1.5e-11	EIF3I
WD40	PF00400	351 - 383	6e-08	WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd	PF25168	352 - 419	1.3e-06	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	352 - 515	9.6e-42	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	353 - 457	4.2e-10	Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st	PF24817	357 - 436	4e-13	WDHD1 first WD40 domain
WD40_MABP1-WDR62_2nd	PF24782	357 - 467	4.4e-08	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	358 - 516	8.3e-23	Echinoderm microtubule-associated protein second beta-propeller
ANAPC4_WD40	PF12894	381 - 448	9.8e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40	PF00400	388 - 425	1.7e-11	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	391 - 513	4.6e-14	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	392 - 453	3.2e-09	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	393 - 513	1.8e-12	MABP1/WDR62 first WD40 domain
Beta-prop_EIPR1	PF23609	396 - 467	4.6e-06	EIPR1 beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	412 - 496	8.4e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	414 - 510	5.3e-07	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	431 - 520	2.1e-15	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	435 - 511	4.8e-15	WDR3 second beta-propeller domain
EIF3I	PF24805	437 - 516	2e-08	EIF3I
WD40_Prp19	PF24814	442 - 510	8.2e-12	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	445 - 520	3.3e-10	WDHD1 first WD40 domain
WD40	PF00400	473 - 510	1.3e-10	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05720 AT2G41500 AT2G41500
fragaria_vesca	FvH4_6g24750
malus_domestica	MD12G1086300.v1.1 MD14G1080500.v1.1
prunus_persica	Prupe.7G050300_v2.0.a1 Prupe.7G050300_v2.0.a1
pyrus_communis	pycom06g09480 pycom12g07290
rosa_chinensis	RchiOBHm_Chr3g0484331 RchiOBHm_Chr3g0484401 RchiOBHm_Chr3g0484501
rosa_laevigata	RLG00000023231
rosa_multiflora	Rmu_co8232775.1_g000001 Rmu_sc0000295.1_g000017 Rmu_sc0000295.1_g000018 Rmu_sc0001947.1_g000006
rosa_roxburghii	Rroxscaffold_6G00397770
rosa_rugosa	Rorug03G0210900
rosa_samantha	Rh3AG260000 Rh3AG261700 Rh3BG296600 Rh3CG294200 Rh3DG290300
rosa_wichuraiana	Rw3G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
Acc16I	TGCGCA	1 cut(s)	540
Acc65I	GGTACC	1 cut(s)	1535
AccB1I	GGYRCC	2 cut(s)	291, 1535
AccB7I	CCANNNNNTGG	2 cut(s)	698, 765
AccBSI	CCGCTC	2 cut(s)	131, 1533
AccII	CGCG	4 cut(s)	190, 237, 579, 581
AccIII	TCCGGA	1 cut(s)	601
AclWI	GGATC	2 cut(s)	593, 606
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	471, 1337
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	6 cut(s)	85, 479, 545, 980, 988, 1537
AfeI	AGCGCT	1 cut(s)	818
AfiI	CCNNNNNNNGG	4 cut(s)	65, 698, 765, 1352
AgsI	TTSAA	5 cut(s)	575, 658, 802, 1052, 1343
AjnI	CCWGG	2 cut(s)	500, 1551
AluBI	AGCT	9 cut(s)	28, 47, 220, 370, 385, 512, 661, 763, 996
AluI	AGCT	9 cut(s)	28, 47, 220, 370, 385, 512, 661, 763, 996
