RchiOBHm_Chr3g0484581

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010949
Physical Location & Seq
Reverse (-)
30946861 .. 30947568
708 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGGCTTCATGGCAAGTCTTTGACCTTGTTTCTCACTATCTTGACCCCAAAACCCTAGCCATAGCCTGTTGCGTCTGCAAGTCCTGGTTCAGTTGCATTTCCTCCGACCACATTTGGAAGCCCATTTGCACCACCCATTACCCTTCTCTCTCTAATCTCAAGCTCACCATTCCCTACTATCGCCTCTACGCCATGGCCTCTGCCGCAGCCAAACGCCGCTTCCAGACCCCCTCCAAACCCTGCCTTGCCCTCGACAACCTCATCTTCACCGTCAACGTCTTCAACCACAAGAACGTTCTGTGTCTCGAAAAACCAGGGAACGAGCTAGTCATGGATTCCAATGGGGTGTTCAAGTTCGATATTGCCGTCGATAACTACGAGTTTGAAGCTGTGGCGTTGGAGTCGGTGAGAGTTACGTGGAATGTGGTGTTGAAAGGGTGGAAAGGGGTTTTTAATATGTTGGAATGTCAAGGGAACAAAGGGGTCGACTGGTGGTTCTGGGAGGAGCTGCCTTTGCCGGGGTGTTGCTCGGGCCTCGTCGATAGCGGTGTCGTGGCAGATTTGAGGTTGGAGTTTACTGATAGCAAAAACAGTGTTGATGTTGGGCGGATCAACAAAGTGAGCGTGGGGATGTTGAGTACAGTAAACTTGAGATATGTCAGTGTGGATGCTGCTCTAAGATACTTGCAACACTTTCTTGGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

235

Amino Acids

26.54

Weight (kDa)

