RchiOBHm_Chr3g0496761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015527
Physical Location & Seq
Reverse (-)
48065166 .. 48066578
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1239 bp
ATGATCATGTATGGGGGTGAAGAAGGTTTCTCTTTGTTTTTGCATTTGGGAGAAAGCAAGTCCAGTTTTGATCTTGAGAAAGTAGTATGCAACCATGGTTTCTTCATGATGGCTCCAAACCGTTGGATTTCGTCTTCGAAAACCCTACAACGGCCCTTGAGACTCGCAGACTCAACCAAGTCAGTGATGGTTTCCATCTTAAAGCCATGTGTTTCTATTCATAAGAACTCTCTCATAGTTCGACTCCACAAAGTTAGTCCTAGCGACATATCAAAAAAAGATGAGGTTGCTATACTAGAACAAGTGCGTCGAATGCTTAGGATTTCCCATAAAGATGAAGAAAATGTAAAAGAGTATCATAAAAAGCTCTTCCAGCTCAAGGACAAGGACAACTACGACCATTACAAAGTCTGTTCTGGTAGAATGTTTCGTTCTCCTTCTCTCTTTGAAGATCTTGTCAAATGCCTTCTGTTATGTAACTGCAAGTATACACATCTACAACTCTTCTTCTGTTTTTTTTTGGTCACTTGTTCATATTCATTTAGTTTTCATTCATTTGTCTTCTTATTATATATAATGATTGATATTAGGTGGTCGAATTCATTGAAAATGGCTCGAGCTCTTTGTGAGCTTCAATTTGAGCCAAGCAGCAATGCTTCGATGAGATCAAACGGACAAAAGAGGCAGAGAGAAGAATTAAAGATTGATCGAAGTGATTATGATGGTAAAGAAAAATTAGGTAATTTTCCAAGCTCACGAGAACTTGCTAGATTGGATGGGAAGACTTTAAAAAAGCTTACCAATAATATTCTTGGCTACCGGGCAAAATACATTCTAAGTCTTGCTAAAGGTGTGGAGAGTGGAAAGATAGGACTTGCTGAATTTGAAGGGCTTGATCAGGAGAAAGATGATGTGTTTCAGAAATTCATGCAAATAAAAGGTTTTGGTTCCTTTGCATGCGCCAATGCTATGATGTGCATTGGATATTATCACAAAGTTCCAGTAGATACTGAAACTATAAGGCATTTGCAGCAGGTTCATGGGAGGAAAAATTGCAACAAAAATACTGTCATGGAAGATGTGGAAGAAATCTATAAGAAGTATGCCCCATTTCAGTGCTTGGCATATTGGTCGGAGCTCTTGGACTCGTATGAATGCAAATTTGGGAAGCTTAGTGAATTACCGGACTCTGCCTATCATACAATAAGTGGGAGGCTTGAATCTTTTGACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

412

Amino Acids

47.7

Weight (kDa)