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	4 cut(s)	290, 383, 441, 1022
AlwI	GGATC	2 cut(s)	593, 606
Ama87I	CYCGRG	2 cut(s)	555, 1407
Aor13HI	TCCGGA	1 cut(s)	601
Aor51HI	AGCGCT	1 cut(s)	818
AoxI	GGCC	5 cut(s)	363, 503, 645, 689, 1183
ApeKI	GCWGC	7 cut(s)	44, 74, 77, 214, 217, 382, 428
ApoI	RAATTY	2 cut(s)	471, 1337
ArsI	GACNNNNNNTTYG	2 cut(s)	1385, 1417
Asp718I	GGTACC	1 cut(s)	1535
AspS9I	GGNCC	5 cut(s)	343, 504, 940, 1147, 1549
AsuC2I	CCSGG	2 cut(s)	556, 557
AsuHPI	GGTGA	4 cut(s)	122, 1046, 1209, 1259
AvaI	CYCGRG	2 cut(s)	555, 1407
AvaII	GGWCC	4 cut(s)	343, 940, 1147, 1549
AxyI	CCTNAGG	1 cut(s)	970
BalI	TGGCCA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	598
BanI	GGYRCC	2 cut(s)	291, 1535
BanII	GRGCYC	2 cut(s)	57, 306
BarI	GAAGNNNNNNTAC	4 cut(s)	470, 502, 1156, 1188
BauI	CACGAG	1 cut(s)	1137
BbsI	GAAGAC	1 cut(s)	1257
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	7 cut(s)	56, 86, 89, 226, 229, 394, 415
BccI	CCATC	5 cut(s)	325, 713, 972, 1091, 1472
BceAI	ACGGC	3 cut(s)	82, 236, 257
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	502, 1553
BcnI	CCSGG	2 cut(s)	556, 557
BcoDI	GTCTC	4 cut(s)	290, 383, 441, 1022
BfaI	CTAG	3 cut(s)	525, 993, 1235
BfmI	CTRYAG	2 cut(s)	39, 1080
BfoI	RGCGCY	3 cut(s)	235, 295, 820
BmcAI	AGTACT	2 cut(s)	545, 980
Bme1390I	CCNGG	4 cut(s)	502, 556, 557, 1553
Bme18I	GGWCC	4 cut(s)	343, 940, 1147, 1549
BmeT110I	CYCGRG	2 cut(s)	555, 1407
BmgT120I	GGNCC	5 cut(s)	343, 504, 940, 1147, 1549
BmiI	GGNNCC	8 cut(s)	106, 139, 293, 344, 600, 1148, 1375, 1537
BmrFI	CCNGG	4 cut(s)	502, 556, 557, 1553
BmrI	ACTGGG	2 cut(s)	640, 1251
BmsI	GCATC	3 cut(s)	106, 607, 1117
BmuI	ACTGGG	2 cut(s)	640, 1251
BpiI	GAAGAC	1 cut(s)	1257
BplI	GAGNNNNNCTC	4 cut(s)	632, 664, 760, 792
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	350
BpuEI	CTTGAG	4 cut(s)	117, 423, 762, 1332
BpuMI	CCSGG	2 cut(s)	556, 557
BsaBI	GATNNNNATC	1 cut(s)	1482
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	295, 555, 1176, 1461
BsaWI	WCCGGW	3 cut(s)	101, 107, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 698, 765, 1352
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	6 cut(s)	81, 635, 752, 1036, 1246, 1375
Bse21I	CCTNAGG	1 cut(s)	970
Bse3DI	GCAATG	3 cut(s)	216, 954, 1488
Bse8I	GATNNNNATC	1 cut(s)	1482
BseAI	TCCGGA	1 cut(s)	601
BseBI	CCWGG	2 cut(s)	502, 1553
BseDI	CCNNGG	4 cut(s)	295, 555, 1176, 1461
BseGI	GGATG	7 cut(s)	610, 622, 688, 964, 1027, 1132, 1471
BseJI	GATNNNNATC	1 cut(s)	1482
BseLI	CCNNNNNNNGG	4 cut(s)	65, 698, 765, 1352
BseMI	GCAATG	3 cut(s)	216, 954, 1488
BseMII	CTCAG	3 cut(s)	364, 984, 1222
BseNI	ACTGG	6 cut(s)	81, 635, 752, 1036, 1246, 1375
BseRI	GAGGAG	8 cut(s)	25, 26, 29, 32, 35, 133, 598, 608
BseXI	GCAGC	7 cut(s)	56, 86, 89, 226, 229, 394, 415
Bsh1236I	CGCG	4 cut(s)	190, 237, 579, 581
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	5 cut(s)	365, 505, 647, 691, 1185
BshNI	GGYRCC	2 cut(s)	291, 1535
