RchiOBHm_Chr3g0487591

PetM family of cytochrome b6f complex subunit 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005452
Physical Location & Seq
Forward (+)
34798069 .. 34800206
2138 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGGCAACAGCCTCAGCAACAGTCTCACCAGCAATGTTCACCACCACTACCACAGTGGCCAAGTCTATGAGGAAACCATCGAACAATGTGCATTACATTTCAGGAGTCAATTCCTTTTCTGGACTCAAAGCTCACAATAGTGTGGCCACTCTTGGTCTTCCTCAGTGTACTCATCAATCCTTTGCTAAGATTGTGAGCTCCTTAAGAACTCCATCGCAGAACAAGGGCAGAGGTGGAGGTGCACTATCATCTACCTGCAATGCAGTTGGTGAGATTTTCAAGATTGCAGCAATCATGAATGGACTCACTCTTGTTGGAGTTGCAGTTGGATTTGTACTTCTCCGAATCGAAGCATCTGTGGAGGAGGCAGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PetM

Protein Analysis

125

Amino Acids

12.89

Weight (kDa)

9.44

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PetM PF08041 90 - 117 7e-12 PetM family of cytochrome b6f complex subunit 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 57, 144
AfaI GTAC 2 cut(s) 169, 336
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 280
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 2 cut(s) 131, 198
AluI AGCT 2 cut(s) 131, 198
Alw21I GWGCWC 2 cut(s) 200, 244
Alw26I GTCTC 1 cut(s) 28
Alw44I GTGCAC 1 cut(s) 240
AoxI GGCC 2 cut(s) 57, 144
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 287
AsuHPI GGTGA 3 cut(s) 18, 31, 281
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 2 cut(s) 59, 146
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 200, 244
BbvCI CCTCAGC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 85, 220
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BcoDI GTCTC 1 cut(s) 28
BfrI CTTAAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse3DI GCAATG 2 cut(s) 39, 265
BseMI GCAATG 2 cut(s) 39, 265
BseMII CTCAG 2 cut(s) 27, 176
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 2 cut(s) 59, 146
BsiHKAI GWGCWC 2 cut(s) 200, 244
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 59, 146
Bsp1286I GDGCHC 2 cut(s) 200, 244
BspANI GGCC 2 cut(s) 59, 146
BspCNI CTCAG 2 cut(s) 26, 175
BspHI TCATGA 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 263
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 2 cut(s) 39, 265
Bst4CI ACNGT 2 cut(s) 22, 55
BstAFI CTTAAG 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 13, 162, 186
BstMAI GTCTC 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 59, 146
BtgZI GCGATG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 60, 170
BveI ACCTGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 294
Csp6I GTAC 2 cut(s) 168, 335
CviAII CATG 1 cut(s) 295
CviJI RGCY 5 cut(s) 11, 59, 131, 146, 198
CviKI_1 RGCY 5 cut(s) 11, 59, 131, 146, 198
CviQI GTAC 2 cut(s) 168, 335
DdeI CTNAG 3 cut(s) 13, 162, 186
EaeI YGGCCR 2 cut(s) 57, 144
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 1 cut(s) 298
FaiI YATR 2 cut(s) 68, 296
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 288
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 2 cut(s) 59, 146
Hin1II CATG 1 cut(s) 298
HinfI GANTC 4 cut(s) 105, 123, 303, 345
HphI GGTGA 3 cut(s) 18, 31, 281
Hpy166II GTNNAC 3 cut(s) 39, 168, 242
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 4 cut(s) 102, 120, 280, 295
Hpy8I GTNNAC 3 cut(s) 39, 168, 242
HpyCH4III ACNGT 2 cut(s) 22, 55
HpyCH4V TGCA 6 cut(s) 91, 242, 258, 263, 287, 323
HpyF3I CTNAG 3 cut(s) 13, 162, 186
Hsp92II CATG 1 cut(s) 298
LmnI GCTCC 1 cut(s) 203
LpnPI CCDG 4 cut(s) 42, 87, 105, 268
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 362
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 200, 244
MlsI TGGCCA 2 cut(s) 59, 146
MluCI AATT 1 cut(s) 109
MluNI TGGCCA 2 cut(s) 59, 146
MlyI GAGTC 3 cut(s) 114, 117, 297
MmeI TCCRAC 2 cut(s) 295, 307
MnlI CCTC 7 cut(s) 22, 63, 171, 224, 230, 355, 358
Mox20I TGGCCA 2 cut(s) 59, 146
MscI TGGCCA 2 cut(s) 59, 146
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 138
Msp20I TGGCCA 2 cut(s) 59, 146
MspCI CTTAAG 1 cut(s) 202
NlaIII CATG 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 138
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 3 cut(s) 113, 117, 297
PpsI GAGTC 3 cut(s) 113, 117, 297
Psp124BI GAGCTC 1 cut(s) 200
RsaI GTAC 2 cut(s) 169, 336
RsaNI GTAC 2 cut(s) 168, 335
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 1 cut(s) 288
SchI GAGTC 3 cut(s) 114, 117, 297
SduI GDGCHC 2 cut(s) 200, 244
SetI ASST 5 cut(s) 133, 200, 235, 241, 257
SfaNI GCATC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 109
SstI GAGCTC 1 cut(s) 200
TaaI ACNGT 2 cut(s) 22, 55
TaqI TCGA 2 cut(s) 80, 348
TasI AATT 1 cut(s) 109
TatI WGTACW 2 cut(s) 167, 334
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TscAI CASTG 2 cut(s) 60, 170
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 311
TspRI CASTG 2 cut(s) 60, 170
Vha464I CTTAAG 1 cut(s) 202
VneI GTGCAC 1 cut(s) 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.