8.82

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015527)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27954
malus_domestica MD00G1096100.v1.1
prunus_persica Prupe.4G287800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496761
rosa_laevigata RLG00000022458 RLG00000022506
rosa_multiflora Rmu_sc0000542.1_g000009 Rmu_sc0001832.1_g000011
rosa_roxburghii Rroxscaffold_6G00388030
rosa_rugosa Rorug03G0286800
rosa_samantha Rh3AG331200 Rh3BG367800 Rh3CG363900 Rh3DG367200
rosa_wichuraiana Rw0G004010 Rw3G029000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1024
AccI GTMKAC 1 cut(s) 488
AcsI RAATTY 4 cut(s) 598, 881, 923, 1160
AfiI CCNNNNNNNGG 2 cut(s) 150, 379
AgsI TTSAA 5 cut(s) 449, 607, 635, 887, 1220
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
AluBI AGCT 8 cut(s) 367, 376, 620, 631, 753, 796, 1138, 1171
AluI AGCT 8 cut(s) 367, 376, 620, 631, 753, 796, 1138, 1171
Alw21I GWGCWC 2 cut(s) 622, 1140
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 615
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 648, 1030
ApoI RAATTY 4 cut(s) 598, 881, 923, 1160
ArsI GACNNNNNNTTYG 2 cut(s) 1053, 1085
AspLEI GCGC 1 cut(s) 962
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 615
BanII GRGCYC 2 cut(s) 622, 1140
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 3 cut(s) 126, 553, 788
Bbv12I GWGCWC 2 cut(s) 622, 1140
BbvI GCAGC 2 cut(s) 660, 1042
BccI CCATC 5 cut(s) 103, 181, 203, 716, 770
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 1113, 1147
BclI TGATCA 2 cut(s) 3, 895
BcnI CCSGG 1 cut(s) 821
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 3 cut(s) 261, 296, 768
BfuAI ACCTGC 1 cut(s) 1024
BglII AGATCT 1 cut(s) 451
BisI GCNGC 2 cut(s) 649, 1031
BlsI GCNGC 2 cut(s) 650, 1032
Bme1390I CCNGG 1 cut(s) 821
BmeT110I CYCGRG 1 cut(s) 615
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 114, 949
BmrFI CCNGG 1 cut(s) 821
BpiI GAAGAC 3 cut(s) 126, 553, 788
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 95, 178, 362
BpuMI CCSGG 1 cut(s) 821
BsaJI CCNNGG 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 1183
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 379
Bse1I ACTGG 2 cut(s) 63, 1001
Bse3DI GCAATG 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 2 cut(s) 150, 379
BseMI GCAATG 1 cut(s) 658
BseNI ACTGG 2 cut(s) 63, 1001
BseXI GCAGC 2 cut(s) 660, 1042
BshFI GGCC 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 622, 1140
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 2 cut(s) 820, 1184
BslI CCNNNNNNNGG 2 cut(s) 150, 379
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 2 cut(s) 318, 1160
BsnI GGCC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 615
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 622, 1140
Bsp143I GATC 6 cut(s) 3, 70, 451, 665, 706, 895
Bsp19I CCATGG 1 cut(s) 94
BspANI GGCC 1 cut(s) 154
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 114, 949
BspMI ACCTGC 1 cut(s) 1024
BspQI GCTCTTC 1 cut(s) 374
BspT104I TTCGAA 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 2 cut(s) 63, 1001
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
BssNAI GTATAC 1 cut(s) 489
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 94
Bst1107I GTATAC 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 756
Bst4CI ACNGT 2 cut(s) 122, 1069
Bst6I CTCTTC 2 cut(s) 374, 509
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 958
BstDEI CTNAG 3 cut(s) 317, 836, 1172
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 781
BstHHI GCGC 1 cut(s) 962
BstKTI GATC 6 cut(s) 6, 73, 454, 668, 709, 898
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
BstMWI GCNNNNNNNGC 3 cut(s) 313, 373, 1030
BstNSI RCATGY 1 cut(s) 960
BstSCI CCNGG 1 cut(s) 819
BstV1I GCAGC 2 cut(s) 660, 1042
BstV2I GAAGAC 3 cut(s) 126, 553, 788
BstX2I RGATCY 1 cut(s) 451
BstXI CCANNNNNNTGG 1 cut(s) 123
BstYI RGATCY 1 cut(s) 451
BstZ17I GTATAC 1 cut(s) 489
BsuRI GGCC 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 189, 1121
BveI ACCTGC 1 cut(s) 1024
Cac8I GCNNGC 1 cut(s) 958
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 962
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 296
CviAII CATG 8 cut(s) 7, 95, 106, 207, 928, 957, 1040, 1072
DdeI CTNAG 3 cut(s) 317, 836, 1172
DpnI GATC 6 cut(s) 5, 72, 453, 667, 708, 897
DpnII GATC 6 cut(s) 3, 70, 451, 665, 706, 895
DraI TTTAAA 1 cut(s) 789
Eam1104I CTCTTC 2 cut(s) 374, 509
EarI CTCTTC 2 cut(s) 374, 509