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	2 cut(s)	555, 1407
BsiSI	CCGG	7 cut(s)	102, 108, 150, 289, 346, 556, 602
BslFI	GGGAC	5 cut(s)	239, 356, 819, 945, 1160
BslI	CCNNNNNNNGG	4 cut(s)	65, 698, 765, 1352
BsmAI	GTCTC	4 cut(s)	290, 383, 441, 1022
BsmBI	CGTCTC	3 cut(s)	290, 383, 441
BsmFI	GGGAC	5 cut(s)	239, 356, 819, 945, 1160
BsnI	GGCC	5 cut(s)	365, 505, 647, 691, 1185
BsoBI	CYCGRG	2 cut(s)	555, 1407
Bsp1286I	GDGCHC	3 cut(s)	57, 306, 439
Bsp13I	TCCGGA	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	463, 598
BspANI	GGCC	5 cut(s)	365, 505, 647, 691, 1185
BspCNI	CTCAG	3 cut(s)	363, 983, 1221
BspEI	TCCGGA	1 cut(s)	601
BspFNI	CGCG	4 cut(s)	190, 237, 579, 581
BspLI	GGNNCC	8 cut(s)	106, 139, 293, 344, 600, 1148, 1375, 1537
BspPI	GGATC	2 cut(s)	593, 606
BspQI	GCTCTTC	1 cut(s)	168
BspT107I	GGYRCC	2 cut(s)	291, 1535
BsrBI	CCGCTC	2 cut(s)	131, 1533
BsrDI	GCAATG	3 cut(s)	216, 954, 1488
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	6 cut(s)	81, 635, 752, 1036, 1246, 1375
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	4 cut(s)	295, 555, 1176, 1461
BssMI	GATC	2 cut(s)	463, 598
BssNI	GRCGYC	1 cut(s)	292
BssSI	CACGAG	1 cut(s)	1137
BssT1I	CCWWGG	2 cut(s)	1176, 1461
Bst2BI	CACGAG	1 cut(s)	1137
Bst2UI	CCWGG	2 cut(s)	502, 1553
Bst4CI	ACNGT	3 cut(s)	944, 1064, 1498
Bst6I	CTCTTC	2 cut(s)	168, 1032
BstACI	GRCGYC	1 cut(s)	292
BstC8I	GCNNGC	7 cut(s)	302, 645, 732, 739, 773, 952, 1134
BstDEI	CTNAG	3 cut(s)	350, 970, 1208
BstF5I	GGATG	7 cut(s)	610, 622, 688, 964, 1027, 1132, 1471
BstFNI	CGCG	4 cut(s)	190, 237, 579, 581
BstH2I	RGCGCY	3 cut(s)	235, 295, 820
BstKTI	GATC	2 cut(s)	466, 601
BstMAI	GTCTC	4 cut(s)	290, 383, 441, 1022
BstMBI	GATC	2 cut(s)	463, 598
BstMCI	CGRYCG	1 cut(s)	90
BstNI	CCWGG	2 cut(s)	502, 1553
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	4 cut(s)	500, 554, 555, 1551
BstSFI	CTRYAG	2 cut(s)	39, 1080
BstUI	CGCG	4 cut(s)	190, 237, 579, 581
BstV1I	GCAGC	7 cut(s)	56, 86, 89, 226, 229, 394, 415
BstV2I	GAAGAC	1 cut(s)	1257
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	1 cut(s)	1097
BstYI	RGATCY	1 cut(s)	598
Bsu36I	CCTNAGG	1 cut(s)	970
BsuRI	GGCC	5 cut(s)	365, 505, 647, 691, 1185
BtsCI	GGATG	7 cut(s)	610, 622, 688, 964, 1027, 1132, 1471
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	489, 676, 1239
Cac8I	GCNNGC	7 cut(s)	302, 645, 732, 739, 773, 952, 1134
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	5 cut(s)	343, 504, 940, 1147, 1549
Cfr9I	CCCGGG	1 cut(s)	555
CseI	GACGC	4 cut(s)	400, 530, 858, 1438
Csp6I	GTAC	6 cut(s)	84, 478, 544, 979, 987, 1536
CviAII	CATG	4 cut(s)	307, 772, 1187, 1505
CviQI	GTAC	6 cut(s)	84, 478, 544, 979, 987, 1536
DdeI	CTNAG	3 cut(s)	350, 970, 1208
DinI	GGCGCC	1 cut(s)	293
DpnI	GATC	2 cut(s)	465, 600
DpnII	GATC	2 cut(s)	463, 598
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	168, 1032
EarI	CTCTTC	2 cut(s)	168, 1032
EciI	GGCGGA	2 cut(s)	136, 232
Eco130I	CCWWGG	2 cut(s)	1176, 1461