6.92

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 12 - 44 2.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 486
AciI CCGC 4 cut(s) 204, 217, 546, 607
AclI AACGTT 1 cut(s) 294
AclWI GGATC 1 cut(s) 617
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 1 cut(s) 518
AgsI TTSAA 4 cut(s) 283, 352, 386, 433
AjnI CCWGG 2 cut(s) 83, 313
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 332, 364
AluBI AGCT 4 cut(s) 163, 325, 389, 508
AluI AGCT 4 cut(s) 163, 325, 389, 508
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 2 cut(s) 195, 532
ApeKI GCWGC 3 cut(s) 206, 508, 671
AspS9I GGNCC 1 cut(s) 532
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 157, 259, 418
AvaI CYCGRG 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 3 cut(s) 218, 495, 658
BceAI ACGGC 1 cut(s) 350
BciT130I CCWGG 2 cut(s) 85, 315
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 2 cut(s) 56, 326
BisI GCNGC 5 cut(s) 204, 207, 217, 509, 672
BlsI GCNGC 5 cut(s) 205, 208, 218, 510, 673
Bme1390I CCNGG 3 cut(s) 85, 315, 519
BmeT110I CYCGRG 1 cut(s) 529
BmgT120I GGNCC 1 cut(s) 532
BmrFI CCNGG 3 cut(s) 85, 315, 519
BmsI GCATC 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 271
BpuEI CTTGAG 2 cut(s) 143, 670
BpuMI CCSGG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 192, 314, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 518
Bse1I ACTGG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 85, 315
BseDI CCNNGG 3 cut(s) 192, 314, 518
BseGI GGATG 2 cut(s) 636, 673
BseLI CCNNNNNNNGG 1 cut(s) 518
BseNI ACTGG 1 cut(s) 494
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 3 cut(s) 218, 495, 658
BshFI GGCC 2 cut(s) 197, 534
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 2 cut(s) 197, 534
BsoBI CYCGRG 1 cut(s) 529
Bsp143I GATC 1 cut(s) 609
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 4 cut(s) 204, 217, 546, 607
BspANI GGCC 2 cut(s) 197, 534
BspPI GGATC 1 cut(s) 617
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 3 cut(s) 192, 314, 518
BssMI GATC 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 85, 315
Bst4CI ACNGT 3 cut(s) 271, 593, 643
BstBAI YACGTR 1 cut(s) 417
BstDEI CTNAG 1 cut(s) 677
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 636, 673
BstKTI GATC 1 cut(s) 612
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 1 cut(s) 609
BstMWI GCNNNNNNNGC 2 cut(s) 203, 514
BstNI CCWGG 2 cut(s) 85, 315
BstSCI CCNGG 3 cut(s) 83, 313, 517
BstV1I GCAGC 3 cut(s) 218, 495, 658
BstV2I GAAGAC 1 cut(s) 271
BsuRI GGCC 2 cut(s) 197, 534
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 636, 673
BtsIMutI CAGTG 2 cut(s) 598, 667
Cfr13I GGNCC 1 cut(s) 532
CseI GACGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 639
CviAII CATG 3 cut(s) 9, 193, 331
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 1 cut(s) 677
DpnI GATC 1 cut(s) 611
DpnII GATC 1 cut(s) 609
EciI GGCGGA 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 83, 313
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 12, 196, 334
FaiI YATR 6 cut(s) 10, 62, 194, 332, 458, 657
FatI CATG 3 cut(s) 8, 192, 330
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 5 cut(s) 204, 207, 217, 509, 672
FokI GGATG 2 cut(s) 643, 680
Fsp4HI GCNGC 5 cut(s) 204, 207, 217, 509, 672
FspBI CTAG 2 cut(s) 56, 326
GluI GCNGC 5 cut(s) 204, 207, 217, 509, 672
HaeIII GGCC 2 cut(s) 197, 534
HapII CCGG 1 cut(s) 518
HgaI GACGC 1 cut(s) 61
Hin1II CATG 3 cut(s) 12, 196, 334
HincII GTYRAC 2 cut(s) 274, 487
HindII GTYRAC 2 cut(s) 274, 487
HinfI GANTC 2 cut(s) 335, 401
HpaII CCGG 1 cut(s) 518
HphI GGTGA 3 cut(s) 157, 259, 418
Hpy166II GTNNAC 4 cut(s) 274, 487, 576, 646
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 41, 223, 305
Hpy8I GTNNAC 4 cut(s) 274, 487, 576, 646
Hpy99I CGWCG 2 cut(s) 371, 542
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 3 cut(s) 271, 593, 643
HpyCH4IV ACGT 3 cut(s) 276, 294, 416
HpyCH4V TGCA 4 cut(s) 78, 96, 129, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 514
HpyF3I CTNAG 1 cut(s) 677
HpySE526I ACGT 3 cut(s) 276, 294, 416
Hsp92II CATG 3 cut(s) 12, 196, 334
Kzo9I GATC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 218, 495, 658
LweI GCATC 1 cut(s) 658
MaeI CTAG 2 cut(s) 56, 326
MaeII ACGT 3 cut(s) 276, 294, 416
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 611
MboI GATC 1 cut(s) 609
MboII GAAGA 2 cut(s) 256, 271
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 4 cut(s) 129, 378, 441, 549
MnlI CCTC 9 cut(s) 112, 194, 208, 241, 260, 269, 496, 545, 558
MseI TTAA 1 cut(s) 453
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 3 cut(s) 85, 315, 519
MvaI CCWGG 2 cut(s) 85, 315
MwoI GCNNNNNNNGC 2 cut(s) 203, 514
NciI CCSGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 192
NdeII GATC 1 cut(s) 609
NlaIII CATG 3 cut(s) 12, 196, 334
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 375
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 5 cut(s) 205, 208, 218, 510, 673
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
Ppu21I YACGTR 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 83, 313
PspGI CCWGG 2 cut(s) 83, 313
PspPI GGNCC 1 cut(s) 532
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
SalI GTCGAC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 5 cut(s) 204, 207, 217, 509, 672
Sau3AI GATC 1 cut(s) 609
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 3 cut(s) 85, 315, 519
SfaNI GCATC 1 cut(s) 658
SmlI CTYRAG 2 cut(s) 158, 649
SmoI CTYRAG 2 cut(s) 158, 649
SsiI CCGC 4 cut(s) 204, 217, 546, 607
SspMI CTAG 2 cut(s) 56, 326
StyD4I CCNGG 3 cut(s) 83, 313, 517
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 3 cut(s) 271, 593, 643
TaiI ACGT 3 cut(s) 279, 297, 419
TaqI TCGA 6 cut(s) 252, 306, 357, 369, 486, 540
TatI WGTACW 1 cut(s) 638
TauI GCSGC 2 cut(s) 206, 219
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 598, 667
TseI GCWGC 3 cut(s) 206, 508, 671
TspRI CASTG 2 cut(s) 598, 667
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 2 cut(s) 56, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.