Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Forward (+)

48113809 .. 48114369

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGGCAAGGCTTGCAGAGGAGACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAATCTGTTGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAAGTAGCAGCTTCACCGGCTCCAGAAGAGAACAAGTCCAACACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGGAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTTAAGAGAAAATATATGGGGATGCAGAATCAGACGTTCTTAGAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGTGTTCAACTTGTCCAAAATTTATTGGGTACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

162

Amino Acids

18.95

Weight (kDa)

9.69

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	75 - 160	1.7e-14	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	305, 471
AfaI	GTAC	1 cut(s)	483
AfiI	CCNNNNNNNGG	2 cut(s)	337, 358
AflII	CTTAAG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	349, 460
AjnI	CCWGG	1 cut(s)	336
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	68, 273
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	305, 471
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	162, 166
AvaII	GGWCC	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	68, 273
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	165, 259
BlsI	GCNGC	2 cut(s)	166, 260
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 358
Bse118I	RCCGGY	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	337, 358
BseMII	CTCAG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	337, 358
BsmAI	GTCTC	2 cut(s)	68, 273
BsmBI	CGTCTC	2 cut(s)	68, 273
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	338
Bst4CI	ACNGT	1 cut(s)	486
Bst6I	CTCTTC	2 cut(s)	29, 177
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	332, 415
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	402
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	2 cut(s)	68, 273
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 173
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	482
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	5 cut(s)	64, 167, 176, 261, 336
CviKI_1	RGCY	5 cut(s)	64, 167, 176, 261, 336
CviQI	GTAC	1 cut(s)	482
DdeI	CTNAG	2 cut(s)	332, 415
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	29, 177
EarI	CTCTTC	2 cut(s)	29, 177
Eco47I	GGWCC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	336
Esp3I	CGTCTC	2 cut(s)	68, 273
FaeI	CATG	1 cut(s)	228
FaiI	YATR	6 cut(s)	226, 294, 312, 320, 390, 392
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	165, 259
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	2 cut(s)	165, 259
GluI	GCNGC	2 cut(s)	165, 259
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	1 cut(s)	228
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	2 cut(s)	325, 403
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	162, 166
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	179, 427
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	3 cut(s)	49, 424, 445
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	68, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 173
HpyF3I	CTNAG	2 cut(s)	332, 415
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	181, 228
LpnPI	CCDG	9 cut(s)	114, 186, 192, 201, 260, 275, 323, 350, 440
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	387
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	7 cut(s)	46, 52, 55, 58, 61, 64, 194
MluCI	AATT	2 cut(s)	305, 471
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	2 cut(s)	30, 219
MnlI	CCTC	5 cut(s)	30, 64, 121, 144, 341
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	65, 173
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	166, 260
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	98
RsaI	GTAC	1 cut(s)	483
RsaNI	GTAC	1 cut(s)	482
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	165, 259
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	4 cut(s)	103, 169, 413, 456
SfaNI	GCATC	1 cut(s)	387
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	305, 471
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	305, 471
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	327, 464
TspGWI	ACGGA	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	2 cut(s)	305, 471
XmiI	GTMKAC	1 cut(s)	87
XmnI	GAANNNNTTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.