Eco147I	AGGCCT	1 cut(s)	647
Eco24I	GRGCYC	2 cut(s)	57, 306
Eco47I	GGWCC	4 cut(s)	343, 940, 1147, 1549
Eco47III	AGCGCT	1 cut(s)	818
Eco57I	CTGAAG	1 cut(s)	513
Eco81I	CCTNAGG	1 cut(s)	970
Eco88I	CYCGRG	2 cut(s)	555, 1407
EcoO109I	RGGNCCY	1 cut(s)	1147
EcoRII	CCWGG	2 cut(s)	500, 1551
EcoT14I	CCWWGG	2 cut(s)	1176, 1461
EcoT38I	GRGCYC	2 cut(s)	57, 306
EgeI	GGCGCC	1 cut(s)	293
EheI	GGCGCC	1 cut(s)	293
ErhI	CCWWGG	2 cut(s)	1176, 1461
Esp3I	CGTCTC	3 cut(s)	290, 383, 441
FaeI	CATG	4 cut(s)	310, 775, 1190, 1508
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FaqI	GGGAC	5 cut(s)	239, 356, 819, 945, 1160
FatI	CATG	4 cut(s)	306, 771, 1186, 1504
FauI	CCCGC	2 cut(s)	333, 959
FokI	GGATG	7 cut(s)	617, 629, 695, 951, 1034, 1139, 1478
FriOI	GRGCYC	2 cut(s)	57, 306
FspBI	CTAG	3 cut(s)	525, 993, 1235
FspI	TGCGCA	1 cut(s)	540
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	3 cut(s)	235, 295, 820
HaeIII	GGCC	5 cut(s)	365, 505, 647, 691, 1185
HapII	CCGG	7 cut(s)	102, 108, 150, 289, 346, 556, 602
HgaI	GACGC	4 cut(s)	400, 530, 858, 1438
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	310, 775, 1190, 1508
HindIII	AAGCTT	2 cut(s)	26, 659
HinfI	GANTC	9 cut(s)	92, 98, 153, 280, 310, 358, 374, 452, 1445
HpaII	CCGG	7 cut(s)	102, 108, 150, 289, 346, 556, 602
HphI	GGTGA	4 cut(s)	122, 1046, 1209, 1259
Hpy188I	TCNGA	5 cut(s)	52, 97, 172, 320, 457
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	9 cut(s)	394, 493, 583, 796, 899, 970, 1049, 1175, 1540
HpyCH4III	ACNGT	3 cut(s)	944, 1064, 1498
HpyCH4V	TGCA	6 cut(s)	214, 669, 833, 847, 1112, 1205
HpyF3I	CTNAG	3 cut(s)	350, 970, 1208
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	310, 775, 1190, 1508
KasI	GGCGCC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	601
KpnI	GGTACC	1 cut(s)	1539
Kzo9I	GATC	2 cut(s)	463, 598
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	4 cut(s)	137, 768, 908, 1379
Lsp1109I	GCAGC	7 cut(s)	56, 86, 89, 226, 229, 394, 415
LweI	GCATC	3 cut(s)	106, 607, 1117
MaeI	CTAG	3 cut(s)	525, 993, 1235
MaeIII	GTNAC	6 cut(s)	110, 518, 781, 1058, 1366, 1453
MalI	GATC	2 cut(s)	465, 600
MbiI	CCGCTC	2 cut(s)	131, 1533
MboI	GATC	2 cut(s)	463, 598
MboII	GAAGA	5 cut(s)	185, 478, 1040, 1049, 1262
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	3 cut(s)	57, 306, 439
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	4 cut(s)	471, 652, 725, 1337
MluNI	TGGCCA	1 cut(s)	365
Mly113I	GGCGCC	1 cut(s)	292
MlyI	GAGTC	5 cut(s)	86, 92, 162, 274, 304
MmeI	TCCRAC	1 cut(s)	120
Mox20I	TGGCCA	1 cut(s)	365
MroI	TCCGGA	1 cut(s)	601
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	4 cut(s)	746, 821, 1277, 1416
MslI	CAYNNNNRTG	1 cut(s)	1095
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	385
MspI	CCGG	7 cut(s)	102, 108, 150, 289, 346, 556, 602
MspR9I	CCNGG	4 cut(s)	502, 556, 557, 1553
MteI	GCGCNGCGC	1 cut(s)	235
MvaI	CCWGG	2 cut(s)	502, 1553
MvnI	CGCG	4 cut(s)	190, 237, 579, 581