Ecl136II GAGCTC 2 cut(s) 620, 1138
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 2 cut(s) 622, 1140
Eco53kI GAGCTC 2 cut(s) 620, 1138
Eco88I CYCGRG 1 cut(s) 615
EcoICRI GAGCTC 2 cut(s) 620, 1138
EcoRI GAATTC 1 cut(s) 598
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 622, 1140
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
FatI CATG 8 cut(s) 6, 94, 105, 206, 927, 956, 1039, 1071
FbaI TGATCA 2 cut(s) 3, 895
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 2 cut(s) 649, 1031
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 622, 1140
Fsp4HI GCNGC 2 cut(s) 649, 1031
FspBI CTAG 3 cut(s) 261, 296, 768
GlaI GCGC 1 cut(s) 961
GluI GCNGC 2 cut(s) 649, 1031
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 820, 1184
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 962
Hin1II CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
Hin6I GCGC 1 cut(s) 960
HinP1I GCGC 1 cut(s) 960
HindIII AAGCTT 2 cut(s) 794, 1169
HinfI GANTC 6 cut(s) 162, 170, 243, 1145, 1187, 1220
HpaII CCGG 2 cut(s) 820, 1184
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 2 cut(s) 921, 1135
Hpy188III TCNNGA 4 cut(s) 74, 106, 756, 899
Hpy8I GTNNAC 1 cut(s) 489
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 4 cut(s) 17, 447, 476, 881
HpyCH4III ACNGT 2 cut(s) 122, 1069
HpyCH4V TGCA 9 cut(s) 43, 90, 483, 931, 956, 978, 1030, 1056, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 373, 1030
HpyF3I CTNAG 3 cut(s) 317, 836, 1172
Hsp92II CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
HspAI GCGC 1 cut(s) 960
Ksp22I TGATCA 2 cut(s) 3, 895
Kzo9I GATC 6 cut(s) 3, 70, 451, 665, 706, 895
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 2 cut(s) 118, 1135
LpnPI CCDG 8 cut(s) 76, 386, 402, 833, 884, 1014, 1019, 1197
Lsp1109I GCAGC 2 cut(s) 660, 1042
MaeI CTAG 3 cut(s) 261, 296, 768
MaeIII GTNAC 2 cut(s) 476, 523
MalI GATC 6 cut(s) 5, 72, 453, 667, 708, 897
MboI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 622, 1140
MlyI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
MmeI TCCRAC 2 cut(s) 104, 1113
MnlI CCTC 4 cut(s) 277, 675, 1038, 1206
MseI TTAA 3 cut(s) 200, 698, 788
MslI CAYNNNNRTG 2 cut(s) 333, 1114
MspI CCGG 2 cut(s) 820, 1184
MspR9I CCNGG 1 cut(s) 821
Mva1269I GAATGC 2 cut(s) 318, 1160
MwoI GCNNNNNNNGC 3 cut(s) 313, 373, 1030
NciI CCSGG 1 cut(s) 821
NcoI CCATGG 1 cut(s) 94
NdeII GATC 6 cut(s) 3, 70, 451, 665, 706, 895
NlaIII CATG 8 cut(s) 10, 98, 109, 210, 931, 960, 1043, 1075
NlaIV GGNNCC 2 cut(s) 114, 949
NmuCI GTSAC 1 cut(s) 523
NspI RCATGY 1 cut(s) 960
NspV TTCGAA 1 cut(s) 137
PaeI GCATGC 1 cut(s) 960
PaeR7I CTCGAG 1 cut(s) 615
PagI TCATGA 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 374
PctI GAATGC 2 cut(s) 318, 1160
PfeI GAWTC 1 cut(s) 1220
PkrI GCNGC 2 cut(s) 650, 1032
PleI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
PpsI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
Psp124BI GAGCTC 2 cut(s) 622, 1140
PspN4I GGNNCC 2 cut(s) 114, 949
PspPI GGNCC 1 cut(s) 153
PspXI VCTCGAGB 1 cut(s) 615
PsuI RGATCY 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 333, 1114
SacI GAGCTC 2 cut(s) 622, 1140
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 3 cut(s) 200, 698, 788
SatI GCNGC 2 cut(s) 649, 1031
Sau3AI GATC 6 cut(s) 3, 70, 451, 665, 706, 895
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 5 cut(s) 156, 164, 237, 1139, 1181
ScrFI CCNGG 1 cut(s) 821
SduI GDGCHC 2 cut(s) 622, 1140
Sfr274I CTCGAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 615
SmiMI CAYNNNNRTG 2 cut(s) 333, 1114
SmlI CTYRAG 4 cut(s) 74, 157, 377, 615
SmoI CTYRAG 4 cut(s) 74, 157, 377, 615
SphI GCATGC 1 cut(s) 960
SspI AATATT 1 cut(s) 808
SspMI CTAG 3 cut(s) 261, 296, 768
SstI GAGCTC 2 cut(s) 622, 1140
StyD4I CCNGG 1 cut(s) 819
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 2 cut(s) 122, 1069
TaqI TCGA 7 cut(s) 137, 241, 310, 596, 616, 659, 709
TfiI GAWTC 1 cut(s) 1220
Tru1I TTAA 3 cut(s) 200, 698, 788
Tru9I TTAA 3 cut(s) 200, 698, 788
TscAI CASTG 2 cut(s) 189, 1121
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 2 cut(s) 648, 1030
Tsp45I GTSAC 1 cut(s) 523
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 2 cut(s) 189, 1121
XapI RAATTY 4 cut(s) 598, 881, 923, 1160
XceI RCATGY 1 cut(s) 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 615
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 3 cut(s) 261, 296, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.