NarI	GGCGCC	1 cut(s)	292
NciI	CCSGG	2 cut(s)	556, 557
NdeII	GATC	2 cut(s)	463, 598
NlaIII	CATG	4 cut(s)	310, 775, 1190, 1508
NlaIV	GGNNCC	8 cut(s)	106, 139, 293, 344, 600, 1148, 1375, 1537
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	3 cut(s)	110, 518, 1058
NsbI	TGCGCA	1 cut(s)	540
NspI	RCATGY	1 cut(s)	775
PaeI	GCATGC	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	647
PciSI	GCTCTTC	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 414
PfeI	GAWTC	4 cut(s)	358, 374, 452, 1445
PflMI	CCANNNNNTGG	2 cut(s)	698, 765
PleI	GAGTC	5 cut(s)	86, 92, 161, 274, 304
PluTI	GGCGCC	1 cut(s)	295
PpsI	GAGTC	5 cut(s)	86, 92, 161, 274, 304
PpuMI	RGGWCCY	1 cut(s)	1147
Psp5II	RGGWCCY	1 cut(s)	1147
Psp6I	CCWGG	2 cut(s)	500, 1551
PspGI	CCWGG	2 cut(s)	500, 1551
PspN4I	GGNNCC	8 cut(s)	106, 139, 293, 344, 600, 1148, 1375, 1537
PspPI	GGNCC	5 cut(s)	343, 504, 940, 1147, 1549
PspPPI	RGGWCCY	1 cut(s)	1147
PsuI	RGATCY	1 cut(s)	598
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	6 cut(s)	85, 479, 545, 980, 988, 1537
RsaNI	GTAC	6 cut(s)	84, 478, 544, 979, 987, 1536
RseI	CAYNNNNRTG	1 cut(s)	1095
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	746, 821, 1277, 1416
Sau3AI	GATC	2 cut(s)	463, 598
Sau96I	GGNCC	5 cut(s)	343, 504, 940, 1147, 1549
ScaI	AGTACT	2 cut(s)	545, 980
SchI	GAGTC	5 cut(s)	86, 92, 162, 274, 304
ScrFI	CCNGG	4 cut(s)	502, 556, 557, 1553
SduI	GDGCHC	3 cut(s)	57, 306, 439
SfaNI	GCATC	3 cut(s)	106, 607, 1117
SfcI	CTRYAG	2 cut(s)	39, 1080
SfoI	GGCGCC	1 cut(s)	293
SinI	GGWCC	4 cut(s)	343, 940, 1147, 1549
SmaI	CCCGGG	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	1095
SmlI	CTYRAG	4 cut(s)	132, 438, 777, 1347
SmoI	CTYRAG	4 cut(s)	132, 438, 777, 1347
SphI	GCATGC	1 cut(s)	775
Sse9I	AATT	4 cut(s)	471, 652, 725, 1337
SseBI	AGGCCT	1 cut(s)	647
SspDI	GGCGCC	1 cut(s)	291
SspMI	CTAG	3 cut(s)	525, 993, 1235
StuI	AGGCCT	1 cut(s)	647
StyD4I	CCNGG	4 cut(s)	500, 554, 555, 1551
StyI	CCWWGG	2 cut(s)	1176, 1461
TaaI	ACNGT	3 cut(s)	944, 1064, 1498
TaqI	TCGA	5 cut(s)	156, 356, 372, 462, 1529
TaqII	GACCGA	2 cut(s)	104, 1524
TasI	AATT	4 cut(s)	471, 652, 725, 1337
TatI	WGTACW	2 cut(s)	543, 978
TauI	GCSGC	9 cut(s)	122, 125, 128, 131, 188, 237, 563, 571, 737
TfiI	GAWTC	4 cut(s)	358, 374, 452, 1445
Tru1I	TTAA	4 cut(s)	746, 821, 1277, 1416
Tru9I	TTAA	4 cut(s)	746, 821, 1277, 1416
TscAI	CASTG	3 cut(s)	496, 676, 1246
TseFI	GTSAC	3 cut(s)	110, 518, 1058
TseI	GCWGC	7 cut(s)	44, 74, 77, 214, 217, 382, 428
Tsp45I	GTSAC	3 cut(s)	110, 518, 1058
TspDTI	ATGAA	3 cut(s)	242, 413, 521
TspGWI	ACGGA	1 cut(s)	1142
TspMI	CCCGGG	1 cut(s)	555
TspRI	CASTG	3 cut(s)	496, 676, 1246
Van91I	CCANNNNNTGG	2 cut(s)	698, 765
VpaK11BI	GGWCC	4 cut(s)	343, 940, 1147, 1549
XapI	RAATTY	2 cut(s)	471, 1337
XceI	RCATGY	1 cut(s)	775
XmaI	CCCGGG	1 cut(s)	555
XspI	CTAG	3 cut(s)	525, 993, 1235
ZrmI	AGTACT	2 cut(s)	545, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.